Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DDB0218043
(1139 letters)
Database: /home/dicty1/resource/WorkingDBs//nr-clean
2,329,665 sequences; 788,375,511 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|57506070|ref|ZP_00371993.1| probable type I restriction enzym... 105 8e-21
gi|551948|gb|AAA98302.1| unknown [Geobacillus stearothermophilus] 103 4e-20
gi|21229078|ref|NP_635000.1| type I restriction-modification sys... 101 1e-19
gi|48895667|ref|ZP_00328651.1| COG0610: Type I site-specific res... 100 4e-19
gi|53718588|ref|YP_107574.1| hypothetical protein BPSL0945 [Burk... 99 1e-18
gi|56459753|ref|YP_155034.1| Type I site-specific restriction-mo... 98 2e-18
gi|53800416|ref|ZP_00359771.1| COG0610: Type I site-specific res... 98 2e-18
gi|15839310|ref|NP_299998.1| type I restriction-modification sys... 97 3e-18
gi|50086398|ref|YP_047908.1| putative type I restriction-modific... 97 4e-18
gi|49243380|emb|CAG41797.1| putative type I restriction enzyme p... 97 4e-18
gi|38505824|ref|NP_942394.1| type I site-specific deoxyribonucle... 96 6e-18
gi|52549654|gb|AAU83503.1| type I site-specific restriction-modi... 94 2e-17
gi|53690938|ref|ZP_00346524.1| COG0610: Type I site-specific res... 94 2e-17
gi|48839712|ref|ZP_00296642.1| COG0610: Type I site-specific res... 94 2e-17
gi|9948809|gb|AAG06120.1| hypothetical protein PA2732 [Pseudomon... 94 3e-17
gi|48868351|ref|ZP_00321696.1| COG0610: Type I site-specific res... 93 4e-17
gi|9656287|gb|AAF94914.1| type I restriction enzyme HsdR, putati... 92 7e-17
gi|41690596|ref|ZP_00147128.1| COG0610: Type I site-specific res... 92 9e-17
gi|52007207|ref|ZP_00334585.1| COG0610: Type I site-specific res... 92 9e-17
gi|21109200|gb|AAM37743.1| type I restriction-modification syste... 92 1e-16
gi|23473873|ref|ZP_00129168.1| COG0610: Type I site-specific res... 92 1e-16
gi|53756220|gb|AAU90511.1| type I restriction-modification syste... 91 2e-16
gi|34762431|ref|ZP_00143431.1| TYPE I RESTRICTION-MODIFICATION S... 91 2e-16
gi|52857360|ref|ZP_00341546.1| COG0610: Type I site-specific res... 91 3e-16
gi|28199930|ref|NP_780244.1| type I restriction-modification sys... 90 3e-16
gi|42632163|ref|ZP_00157701.1| COG0610: Type I site-specific res... 90 3e-16
gi|42629287|ref|ZP_00154835.1| COG0610: Type I site-specific res... 90 3e-16
gi|2411488|gb|AAB70710.1| HsdR [Klebsiella pneumoniae] >gi|74672... 90 3e-16
gi|56750492|ref|YP_171193.1| hypothetical protein syc0483_c [Syn... 90 5e-16
gi|52426226|ref|YP_089363.1| HsdR protein [Mannheimia succinicip... 90 5e-16
gi|51598164|ref|YP_072355.1| possible type I restriction enzyme ... 89 6e-16
gi|48243623|gb|AAT40773.1| putative type I site-specific restric... 88 1e-15
gi|23491885|dbj|BAC16860.1| conserved hypothetical protein [Cory... 88 1e-15
gi|48853355|ref|ZP_00307528.1| COG0610: Type I site-specific res... 87 3e-15
gi|1679868|emb|CAA68059.1| Sty SBLI [Salmonella enterica] 87 4e-15
gi|16124876|ref|NP_419440.1| hypothetical protein CC0623 [Caulob... 86 7e-15
gi|54308080|ref|YP_129100.1| putative type I restriction enzyme ... 82 9e-14
gi|45522101|ref|ZP_00173617.1| COG0610: Type I site-specific res... 82 9e-14
gi|56900920|gb|AAW31753.1| type I restriction enzyme HsdR [Vibri... 81 2e-13
gi|53692041|ref|ZP_00347095.1| COG0610: Type I site-specific res... 76 7e-12
gi|58038318|ref|YP_190287.1| Putative type I restriction enzyme ... 74 2e-11
gi|49257051|dbj|BAD24840.1| type I restriction-modification syst... 74 3e-11
gi|19919302|gb|AAM08232.1| putative type I restriction enzyme [L... 72 1e-10
gi|46141215|ref|ZP_00145477.2| COG0610: Type I site-specific res... 70 5e-10
gi|42525030|ref|NP_970410.1| type I restriction-modification sys... 69 6e-10
gi|15795175|ref|NP_247089.2| Type I restriction-modification enz... 69 1e-09
gi|2826244|gb|AAB98104.1| type I restriction-modification enzyme... 69 1e-09
gi|2129335|pir||D64315 type I restriction enzyme homolog - Metha... 69 1e-09
gi|53688022|ref|ZP_00109780.2| COG0610: Type I site-specific res... 68 1e-09
gi|6968968|emb|CAB73965.1| putative type I restriction enzyme R ... 67 2e-09
gi|19881241|gb|AAM00850.1| HsdR [Campylobacter jejuni] 67 2e-09
gi|19881235|gb|AAM00845.1| HsdR [Campylobacter jejuni] 67 2e-09
gi|19881208|gb|AAM00823.1| HsdR [Campylobacter jejuni] 67 2e-09
gi|19881202|gb|AAM00818.1| HsdR [Campylobacter jejuni] 67 2e-09
gi|56419917|ref|YP_147235.1| type I restriction-modification sys... 66 5e-09
gi|15669399|ref|NP_248209.1| type I restriction-modification enz... 66 5e-09
gi|2129336|pir||E64451 type I restriction enzyme homolog - Metha... 66 5e-09
gi|46142301|ref|ZP_00204237.1| COG0610: Type I site-specific res... 66 7e-09
gi|53758784|gb|AAU93075.1| type I restriction-modification syste... 65 9e-09
gi|21228306|ref|NP_634228.1| hypothetical protein MM2204 [Methan... 65 9e-09
gi|2622038|gb|AAB85438.1| type I restriction enzyme [Methanother... 65 2e-08
gi|15789431|ref|NP_279255.1| RmeR [Halobacterium salinarum NRC-1... 64 3e-08
gi|46580113|ref|YP_010921.1| type I restriction-modification enz... 64 3e-08
gi|48853287|ref|ZP_00307467.1| COG0610: Type I site-specific res... 62 8e-08
gi|52010778|ref|ZP_00338137.1| COG0610: Type I site-specific res... 62 8e-08
gi|21232336|ref|NP_638253.1| HsdR protein [Xanthomonas campestri... 62 1e-07
gi|24461250|gb|AAN61997.1| HsdR [Lactobacillus sakei] >gi|324555... 62 1e-07
gi|52853569|ref|ZP_00341000.1| COG0610: Type I site-specific res... 62 1e-07
gi|17133741|dbj|BAB76303.1| type I site-specific deoxyribonuclea... 61 2e-07
gi|15839328|ref|NP_300016.1| type I restriction-modification sys... 61 2e-07
gi|58583075|ref|YP_202091.1| type I restriction-modification sys... 61 2e-07
gi|48782405|ref|ZP_00278934.1| COG0610: Type I site-specific res... 60 3e-07
gi|27380123|ref|NP_771652.1| putative type I restriction enzyme ... 60 3e-07
gi|54030757|ref|ZP_00362893.1| COG0610: Type I site-specific res... 60 3e-07
gi|10717104|gb|AAG22017.1| putative HsdR [Streptococcus thermoph... 60 3e-07
gi|48477148|ref|YP_022854.1| type I restriction-modification sys... 59 7e-07
gi|2314575|gb|AAD08445.1| type I restriction enzyme R protein (h... 59 7e-07
gi|28868304|ref|NP_790923.1| type I restriction-modification enz... 59 9e-07
gi|15603406|ref|NP_246480.1| HsdR [Pasteurella multocida subsp. ... 59 9e-07
gi|11499298|ref|NP_070536.1| type I restriction-modification enz... 59 9e-07
gi|47574853|ref|ZP_00244888.1| COG0610: Type I site-specific res... 59 9e-07
gi|47572323|ref|ZP_00242368.1| COG0610: Type I site-specific res... 59 9e-07
gi|49658900|emb|CAF28526.1| hsdr-like Type I restriction enzyme ... 58 2e-06
gi|52082593|ref|YP_081384.1| putative Type I site-specific deoxy... 57 2e-06
gi|15612489|ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICT... 57 2e-06
gi|30248399|ref|NP_840469.1| Restriction enzymes type I helicase... 57 3e-06
gi|30250446|ref|NP_842516.1| Restriction enzymes type I helicase... 57 4e-06
gi|53757541|gb|AAU91832.1| type I restriction-modification syste... 57 4e-06
gi|2313568|gb|AAD07526.1| type I restriction enzyme R protein (h... 57 4e-06
gi|46156519|ref|ZP_00132562.2| COG0610: Type I site-specific res... 57 4e-06
gi|16273199|ref|NP_439437.1| type I restriction enzyme [Haemophi... 56 6e-06
gi|53795635|ref|ZP_00356694.1| COG0610: Type I site-specific res... 56 6e-06
gi|9789462|gb|AAF98314.1| HsdR [Lactococcus lactis subsp. lactis... 56 7e-06
gi|21226533|ref|NP_632455.1| type I restriction-modification sys... 56 7e-06
gi|2689698|gb|AAB91415.1| restriction subunit [Lactococcus lacti... 56 7e-06
gi|2865242|gb|AAC15896.1| type IC restriction subunit [Lactococc... 56 7e-06
gi|23113394|ref|ZP_00098774.1| COG0610: Type I site-specific res... 56 7e-06
gi|7467215|pir||T30818 hsdR protein - Klebsiella pneumoniae >gi|... 56 7e-06
gi|51893046|ref|YP_075737.1| type I restriction-modification sys... 55 9e-06
gi|28377764|ref|NP_784656.1| type I site-specific deoxyribonucle... 55 9e-06
gi|21228835|ref|NP_634757.1| hypothetical protein MM2733 [Methan... 55 9e-06
gi|6137147|gb|AAF04356.1| type IC restriction subunit [Streptoco... 55 9e-06
gi|23467874|ref|ZP_00123451.1| COG0610: Type I site-specific res... 55 1e-05
gi|46318360|ref|ZP_00218822.1| COG0610: Type I site-specific res... 55 2e-05
gi|42631821|ref|ZP_00157359.1| COG0610: Type I site-specific res... 55 2e-05
gi|1363459|pir||S49394 HsdR1 protein - Mycoplasma pulmonis >gi|4... 54 2e-05
gi|15964350|ref|NP_384703.1| PUTATIVE TYPE I RESTRICTION ENZYME ... 54 2e-05
gi|10954527|ref|NP_044166.1| type I restriction enzyme subunit R... 54 2e-05
gi|53732697|ref|ZP_00154929.2| COG0610: Type I site-specific res... 54 2e-05
gi|53729670|ref|ZP_00149994.2| COG0610: Type I site-specific res... 54 2e-05
gi|60492049|emb|CAH06811.1| putative type I restriction enzyme [... 54 3e-05
gi|48825428|ref|ZP_00286678.1| COG0610: Type I site-specific res... 54 4e-05
gi|15828903|ref|NP_326263.1| RESTRICTION MODIFICATION ENZYME SUB... 53 5e-05
gi|15829148|ref|NP_326508.1| RESTRICTION-MODIFICATION ENZYME SUB... 53 5e-05
gi|48839096|ref|ZP_00296031.1| COG0610: Type I site-specific res... 53 5e-05
gi|32033689|ref|ZP_00133984.1| COG0610: Type I site-specific res... 53 5e-05
gi|24371976|ref|NP_716018.1| type I restriction-modification sys... 53 6e-05
gi|28867251|ref|NP_789870.1| type I site-specific deoxyribonucle... 53 6e-05
gi|50590811|ref|ZP_00332158.1| COG0610: Type I site-specific res... 52 8e-05
gi|59713722|ref|YP_206497.1| type I restriction-modification sys... 52 8e-05
gi|48868625|ref|ZP_00321936.1| COG0610: Type I site-specific res... 52 1e-04
gi|59801121|ref|YP_207833.1| putative type I restriction enzyme ... 52 1e-04
gi|2581809|gb|AAC25971.1| endonuclease (R) subunit homolog [Myco... 52 1e-04
gi|30022537|ref|NP_834168.1| Type I restriction-modification sys... 52 1e-04
gi|17988794|ref|NP_541427.1| TYPE I RESTRICTION-MODIFICATION SYS... 52 1e-04
gi|23464209|gb|AAN34017.1| type I restriction-modification enzym... 52 1e-04
gi|46142217|ref|ZP_00147940.2| COG0610: Type I site-specific res... 52 1e-04
gi|23494172|dbj|BAC19139.1| putative type I restriction-modifica... 52 1e-04
gi|52079178|ref|YP_077969.1| HsdRI [Bacillus licheniformis ATCC ... 51 2e-04
gi|21228394|ref|NP_634316.1| type I restriction-modification sys... 51 2e-04
gi|19881310|gb|AAM00900.1| HsdR [Campylobacter jejuni] >gi|19698... 51 2e-04
gi|53731382|ref|ZP_00148539.2| COG0610: Type I site-specific res... 51 2e-04
gi|57865914|ref|YP_190017.1| type I restriction-modification sys... 50 3e-04
gi|37678997|ref|NP_933606.1| type I site-specific restriction-mo... 50 4e-04
gi|15672632|ref|NP_266806.1| type I restriction enzyme R protein... 50 5e-04
gi|24377275|gb|AAN58610.1| putative type I restriction-modificat... 50 5e-04
gi|22416338|emb|CAC87149.1| restriction-modification enzyme type... 50 5e-04
gi|13357652|ref|NP_077926.1| type I restriction enzyme R protein... 49 7e-04
gi|45522310|ref|ZP_00173825.1| COG0610: Type I site-specific res... 49 7e-04
gi|60492761|emb|CAH07535.1| putative type I restriction enzyme R... 49 0.001
gi|45510657|ref|ZP_00162989.1| COG0610: Type I site-specific res... 49 0.001
gi|1685100|gb|AAC44668.1| HSDR >gi|2126351|pir||JC5216 type I si... 49 0.001
gi|49243514|emb|CAG41938.1| putative type I restriction enzyme [... 48 0.002
gi|14245962|dbj|BAB56357.1| probable type I restriction enzyme r... 48 0.002
gi|57651196|ref|YP_185079.1| type I restriction-modification enz... 48 0.002
gi|49482437|ref|YP_039661.1| putative type I restriction enzyme ... 48 0.002
gi|34557504|ref|NP_907319.1| HSDR PROTEIN PROBABLE TYPE I RESTRI... 48 0.002
gi|42525882|ref|NP_970980.1| type I restriction-modification sys... 48 0.002
gi|15828549|ref|NP_325909.1| RESTRICTION-MODIFICATION ENZYME SUB... 47 0.003
gi|38234847|ref|NP_940614.1| Putative type I restriction/modific... 47 0.003
gi|49237263|ref|ZP_00331318.1| COG0610: Type I site-specific res... 47 0.004
gi|37680388|ref|NP_934997.1| putative type I site-specific restr... 47 0.004
gi|15611851|ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICT... 47 0.004
gi|1674181|gb|AAB96137.1| Type I Restriction Enzyme (fragment) [... 47 0.004
gi|47459118|ref|YP_015980.1| type I restriction enzyme r protein... 46 0.006
gi|21229939|ref|NP_635856.1| type I restriction-modification sys... 46 0.006
gi|55822674|ref|YP_141115.1| type I restriction-modification sys... 46 0.008
gi|22995100|ref|ZP_00039582.1| COG0610: Type I site-specific res... 46 0.008
gi|3057061|gb|AAC38345.1| HsdR [Lactococcus lactis] 46 0.008
gi|48832815|ref|ZP_00289843.1| COG0610: Type I site-specific res... 45 0.010
gi|22299773|ref|NP_683020.1| type I site-specific deoxyribonucle... 45 0.010
gi|15839314|ref|NP_300002.1| type I restriction-modification sys... 45 0.013
gi|56476904|ref|YP_158493.1| Type I restriction-modification sys... 45 0.013
gi|53765022|ref|ZP_00161201.2| COG0610: Type I site-specific res... 45 0.013
gi|28896554|ref|NP_802904.1| putative type I site-specific deoxy... 44 0.022
gi|28199934|ref|NP_780248.1| type I restriction-modification sys... 44 0.022
gi|5457726|emb|CAB49217.1| hsdR type I restriction-modification ... 44 0.022
gi|46120969|ref|ZP_00173785.2| COG0610: Type I site-specific res... 44 0.022
gi|56808771|ref|ZP_00366487.1| COG0610: Type I site-specific res... 44 0.029
gi|13622935|gb|AAK34612.1| putative type I site-specific deoxyri... 44 0.029
gi|48857009|ref|ZP_00311166.1| COG0610: Type I site-specific res... 44 0.037
gi|22996439|ref|ZP_00040695.1| COG0610: Type I site-specific res... 44 0.037
gi|45656817|ref|YP_000903.1| type I restriction enzyme [Leptospi... 44 0.037
gi|28262878|gb|EAA26382.1| hypothetical type I restriction enzym... 44 0.037
gi|22995174|ref|ZP_00039655.1| COG0610: Type I site-specific res... 44 0.037
gi|23492094|dbj|BAC17069.1| conserved hypothetical protein [Cory... 44 0.037
gi|22997649|ref|ZP_00041877.1| COG0610: Type I site-specific res... 43 0.049
gi|19746825|ref|NP_607961.1| putative type I site-specific deoxy... 43 0.049
gi|50914975|ref|YP_060947.1| Type I restriction-modification sys... 43 0.049
gi|51594886|ref|YP_069077.1| putative type I restriction enzyme,... 43 0.063
gi|4467404|emb|CAA31543.1| unnamed protein product [Escherichia ... 42 0.083
gi|20090965|ref|NP_617040.1| type I site-specific deoxyribonucle... 42 0.083
gi|21674690|ref|NP_662755.1| type I restriction system endonucle... 42 0.11
gi|15896079|ref|NP_349428.1| N-terminal HKD family nuclease fuse... 42 0.11
gi|32476945|ref|NP_869939.1| HsdR [Rhodopirellula baltica SH 1] ... 42 0.11
gi|29349943|ref|NP_813446.1| Type I restriction enzyme EcoR124II... 42 0.11
gi|31541736|gb|AAP57035.1| HsdR [Mycoplasma gallisepticum R] >gi... 42 0.14
gi|16799596|ref|NP_469864.1| hypothetical protein lin0521 [Liste... 42 0.14
gi|37528152|ref|NP_931497.1| Type I site-specific deoxyribonucle... 42 0.14
gi|38505927|ref|NP_942545.1| type I restriction-modification sys... 42 0.14
gi|15892796|ref|NP_360510.1| similarity to type I restriction en... 42 0.14
gi|46143838|ref|ZP_00133968.2| COG0610: Type I site-specific res... 42 0.14
gi|2313977|gb|AAD07892.1| type I restriction enzyme R protein (h... 41 0.18
gi|7226069|gb|AAF41246.1| type I restriction enzyme EcoR124II R ... 41 0.24
gi|56679311|gb|AAV95977.1| type I restriction-modification syste... 41 0.24
gi|34763948|ref|ZP_00144844.1| TYPE I RESTRICTION-MODIFICATION S... 41 0.24
gi|25532078|pir||AE1870 type I site-specific deoxyribonuclease [... 41 0.24
gi|57505321|ref|ZP_00371250.1| type I restriction enzyme R prote... 40 0.32
gi|48868205|ref|ZP_00321573.1| COG0610: Type I site-specific res... 40 0.32
gi|59800850|ref|YP_207562.1| putative type I site-specific deoxy... 40 0.32
gi|42630520|ref|ZP_00156059.1| COG0610: Type I site-specific res... 40 0.32
gi|46128931|ref|ZP_00154665.2| COG0610: Type I site-specific res... 40 0.32
gi|41720060|ref|ZP_00148899.1| COG4096: Type I site-specific res... 40 0.32
gi|48824781|ref|ZP_00286118.1| COG0610: Type I site-specific res... 40 0.41
gi|21227763|ref|NP_633685.1| type I restriction-modification sys... 40 0.54
gi|48839274|ref|ZP_00296207.1| COG4096: Type I site-specific res... 40 0.54
gi|32262969|gb|AAP78015.1| hypothetical protein HH1418 [Helicoba... 39 0.70
gi|52549588|gb|AAU83437.1| restriction enzymes type I helicase [... 39 0.92
gi|23482959|gb|EAA18785.1| inositol hexakisphosphate kinase [Pla... 39 0.92
>gi|57506070|ref|ZP_00371993.1| probable type I restriction enzyme
HsdR VC1765 [Campylobacter upsaliensis RM3195]
gb|EAL52469.1| probable type I restriction enzyme HsdR VC1765 [Campylobacter
upsaliensis RM3195]
Length = 980
Score = 105 bits (262), Expect = 8e-21
Identities = 80/209 (38%), Positives = 114/209 (54%), Gaps = 32/209 (15%)
Query: 619 IKTKAQFIINHLLYTKNKHDNKLFKSRAMLVCSGR----KGLLIYKKYLDQLISQLPIEE 674
I+ KA +I H K + K++AM+V S R K L +KKYL + +
Sbjct: 547 IEKKATIMIEHFFQNIYKKIGE--KAKAMIVTSSRENAVKYYLFFKKYLQENY------Q 598
Query: 675 QFDSIAAFSPFIQEGKSMVESDPMINGK-YAPYGTDKNRGIIKALNDD--KQFNIRLLIV 731
Q+ ++ AFS D I+GK Y+ G + G +A+ D K+ N R LIV
Sbjct: 599 QYQALVAFS-----------GDKEIDGKNYSEVGLN---GFSEAMLKDEFKKDNYRFLIV 644
Query: 732 ADKLQTGFDEPSLSIMYVDKKLKGANAVQTLSRLSRISKDKEATAIIDFVNTEKDMDFIF 791
A K QTGFDEP L MYVDK+L+G NAVQTLSRL+RI ++KE T ++DF NT +++ F
Sbjct: 645 AQKYQTGFDEPLLHTMYVDKRLEGINAVQTLSRLNRICQNKEDTCVLDFENTHEEIRESF 704
Query: 792 NLYKHSTSLRD---LQDTQTLISSLIMAG 817
+ + T L++ + + TL S L G
Sbjct: 705 STFYGQTYLKEPTNIDNIYTLKSELFDYG 733
Score = 103 bits (257), Expect = 3e-20
Identities = 86/291 (29%), Positives = 128/291 (43%), Gaps = 77/291 (26%)
Query: 271 PRTHQWDTIVSVLKDLISPQHMKSFKSENRYNYLIQHAAGSGKSLTIACLVYFLYKLEIN 330
PR HQ+D + +LKD + + YLIQH+AGSGKS +IA L + L L
Sbjct: 270 PRFHQFDVVRKLLKD--------AKEKGVGQRYLIQHSAGSGKSNSIAWLAHNLASLHRV 321
Query: 331 NKHK----FDTIVIMNDRSQLDAQLGDVVIKFLTSNGITNFCRPKSSKQLQNEILSGKNR 386
HK FD+I+++ DR LD Q+ + V F + + + SKQL+ + GK +
Sbjct: 322 ENHKEKKIFDSILVVTDRKVLDRQIQENVKSFTENRNLVE-AITEGSKQLKAALKEGK-K 379
Query: 387 VVITTMQKFSQLLPNKSXXXXXXXXXXXXXXXXXXXXYANSXXXXXXXNNEDDNQFSFKS 446
+++TT+QKF + D ++
Sbjct: 380 IIVTTIQKFPYIA---------------------------------------DEITHLQN 400
Query: 447 NSVAIISDEAHRSHGKSTTEKLHEFLSG--------------------NTRQSSKITYFS 486
+ AII DEAH S E++ + +S N + +YF+
Sbjct: 401 KTFAIIIDEAHSSQSGKNAEEMGKAISNKDDKETSEMDLEEELIKIIENKKFQKNASYFA 460
Query: 487 FTCTPTTQCLEMFG--IASKGDK--IPFYTYSMHNALEDKLILDVIKQFST 533
FT TP + LEMFG G+K IPF+ YSM A+E+ ILDV+K + T
Sbjct: 461 FTATPKPKTLEMFGNPCEINGEKKFIPFHLYSMKQAIEEGFILDVLKGYIT 511
>gi|551948|gb|AAA98302.1| unknown [Geobacillus stearothermophilus]
Length = 405
Score = 103 bits (256), Expect = 4e-20
Identities = 80/277 (28%), Positives = 129/277 (45%), Gaps = 20/277 (7%)
Query: 262 VQNSFKDFKPRTHQWDTIVSVLKDLISPQHMKSFKSENRYNYLIQHAAGSGKSLTIACLV 321
V+ S K PR HQ D + +++D+ + + NYLIQH+AGSGKS +IA L
Sbjct: 18 VKTSSKLIFPRYHQLDVVRKLVEDVR--------QKGSGENYLIQHSAGSGKSNSIAWLA 69
Query: 322 YFLYKLEI-NNKHKFDTIVIMNDRSQLDAQLGDVVIKFLTSNGITNFCRPK-SSKQLQNE 379
Y L L +N+ F +++++ DR+ LD QL + F + G+ K +SK L++
Sbjct: 70 YHLASLHNEDNESIFTSVIVVTDRTVLDRQLQQTISSFDHTTGLVETIDDKKTSKDLRDA 129
Query: 380 ILSGKNRVVITTMQKFSQLLPNKSXXXXXXXXXXXXXXXXXXXXYANSXXXXXXXNNEDD 439
I +GK R++ITT+QKF + + + E+
Sbjct: 130 INNGK-RIIITTLQKFPVIYEEVEVNKGSRFAVIVDEAHSSQTGKSAKKLKAALADTEE- 187
Query: 440 NQFSFKSNSVAIISDEAHRSHGKSTTEKLHEFLSGNTRQSSKITYFSFTCTPTTQCLEMF 499
A + E E + E L+ ++ +++F+FT TP + LEMF
Sbjct: 188 -----ALREYAELEAEIEAEQLDFEDEIVQELLTHGRHKN--LSFFAFTATPKEKTLEMF 240
Query: 500 GIAS-KGDKIPFYTYSMHNALEDKLILDVIKQFSTLR 535
G G PF+ YSM A+E+ ILDV++ + T +
Sbjct: 241 GTKQPDGTFKPFHIYSMRQAIEEGFILDVLQNYMTYK 277
>gi|21229078|ref|NP_635000.1| type I restriction-modification system
restriction subunit [Methanosarcina mazei Go1]
gb|AAM32672.1| type I restriction-modification system restriction subunit
[Methanosarcina mazei Goe1]
Length = 997
Score = 101 bits (252), Expect = 1e-19
Identities = 85/286 (29%), Positives = 128/286 (44%), Gaps = 73/286 (25%)
Query: 271 PRTHQWDTIVSVLKDLISPQHMKSFKSENRYNYLIQHAAGSGKSLTIACLVYFLYKLEIN 330
PR HQ D + +L H + + RY L+QH+AGSGKS +IA L + L L+ +
Sbjct: 292 PRYHQLDVVRKLLA------HAEWHGAGMRY--LVQHSAGSGKSNSIAWLAHQLISLKKD 343
Query: 331 NKHKFDTIVIMNDRSQLDAQLGDVVIKFLTSNGITNFCRPKSSKQLQNEILSGKNRVVIT 390
+K FD+I+++ DR LD Q+ D + +F + S L+ I SGK +++I+
Sbjct: 344 DKEIFDSIIVITDRRVLDKQIRDTIKQFAQVGSTVG--HAERSGDLRKFIESGK-KIIIS 400
Query: 391 TMQKFSQLLPNKSXXXXXXXXXXXXXXXXXXXXYANSXXXXXXXNNEDDNQFSFKSNSVA 450
T+QKF +L D+ + A
Sbjct: 401 TVQKFPFIL--------------------------------------DEIGNEHRGRKFA 422
Query: 451 IISDEAHRSHGKSTTEKLHEFLSGNTRQSS--------------------KITYFSFTCT 490
II DEAH S G T + E LS + Q +YF+FT T
Sbjct: 423 IIIDEAHSSQGGRTAAAMSEALSDSKDQKDPEDTINDALQKRMEARKMLPNASYFAFTAT 482
Query: 491 PTTQCLEMFGIASK-GDKI---PFYTYSMHNALEDKLILDVIKQFS 532
P + LE+FG K GDKI PF+ Y+M A+++ ILDV++ ++
Sbjct: 483 PKNKTLELFGEPYKDGDKIKHRPFHNYTMKQAIQEGFILDVLRYYT 528
Score = 80.5 bits (197), Expect = 3e-13
Identities = 64/192 (33%), Positives = 93/192 (48%), Gaps = 15/192 (7%)
Query: 619 IKTKAQFIINHLLYTKNKHDNKLFKSRAMLVCSG-RKGLLIYKKYLDQLISQLPIEEQFD 677
I+ KA+ I++H + ++RAM+V +G + + Y D L L + +
Sbjct: 566 IRLKAEIIVDHFQEQVIALNKIGGQARAMVVTNGIERAIQYYHAIRDYL---LELNSPYK 622
Query: 678 SIAAFSPFIQEGKSMVESDPMINGKYAPYGTDKNRGIIKALNDDKQFNIRLLIVADKLQT 737
+I AFS + G V ++ +NG + DK ++ R LI ADK QT
Sbjct: 623 AIVAFSGEHEYGGVKV-TEATLNGFPSSQIEDKI----------EEEPYRFLICADKFQT 671
Query: 738 GFDEPSLSIMYVDKKLKGANAVQTLSRLSRISKDKEATAIIDFVNTEKDMDFIFNLYKHS 797
G+DEP L MYVDK L G AVQTLSRL+R K ++DF+N + F+ Y +
Sbjct: 672 GYDEPLLHTMYVDKVLSGIKAVQTLSRLNRAHPKKHDVFVLDFMNDTDTIQDAFSDYYRT 731
Query: 798 TSLRDLQDTQTL 809
T L D D L
Sbjct: 732 TVLSDETDPNKL 743
>gi|48895667|ref|ZP_00328651.1| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Trichodesmium erythraeum IMS101]
Length = 991
Score = 99.8 bits (247), Expect = 4e-19
Identities = 74/204 (36%), Positives = 108/204 (52%), Gaps = 18/204 (8%)
Query: 607 QYEDETIQDQMLIKTKAQFIINHLLYTKNKHDNKLFKSRAMLVCSGRKGLLIYKKYLDQL 666
QY +E DQ I+ K++ +I H L K++AM+V + K + YKK D+
Sbjct: 547 QYVEE---DQESIRKKSEVMIEHFLSKVIAQGKINGKAKAMVVSNSIKSAIYYKKAFDKY 603
Query: 667 ISQLPIEEQFDSIAAFSPFIQ-EGKSMVESDPMINGKYAPYGTDKNRGIIKALNDDKQFN 725
+ + + + +I AFS + +GK E++ +NG + T+K ND K
Sbjct: 604 LREK--KSDYQTIVAFSGSKEIDGKK--ENESSMNGFSSSKITEK-------FNDSKY-- 650
Query: 726 IRLLIVADKLQTGFDEPSLSIMYVDKKLKGANAVQTLSRLSRISKDKEATAIIDFVNTEK 785
R LIVA+K QTGFDEP L MYVDK L AVQTLSRL+R + K T ++DFVN+
Sbjct: 651 -RFLIVANKYQTGFDEPLLHTMYVDKVLSDVKAVQTLSRLNRSCEGKTDTFVLDFVNSAD 709
Query: 786 DMDFIFNLYKHSTSLRDLQDTQTL 809
++ F Y +T L + D+ L
Sbjct: 710 EIQRAFEPYYKTTILSEETDSDRL 733
Score = 94.4 bits (233), Expect = 2e-17
Identities = 78/287 (27%), Positives = 129/287 (44%), Gaps = 72/287 (25%)
Query: 271 PRTHQWDTIVSVLKDLISPQHMKSFKSENRYNYLIQHAAGSGKSLTIACLVYFLYKLE-- 328
PR HQ D + +L K NRY LIQH+AGSGKS +I L + L +L+
Sbjct: 285 PRYHQLDLVKQLLTSA------KKHGVGNRY--LIQHSAGSGKSNSITWLSHQLVELKNI 336
Query: 329 INNKHKFDTIVIMNDRSQLDAQLGDVVIKFLTSNGITNFCRPKSSKQLQNEILSGKNRVV 388
++ FD+++++ DR LD Q+ + + +F + + K+SK+L++ L K +++
Sbjct: 337 TEKENIFDSVLVVTDRKILDKQIRENIQQFAQEDKVVE--ATKNSKKLKS-ALENKRKII 393
Query: 389 ITTMQKFSQLLPNKSXXXXXXXXXXXXXXXXXXXXYANSXXXXXXXNNEDDNQFSFKSNS 448
ITT+QKF ++ S +
Sbjct: 394 ITTVQKFPYVVKEIQ---------------------------------------SLSDHK 414
Query: 449 VAIISDEAHRSHGKSTTEKLHEFLSGNTRQSSKIT------------------YFSFTCT 490
AII DEAH S + + E LS + + T Y++FT T
Sbjct: 415 FAIIIDEAHSSQTGKSAASMSESLSKKDSEVEETTEDKIIRIIESQKLCPNANYYAFTAT 474
Query: 491 PTTQCLEMFGIAS--KGDKIPFYTYSMHNALEDKLILDVIKQFSTLR 535
P + LE+FG+ + G PF++YSM A+E+ IL+V++ ++T +
Sbjct: 475 PKNKTLELFGVKNPEDGKFYPFHSYSMKQAIEEGFILNVLQHYTTYK 521
>gi|53718588|ref|YP_107574.1| hypothetical protein BPSL0945
[Burkholderia pseudomallei K96243]
emb|CAH34941.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
Length = 1037
Score = 98.6 bits (244), Expect = 1e-18
Identities = 80/293 (27%), Positives = 126/293 (42%), Gaps = 71/293 (24%)
Query: 271 PRTHQWDTIVSVLKDLISPQHMKSFKSENRYNYLIQHAAGSGKSLTIACLVYFLYKLEIN 330
PR HQ D ++ D+++ + YLIQH+AGSGK+ +IA +FL L +
Sbjct: 279 PRYHQLDATRRLVADVLA--------QGSGQRYLIQHSAGSGKTNSIAWTAHFLADLHDD 330
Query: 331 NKHK-FDTIVIMNDRSQLDAQLGDVVIKFLTSNG-ITNFCRPKSSKQLQ-NEILSGKNRV 387
N HK FD++++++DR+ LDAQL + + F + G + + SK Q + L ++
Sbjct: 331 NHHKLFDSVLVVSDRTVLDAQLQEAIFDFERTTGVVATITKEHGSKSAQLGQALKDGKKI 390
Query: 388 VITTMQKFSQLLPNKSXXXXXXXXXXXXXXXXXXXXYANSXXXXXXXNNEDDNQFSFKSN 447
++ T+Q F L +
Sbjct: 391 IVCTIQTFPFALQAVQELAAT------------------------------------EGK 414
Query: 448 SVAIISDEAHRSHGKSTTEKLHEFLSG----------------------NTRQSSK-ITY 484
A+I+DEAH S KL + LS R +K +TY
Sbjct: 415 RFAVIADEAHCSQTGEAAAKLKQLLSAEEWADLQDGGEIDTEALLAAQMEARTGAKGLTY 474
Query: 485 FSFTCTPTTQCLEMFG-IASKGDKIPFYTYSMHNALEDKLILDVIKQFSTLRL 536
+FT TP + LE+FG G PF+ YSM A+E+ ILDV+K +++ +L
Sbjct: 475 VAFTATPKQKTLELFGRPGPDGLPEPFHVYSMRQAIEEGFILDVLKNYTSYKL 527
Score = 82.8 bits (203), Expect = 6e-14
Identities = 71/224 (31%), Positives = 103/224 (45%), Gaps = 34/224 (15%)
Query: 599 NGIDFDDDQYEDETIQDQML---------IKTKAQFIINHLLYTKNKHDNKLFKSRAMLV 649
NG ++D+ Q E ++ I K Q ++ H Y +N K++AM+V
Sbjct: 534 NGQEYDEKQVERSAAMKGIMQWVRLHPYNIAQKVQIVVEH--YRENVQPLLDGKAKAMVV 591
Query: 650 CSGRKGLLIYKKYLDQLISQLPIEEQFDSIAAFSPFIQEGKSMV--------ESDPMING 701
+ RK + ++K + I + + AFS I + +S E +P +NG
Sbjct: 592 VASRKEAVRWQKAIRAYIEKR--NYPLGVLVAFSGEIDDPESYPAPVTEASKELNPGLNG 649
Query: 702 KYAPYGTDKNRGIIKALNDDKQFNIRLLIVADKLQTGFDEPSLSIMYVDKKLKGANAVQT 761
R I A + + LL+VA+K QTGFD+P L MYVDK L G AVQT
Sbjct: 650 ----------RDIRDAFAEPEY---HLLLVANKFQTGFDQPLLCGMYVDKMLGGIQAVQT 696
Query: 762 LSRLSRISKDKEATAIIDFVNTEKDMDFIFNLYKHSTSLRDLQD 805
LSRL+R K+ T I+DFVN D+ F Y + L D
Sbjct: 697 LSRLNRAHPGKDTTYILDFVNEAGDILKAFKTYYETAELEATTD 740
>gi|56459753|ref|YP_155034.1| Type I site-specific
restriction-modification system, R subunit (helicase)
[Idiomarina loihiensis L2TR]
gb|AAV81485.1| Type I site-specific restriction-modification system, R subunit
(helicase) [Idiomarina loihiensis L2TR]
Length = 1058
Score = 97.8 bits (242), Expect = 2e-18
Identities = 83/295 (28%), Positives = 132/295 (44%), Gaps = 76/295 (25%)
Query: 271 PRTHQWDTIVSVLKDLISPQHMKSFKSENRYNYLIQHAAGSGKSLTIACLVYFLYKLEIN 330
PR HQWD V+ LI + S+ YLIQH+AGSGKS +IA + L L +
Sbjct: 289 PRYHQWD----VVNQLIDTTRREGPGSK----YLIQHSAGSGKSNSIAWTAHQLSSLYAD 340
Query: 331 NKHK-FDTIVIMNDRSQLDAQLGDVVIKFLTSNG----ITNFCRPKSSKQLQNEILSGKN 385
+ K F++IV++ DR+ LD+QL + + +F ++G IT KS + E L +
Sbjct: 341 DGSKLFNSIVVVTDRTVLDSQLQNTIRQFEHADGVVRAITRDVGNKSKSEQLAEALQEQV 400
Query: 386 RVVITTMQKFSQLLPNKSXXXXXXXXXXXXXXXXXXXXYANSXXXXXXXNNEDDNQFSFK 445
R+++ T+Q F L + D + +
Sbjct: 401 RIIVVTIQTFPALY------------------------------------DAIDKYPALQ 424
Query: 446 SNSVAIISDEAHRSHGKSTTEKLHEFLSGNTRQ-------------------SSKITYFS 486
+ + AII+DEAH S ++ KL L + + + +I+Y++
Sbjct: 425 AGNYAIIADEAHSSQTGASASKLKALLGSDRPEGDDISAEELLDAAVQARMPNERISYYA 484
Query: 487 FTCTPTTQCLEMFG--------IASKGDKIPFYTYSMHNALEDKLILDVIKQFST 533
FT TP + LE+FG I+ F+ YSM A+E+ ILDV+K ++T
Sbjct: 485 FTATPKGKTLELFGRPDDPHSPISDDNKPKAFHVYSMRQAIEEGFILDVLKNYTT 539
Score = 89.7 bits (221), Expect = 5e-16
Identities = 69/212 (32%), Positives = 106/212 (49%), Gaps = 20/212 (9%)
Query: 619 IKTKAQFIINHLLYTKNKHDNKLFKSRAMLVCSGRKGLLIYKKYLDQLISQLPIEEQFDS 678
I + + I+ H + +N +++AM+V R+ + Y+ + I IE+ +
Sbjct: 576 INQRVEIIVEH--FRENVRHLLNGQAKAMVVTGSRQEAVRYQLAMTSYI----IEKGYQD 629
Query: 679 IAAFSPFIQEGKSMVESDPMINGKYAPYGTDKNRGII-----KALNDDKQFNIRLLIVAD 733
+ A F E V +D I Y N G+ KAL+ D FN+ +IVA+
Sbjct: 630 VHALVAFSGE----VPADDYITESVTEYDKKLNPGLNGRKHDKALDSD-DFNV--MIVAN 682
Query: 734 KLQTGFDEPSLSIMYVDKKLKGANAVQTLSRLSRISKDKEATAIIDFVNTEKDMDFIFNL 793
K QTGFD+P L MYVDKKL+G VQTLSRL+R K+ T ++DF N+E+D+ F
Sbjct: 683 KYQTGFDQPKLCAMYVDKKLQGVECVQTLSRLNRTFPGKDQTFVLDFFNSEEDILESFKP 742
Query: 794 YKHSTSLRDLQDTQTLISSLIMAGRSIQKVFE 825
Y + L + D L IM+ + ++E
Sbjct: 743 YYTTAELDSVTDPHILFD--IMSKLDEEHIYE 772
>gi|53800416|ref|ZP_00359771.1| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Xylella fastidiosa Dixon]
Length = 1023
Score = 97.8 bits (242), Expect = 2e-18
Identities = 80/300 (26%), Positives = 133/300 (43%), Gaps = 84/300 (28%)
Query: 267 KDFKPRTHQWDTIVSVLKDLISPQHMKSFKSENRYNYLIQHAAGSGKSLTIACLVYFLYK 326
K PR HQ T+ ++L+ + K YLIQH+AGSGKS TIA L + L +
Sbjct: 290 KQIFPRFHQLRTVRALLRRTRTDGVGK--------RYLIQHSAGSGKSNTIAWLAHQLVE 341
Query: 327 LEINN---KHKFDTIVIMNDRSQLDAQLGDVVIKFLTSNGITNFCRPKSSKQLQNEILSG 383
L + + +FD+I+++ DR LD Q+ D++ + + F ++++L+ + G
Sbjct: 342 LRRKDDPLRVQFDSIIVITDRRTLDKQIADIIKGY--DHVAAIFGHSDNAQELREYLRRG 399
Query: 384 KNRVVITTMQKFSQLLPNKSXXXXXXXXXXXXXXXXXXXXYANSXXXXXXXNNEDDNQFS 443
K ++++TT+QKF +L D
Sbjct: 400 K-KIIVTTVQKFPFIL---------------------------------------DELGD 419
Query: 444 FKSNSVAIISDEAHRSHGKSTTEKLHEFLSGNTRQS------------------------ 479
A++ DEAH S G TT ++HE L G +
Sbjct: 420 LSGKRFALLIDEAHSSQGGKTTARMHEALGGKVAEEEFEEDSTQDAVNAEIERRIASRKL 479
Query: 480 -SKITYFSFTCTPTTQCLEMFGIAS-KGDKIPF-----YTYSMHNALEDKLILDVIKQFS 532
+ +YF+FT TP + LE+FG + GDK+ F TY+ A+++K ILDV+++++
Sbjct: 480 LANASYFAFTATPKNKTLELFGERTLVGDKVQFRSPEELTYTTKQAIQEKFILDVVEKYT 539
Score = 80.5 bits (197), Expect = 3e-13
Identities = 61/181 (33%), Positives = 94/181 (51%), Gaps = 15/181 (8%)
Query: 619 IKTKAQFIINHLLYTKNKHDNKLFKSRAMLVCSGRKGLLIYKKYLDQLISQLPIEEQFDS 678
I+ KA+ +++H + ++RAM+VC+G + Y + + ++Q I+ + +
Sbjct: 577 IRRKAEIMVDHFIACVAGKQIIGGQARAMIVCNGIARAIDYWREVSDYLTQ--IKSPYKA 634
Query: 679 IAAFS-PFIQEGKSMVESDPMINGKYAPYGTDKNRGIIKALNDDKQFNIRLLIVADKLQT 737
I A+S F G+ E+D +NG ++ I + L D R LIVA+K T
Sbjct: 635 IVAYSGSFEIGGQKKTEAD--LNGF-------PSKKIPENLKKDPY---RFLIVANKFVT 682
Query: 738 GFDEPSLSIMYVDKKLKGANAVQTLSRLSRISKDKEATAIIDFVNTEKDMDFIFNLYKHS 797
GFDEP L MYVDK L G AVQTLSRL+R K T ++DF + + + F Y +
Sbjct: 683 GFDEPLLHTMYVDKPLAGVLAVQTLSRLNRAHPQKRDTFVLDFADNAEAVKAAFQDYYRA 742
Query: 798 T 798
T
Sbjct: 743 T 743
>gi|15839310|ref|NP_299998.1| type I restriction-modification system
endonuclease [Xylella fastidiosa 9a5c]
gb|AAF85757.1| type I restriction-modification system endonuclease [Xylella
fastidiosa 9a5c]
pir||A82516 type I restriction-modification system endonuclease XF2721
[imported] - Xylella fastidiosa (strain 9a5c)
Length = 1025
Score = 97.1 bits (240), Expect = 3e-18
Identities = 78/300 (26%), Positives = 127/300 (42%), Gaps = 84/300 (28%)
Query: 267 KDFKPRTHQWDTIVSVLKDLISPQHMKSFKSENRYNYLIQHAAGSGKSLTIACLVYFLYK 326
K PR HQ T+ ++L+ ++ YLIQH+AGSGKS TIA L + L +
Sbjct: 292 KQIFPRFHQLRTVRALLR--------RAHSDGVGRRYLIQHSAGSGKSNTIAWLAHQLVE 343
Query: 327 LEINN---KHKFDTIVIMNDRSQLDAQLGDVVIKFLTSNGITNFCRPKSSKQLQNEILSG 383
L + +FD+I+++ DR LD Q+ D + + + + + Q E L
Sbjct: 344 LRRKDDPMTPQFDSIIVITDRRALDTQIADTIKGY---DHVAAIFGHSDNAQELREYLRR 400
Query: 384 KNRVVITTMQKFSQLLPNKSXXXXXXXXXXXXXXXXXXXXYANSXXXXXXXNNEDDNQFS 443
++++TT+QKF +L D
Sbjct: 401 DKKIIVTTVQKFPFIL---------------------------------------DELGD 421
Query: 444 FKSNSVAIISDEAHRSHGKSTTEKLHEFLSGNTRQS------------------------ 479
A++ DEAH S G TT ++HE L G +
Sbjct: 422 LSGKRFALLIDEAHSSQGGKTTARMHEALGGKVAEEEFEEDRTQDAVNAEIERRIASRKL 481
Query: 480 -SKITYFSFTCTPTTQCLEMFGIASK-GDKIPF-----YTYSMHNALEDKLILDVIKQFS 532
+ +YF+FT TP + LE+FG ++ GDK+ F TY+ A+++K ILDV+++++
Sbjct: 482 LANASYFAFTATPKNKTLELFGEKTRVGDKVQFRSPEELTYTTKQAIQEKFILDVVEKYT 541
Score = 80.1 bits (196), Expect = 4e-13
Identities = 61/181 (33%), Positives = 92/181 (50%), Gaps = 15/181 (8%)
Query: 619 IKTKAQFIINHLLYTKNKHDNKLFKSRAMLVCSGRKGLLIYKKYLDQLISQLPIEEQFDS 678
I+ KA+ +++H + ++RAM+VC+G + Y + + ++Q I+ + +
Sbjct: 579 IRRKAEIMVDHFIAEVVGKQKIGGQARAMIVCNGIARAIDYWREVSDYLTQ--IKSPYRA 636
Query: 679 IAAFS-PFIQEGKSMVESDPMINGKYAPYGTDKNRGIIKALNDDKQFNIRLLIVADKLQT 737
I A+S F G+ E+D +NG ++ I L D R LIVA+K T
Sbjct: 637 IVAYSGSFEIGGQKKTEAD--LNGF-------PSKDIPDTLKKDPY---RFLIVANKFVT 684
Query: 738 GFDEPSLSIMYVDKKLKGANAVQTLSRLSRISKDKEATAIIDFVNTEKDMDFIFNLYKHS 797
GFDEP L MYVDK L G AVQTLSRL+R K T ++DF + + + F Y
Sbjct: 685 GFDEPLLHTMYVDKPLAGVLAVQTLSRLNRAHPQKHDTFVLDFADNAEAVKAAFQDYYRV 744
Query: 798 T 798
T
Sbjct: 745 T 745
>gi|50086398|ref|YP_047908.1| putative type I
restriction-modification system (HsdR) [Acinetobacter
sp. ADP1]
emb|CAG70086.1| putative type I restriction-modification system (HsdR)
[Acinetobacter sp. ADP1]
Length = 1020
Score = 96.7 bits (239), Expect = 4e-18
Identities = 74/271 (27%), Positives = 129/271 (47%), Gaps = 18/271 (6%)
Query: 271 PRTHQWDTIVSVLKDLISPQHMKSFKSENRYNYLIQHAAGSGKSLTIACLVYFLYKL-EI 329
PR HQ D + + K H K+ + + +NYLIQH+AGSGKS TIA L + L +
Sbjct: 282 PRYHQLDAVRKLTK------HSKA--NGSGHNYLIQHSAGSGKSNTIAWLAHQLASMHNA 333
Query: 330 NNKHKFDTIVIMNDRSQLDAQLGDVVIKFLTSNGITNFCRPKSSKQLQNEILSGKNRVVI 389
++K F++I+++ DR LD QL + + +F +G+ +++ QL N + S ++I
Sbjct: 334 DDKKIFNSIIVITDRIVLDRQLQETIAQFEHKDGVVQKI-DENTLQLTNALASNV-PIII 391
Query: 390 TTMQKFSQLLPN-----KSXXXXXXXXXXXXXXXXXXXXYANSXXXXXXXNNEDDNQFSF 444
TT+QKF ++ + K +++ + N+
Sbjct: 392 TTIQKFPYIMQSIRTQAKKGIKVDLSTEGKNFAVIVDEAHSSQSGETAMELRKILNKDGI 451
Query: 445 KSNSVAIISDEAHRSHGKSTTE-KLHEFLSGNTR-QSSKITYFSFTCTPTTQCLEMFGIA 502
+S D+ + T + K H F + R + +++F+FT TP + L F A
Sbjct: 452 ESAIAQEFLDDGDEDESELTDDVKKHLFAEASKRSRQPNLSFFAFTATPKWKTLACFDEA 511
Query: 503 SKGDKIPFYTYSMHNALEDKLILDVIKQFST 533
+ PF+ YSM A+++ ILDV+ ++T
Sbjct: 512 GDNGEAPFHHYSMKQAIQEGFILDVLANYTT 542
Score = 88.6 bits (218), Expect = 1e-15
Identities = 63/171 (36%), Positives = 94/171 (54%), Gaps = 20/171 (11%)
Query: 643 KSRAMLVCSGRKGLLIYKKYLDQLISQLPIEEQFDSIAAFSPFIQEGKSMVE----SDPM 698
+++AM+V + R+ + YK D+ I E+++ I + F GK V+ ++P
Sbjct: 601 RAKAMVVTNSREQAVRYKLAFDEYIK----EKKYTGIKSLVAF--SGKLEVDGTEYTEPK 654
Query: 699 INGKYAPYGTDKNRGIIKALNDDKQFNIRLLIVADKLQTGFDEPSLSIMYVDKKLKGANA 758
+NG D+ DD Q +L+VA+K QTGFD+P L M+VDKKL G A
Sbjct: 655 MNGFKETELPDQFD------TDDYQ----VLLVAEKYQTGFDQPLLHTMFVDKKLSGIQA 704
Query: 759 VQTLSRLSRISKDKEATAIIDFVNTEKDMDFIFNLYKHSTSLRDLQDTQTL 809
VQTLSRL+R + KE T ++DFVNT +D+ F + T L D+ + Q L
Sbjct: 705 VQTLSRLNRCAYGKEDTFVLDFVNTLEDIYKAFKPFYEQTKLGDIPNEQKL 755
>gi|49243380|emb|CAG41797.1| putative type I restriction enzyme
protein [Staphylococcus aureus subsp. aureus MSSA476]
ref|YP_042158.1| putative type I restriction enzyme protein [Staphylococcus aureus
subsp. aureus MSSA476]
Length = 1012
Score = 96.7 bits (239), Expect = 4e-18
Identities = 80/296 (27%), Positives = 125/296 (42%), Gaps = 80/296 (27%)
Query: 271 PRTHQWDTIVSVLKDLISPQHMKSFKSENRYNYLIQHAAGSGKSLTIACLVYFLYKLEIN 330
PR HQ D + ++ D QH K NYLIQH+AGSGKS +IA L Y L L N
Sbjct: 275 PRYHQLDVVKKLISDT---QHHGPGK-----NYLIQHSAGSGKSNSIAWLAYHLASLHSN 326
Query: 331 NKHK-FDTIVIMNDRSQLDAQLGDVVIKFLTSNGITNFCRPKSSKQLQNEILSGKNRVVI 389
+ +++++ DR+ LD QL + ++ F + G + Q ++ + +++I
Sbjct: 327 EDQPIYSSVIVVTDRTVLDRQLQNTLMSFEHTVGQVETIGDNKTSQDLKTAINDQKKIII 386
Query: 390 TTMQKFSQLLPNKSXXXXXXXXXXXXXXXXXXXXYANSXXXXXXXNNEDDNQFSFKSNSV 449
TT+QKF + +E DN S
Sbjct: 387 TTLQKFPVIY------------------------------------DEIDNT---AGRSF 407
Query: 450 AIISDEAHRSHGKSTTEKLHEFLSG-------------------------------NTRQ 478
AI+ DEAH S S+ +KL L+ + Q
Sbjct: 408 AILVDEAHSSQTGSSAQKLKHALADKEASLKEYQEFEESVEDQSLDDQDQIVQTLLSQGQ 467
Query: 479 SSKITYFSFTCTPTTQCLEMFGI-ASKGDKIPFYTYSMHNALEDKLILDVIKQFST 533
+++F+FT TP + +EMFG + G PF+ YSM A+E+ IL+V++ + T
Sbjct: 468 HDNLSFFAFTATPKEKTIEMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMT 523
Score = 89.7 bits (221), Expect = 5e-16
Identities = 65/195 (33%), Positives = 107/195 (54%), Gaps = 13/195 (6%)
Query: 643 KSRAMLVCSGRKGLLIYKKYLDQLISQLPIEEQFDSIAAFSPFIQEGKSMVESDPMINGK 702
+ +AM+V + R + Y + + I + + D + AFS +++ + ++P +N
Sbjct: 582 RGKAMIVTASRLHAVRYMQEFKKYIKEKGYTDM-DVLVAFSGTVEDD-GIEYTEPKMNLT 639
Query: 703 YAPYGTDKNRGIIKALNDDKQFNIRLLIVADKLQTGFDEPSLSIMYVDKKLKGANAVQTL 762
++ +N+ +K + FN LLIVA+K QTGFDEP L M+VDK+L+G AVQTL
Sbjct: 640 HSGERIQENQ--LKEAFHSEDFN--LLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTL 695
Query: 763 SRLSRISKDKEATAIIDFVNTEKDMDFIFNLYKHSTSLRD------LQDTQTLISSL-IM 815
SRL+R K T I+DFVNT +++ F + +TSL++ + DTQ+ + I
Sbjct: 696 SRLNRTMPGKTDTFILDFVNTAEEIYEAFQPFYEATSLKEEININLIYDTQSKLRKFHIY 755
Query: 816 AGRSIQKVFEKEKRA 830
IQ V + ++A
Sbjct: 756 NDDDIQTVMKLNRQA 770
>gi|38505824|ref|NP_942394.1| type I site-specific deoxyribonuclease
chain R [Synechocystis sp. PCC 6803]
dbj|BAD02057.1| type I site-specific deoxyribonuclease chain R [Synechocystis sp.
PCC 6803]
Length = 989
Score = 95.9 bits (237), Expect = 6e-18
Identities = 83/299 (27%), Positives = 132/299 (43%), Gaps = 78/299 (26%)
Query: 263 QNSFKDFKPRTHQWDTIVSVLKDLISPQHMKSFKSENRYNYLIQHAAGSGKSLTIACLVY 322
+ K PR HQ ++V++ L++ YLIQH+AGSGKS +IA L +
Sbjct: 266 RKKLKQVFPRYHQ----LTVVRQLLATAKQDGVGKR----YLIQHSAGSGKSNSIAWLAH 317
Query: 323 FLYKLEINNKHKFDTIVIMNDRSQLDAQLGDVVIKFLTSNGITNFCRPKSSKQLQNEILS 382
L LE + K FD+I+++ DR LD Q+ + + +F + + S L+ I
Sbjct: 318 QLVGLEQDGKALFDSIIVVTDRQVLDRQIRNTIKQFAQVSATVG--HAERSGDLRQFIKD 375
Query: 383 GKNRVVITTMQKFSQLLPNKSXXXXXXXXXXXXXXXXXXXXYANSXXXXXXXNNEDDNQF 442
GK +V+ITT+QKF +L NE ++
Sbjct: 376 GK-KVIITTVQKFPFIL------------------------------------NEIGDE- 397
Query: 443 SFKSNSVAIISDEAHRSHGKSTTEKLHEFLSGNT------------------------RQ 478
+ + AI+ DEAH S G TT ++ L G +
Sbjct: 398 -HRQSKFAIVIDEAHSSQGGKTTAAMNRVLEGTASYNVANEEEEETTEDKINRILEGRKM 456
Query: 479 SSKITYFSFTCTPTTQCLEMFG-IASKGD----KIPFYTYSMHNALEDKLILDVIKQFS 532
+ +YF+FT TP + LE+FG A + D PF++Y+M A+++ ILDV+K ++
Sbjct: 457 VTNASYFAFTATPKNKTLEIFGQPAPQPDGTVKHYPFHSYTMKQAIQEGFILDVLKSYT 515
Score = 82.4 bits (202), Expect = 7e-14
Identities = 63/195 (32%), Positives = 96/195 (48%), Gaps = 15/195 (7%)
Query: 616 QMLIKTKAQFIINHLLYTKNKHDNKLFKSRAMLVCSG-RKGLLIYKKYLDQLISQLPIEE 674
Q I+ K + +++H H ++RAM++ +G + + + + D L + +
Sbjct: 550 QHAIREKTEIMVDHFHTQVINHGKIGGQARAMVITNGIGQAIQYFYAFKDYLRER---KS 606
Query: 675 QFDSIAAFSPFIQEGKSMVESDPMINGKYAPYGTDKNRGIIKALNDDKQFNIRLLIVADK 734
+ +I AFS G V ++ +NG + TDK + +D R LIVADK
Sbjct: 607 PYQAIVAFSGEYDYGGQKV-TEATLNGFPSSQITDK-------IEEDPY---RFLIVADK 655
Query: 735 LQTGFDEPSLSIMYVDKKLKGANAVQTLSRLSRISKDKEATAIIDFVNTEKDMDFIFNLY 794
QTG+D+P L MYVDK L G AVQTLSRL+R K T ++DF N + F+ Y
Sbjct: 656 YQTGYDQPLLHTMYVDKALSGIKAVQTLSRLNRAHPQKYDTFVLDFYNDSGTIQSSFDPY 715
Query: 795 KHSTSLRDLQDTQTL 809
+T L + D L
Sbjct: 716 YRTTILSNETDPNKL 730
>gi|52549654|gb|AAU83503.1| type I site-specific
restriction-modification system R subunit and related
helicases [uncultured archaeon GZfos29E12]
Length = 889
Score = 94.4 bits (233), Expect = 2e-17
Identities = 70/214 (32%), Positives = 110/214 (50%), Gaps = 29/214 (13%)
Query: 604 DDDQYEDETIQ---------DQMLIKTKAQFIINHLLYTKNKHDNKLF-KSRAMLVCSGR 653
DD +Y+++ + + I K ++NH + N NK+ K++AM+V R
Sbjct: 430 DDPEYDEKKAKRLLRTFVEKHPVAIARKTDIMLNHFM---NSTINKINGKAKAMVVTRSR 486
Query: 654 KGLLIYKKYLDQLISQ--LPIEEQFDSIAAFSPFIQEGKSMVESDPMINGKYAPYGTDKN 711
++YKK D+LI + PI+ ++ AF+ +V+ D + +
Sbjct: 487 LHAVLYKKAFDKLIKENNYPIK----TLVAFT-------GVVKHDEQEYTENSRNDLPSQ 535
Query: 712 RGIIKALNDDKQFNIRLLIVADKLQTGFDEPSLSIMYVDKKLKGANAVQTLSRLSRISKD 771
+ I KA +D+ ++LIVA+K QTGFD+P L MYVDK L G AVQTL RL+RI +
Sbjct: 536 KSIRKAFEEDQY---KILIVANKFQTGFDQPLLHTMYVDKMLNGITAVQTLCRLNRIHTN 592
Query: 772 KEATAIIDFVNTEKDMDFIFNLYKHSTSLRDLQD 805
K+ T I+DF N + + F Y +T L + D
Sbjct: 593 KKDTLILDFANKTEVIQKAFQPYYETTFLEEATD 626
Score = 90.5 bits (223), Expect = 3e-16
Identities = 77/294 (26%), Positives = 121/294 (40%), Gaps = 80/294 (27%)
Query: 267 KDFKPRTHQWDTIVSVLKDLISPQHMKSFKSENRYNYLIQHAAGSGKSLTIACLVYFLY- 325
K PR HQ D +L D ++ NYLI+H+ GSGK+ TIA L + L
Sbjct: 173 KPIFPRYHQLDCANLLLAD-----------AKPGKNYLIEHSNGSGKTKTIAWLAHGLIN 221
Query: 326 KLEINNKHKFDTIVIMNDRSQLDAQLGDVVIKFLTSNGITNFC-RPKSSKQLQNEILSGK 384
K + + +D +++++DR +D QL + G + K+S L+ + +G
Sbjct: 222 KFDSLDNRVYDMVIVVSDRRVIDTQLQNQAKSIEKVKGTVEVIDKKKTSDDLRKALETGS 281
Query: 385 NRVVITTMQKFSQLLPNKSXXXXXXXXXXXXXXXXXXXXYANSXXXXXXXNNEDDNQFSF 444
N +V+TT+QKF +L +
Sbjct: 282 N-IVVTTLQKFPYIL---------------------------------------EEVKDL 301
Query: 445 KSNSVAIISDEAHRSHGKSTTEKLHEFLSGNT--------------------------RQ 478
A+I DEAH S + K+ + LS N+ R
Sbjct: 302 PKRKYAVIIDEAHSSQTGTMARKMKQVLSTNSLEEAEALDIEEMDEVDEELLREIESYRN 361
Query: 479 SSKITYFSFTCTPTTQCLEMFGIASK-GDKIPFYTYSMHNALEDKLILDVIKQF 531
I++F+FT TP + LEMFG+ + G PF+TY+M A+E+ I DV+K +
Sbjct: 362 LKNISFFAFTATPKNKTLEMFGMLDEYGHYYPFHTYTMKQAIEEGFIFDVLKNY 415
>gi|53690938|ref|ZP_00346524.1| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Desulfovibrio desulfuricans G20]
Length = 810
Score = 94.4 bits (233), Expect = 2e-17
Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 80/297 (26%)
Query: 266 FKDFKPRTHQWDTIVSVLKDLISPQHMKSFKSENRYNYLIQHAAGSGKSLTIACLVYFLY 325
+K PR HQ + +L + + +S YLIQH+AGSGKS +IA L + L
Sbjct: 269 YKQIFPRYHQLKVVRMLLAN--------AAESGIGRRYLIQHSAGSGKSNSIAWLAHQLV 320
Query: 326 KLEINNKHKFDTIVIMNDRSQLDAQLGDVVIKFLTSNGITNFCRPKSSKQLQNEILSGKN 385
LE +K FD+++++ DR LD Q+ D + +F + + S L+ + +GK
Sbjct: 321 GLEHESKALFDSVIVVTDRRVLDKQIRDTIKQFAQVSATVG--HAEHSGDLRKFLKAGK- 377
Query: 386 RVVITTMQKFSQLLPNKSXXXXXXXXXXXXXXXXXXXXYANSXXXXXXXNNEDDNQFSFK 445
+++ITT+QKF +L D+ +
Sbjct: 378 KIIITTVQKFPFIL--------------------------------------DEIGDEHR 399
Query: 446 SNSVAIISDEAHRSHGKSTT-------------------------EKLHEFLSGNTRQSS 480
+ AII DEAH S G TT +K+++ + G + +
Sbjct: 400 KSKFAIIIDEAHSSQGGKTTAAMNRVLEETAPYGGSDDEEEETVEDKINKIMEGR-KMVT 458
Query: 481 KITYFSFTCTPTTQCLEMFGIASKG-----DKIPFYTYSMHNALEDKLILDVIKQFS 532
+YF+FT TP + LE+FG PF++Y+M A+++ ILDV+K ++
Sbjct: 459 NASYFAFTATPKNKTLEIFGEPDPQPDGTVKHHPFHSYTMKQAIQEGFILDVLKNYT 515
>gi|48839712|ref|ZP_00296642.1| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Methanosarcina barkeri str.
fusaro]
Length = 965
Score = 94.0 bits (232), Expect = 2e-17
Identities = 75/268 (27%), Positives = 119/268 (43%), Gaps = 22/268 (8%)
Query: 271 PRTHQWDTIVSVLKDLISPQHMKSFKSENRYNYLIQHAAGSGKSLTIACLVYFLYKL-EI 329
PR HQ ++ K+L++ H K + YNYLIQH+AGSGKS TIA L L L +
Sbjct: 246 PRYHQLYSV----KNLVT--HAKYHGTG--YNYLIQHSAGSGKSNTIAWLCLQLCGLHDT 297
Query: 330 NNKHKFDTIVIMNDRSQLDAQLGDVVIKFLTSNGITNFCRPKSSKQLQNEILSGKNRVVI 389
NK FD+I+++ DR LD QL + + +F G + +K L + GK+ ++I
Sbjct: 298 ENKRVFDSIIVVTDRRVLDRQLQETITQFEHVKGTVATIKKDKAKSLTAALQEGKD-III 356
Query: 390 TTMQKFSQLLPNKSXXXXXXXXXXXXXXXXXXXXYANSXXXXXXXNNEDDNQFSFKSNSV 449
T+Q F + D + S +
Sbjct: 357 CTLQTFP-----------FAVNAISEMSGKHFAVVVDEAHSSQSGEGADSVKKILGSADL 405
Query: 450 AIISDEAHRSHGKSTTEKLHEFLSGNTRQSSKITYFSFTCTPTTQCLEMFGIAS-KGDKI 508
E + + E + + +++F+FT TP T+ LE+FG G
Sbjct: 406 ESDEQEEEPEDDEDLVNQRVEAELKHKGRLPNVSFFAFTATPKTKTLELFGTQQPDGSYE 465
Query: 509 PFYTYSMHNALEDKLILDVIKQFSTLRL 536
PF Y+M A+E+K ILDV++ ++T ++
Sbjct: 466 PFSLYTMKQAIEEKFILDVLENYTTFKV 493
Score = 92.8 bits (229), Expect = 5e-17
Identities = 63/168 (37%), Positives = 91/168 (53%), Gaps = 13/168 (7%)
Query: 643 KSRAMLVCSGRKGLLIYKKYLDQLISQLPIEEQFDSIAAFSPFIQEGKSMVE-SDPMING 701
+++AMLV R + YK D+ I E F ++ AFS +Q+G++ E ++ ++NG
Sbjct: 549 QAKAMLVTKSRASAVKYKLAFDRYIKTH--EYPFKALVAFSGTVQDGETGREFTEAIMNG 606
Query: 702 KYAPYGTDKNRGIIKALNDDKQFNIRLLIVADKLQTGFDEPSLSIMYVDKKLKGANAVQT 761
+ + + K + R+LIVA+K QTGFD+P L MYVDK+L G NAVQT
Sbjct: 607 ----FSESQTAEVFK------REEYRILIVANKFQTGFDQPLLYAMYVDKRLGGVNAVQT 656
Query: 762 LSRLSRISKDKEATAIIDFVNTEKDMDFIFNLYKHSTSLRDLQDTQTL 809
LSRL+R DKE T ++DF N + F Y T L + D L
Sbjct: 657 LSRLNRKYPDKEDTMVLDFENEADLIQRSFQPYYEKTLLTEATDPNKL 704
>gi|9948809|gb|AAG06120.1| hypothetical protein PA2732 [Pseudomonas
aeruginosa PAO1]
pir||C83304 hypothetical protein PA2732 [imported] - Pseudomonas aeruginosa
(strain PAO1)
ref|NP_251422.1| hypothetical protein PA2732 [Pseudomonas aeruginosa PAO1]
Length = 1146
Score = 93.6 bits (231), Expect = 3e-17
Identities = 86/308 (27%), Positives = 136/308 (43%), Gaps = 84/308 (27%)
Query: 261 RVQNSFKDFKPRTHQWDTIVSVLKDLISPQHMKSFKSENRYNYLIQHAAGSGKSLTIACL 320
R + K PR HQ T+ ++L+ S K YLIQH+AGSGKS TIA L
Sbjct: 287 RKKKKRKPVFPRFHQLRTVRALLRRTRSDGVGK--------RYLIQHSAGSGKSNTIAWL 338
Query: 321 VYFLYKLEI---NNKHKFDTIVIMNDRSQLDAQLGDVVIKFLTSNGITNFCRPKSSKQLQ 377
+ L +L +FD+I+++ DR LD Q+ + + + + F ++++L+
Sbjct: 339 AHQLVELRSVADPLMPQFDSIIVITDRRALDTQIARTIKGY--DHVASIFGHSDNAQELR 396
Query: 378 NEILSGKNRVVITTMQKFSQLLPNKSXXXXXXXXXXXXXXXXXXXXYANSXXXXXXXNNE 437
+ + G+ ++++TT+QKF +L E
Sbjct: 397 DYLRRGR-KIIVTTVQKFPFIL-------------------------------------E 418
Query: 438 DDNQFSFKSNSVAIISDEAHRSHGKSTTEKLHEFLSGNT--------------------- 476
+ S + A++ DEAH S G TT ++HE LSG T
Sbjct: 419 EIGDLS--GRTFALLIDEAHSSQGGKTTARMHEALSGKTDEEAFEEDATQDAVNTEIEKR 476
Query: 477 ----RQSSKITYFSFTCTPTTQCLEMFGIAS-KGDKIPF-----YTYSMHNALEDKLILD 526
R S +YF+FT TP + LE+FG + DK+ F TY+ A+++ ILD
Sbjct: 477 IQSRRMLSNASYFAFTATPKNRTLELFGEKTVVDDKVEFRSPEELTYTTKQAIQEGFILD 536
Query: 527 VIKQFSTL 534
VI ++TL
Sbjct: 537 VIAHYTTL 544
Score = 83.2 bits (204), Expect = 4e-14
Identities = 62/181 (34%), Positives = 92/181 (50%), Gaps = 15/181 (8%)
Query: 619 IKTKAQFIINHLLYTKNKHDNKLFKSRAMLVCSGRKGLLIYKKYLDQLISQLPIEEQFDS 678
I+ KA+ +++H + K+RAM+VC+G + Y + + + Q I+ + +
Sbjct: 580 IRRKAEIMVDHFVAQVMGAKKIGGKARAMIVCNGIARAIDYWREVSDYLEQ--IKSPYKA 637
Query: 679 IAAFS-PFIQEGKSMVESDPMINGKYAPYGTDKNRGIIKALNDDKQFNIRLLIVADKLQT 737
I A+S F G+ E+D +N + D+ R Q R LIVA+K T
Sbjct: 638 IVAYSGEFEIGGEKKTEAD--LNDFPSKEIPDRLR----------QDPYRFLIVANKFVT 685
Query: 738 GFDEPSLSIMYVDKKLKGANAVQTLSRLSRISKDKEATAIIDFVNTEKDMDFIFNLYKHS 797
GFDEP L MYVDKKL G AVQTLSRL+R K T ++DF + + + F Y +
Sbjct: 686 GFDEPLLHTMYVDKKLAGVQAVQTLSRLNRAHPQKHDTFVLDFADNAEAVKKAFQDYYRA 745
Query: 798 T 798
T
Sbjct: 746 T 746
>gi|48868351|ref|ZP_00321696.1| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Haemophilus influenzae 86-028NP]
Length = 646
Score = 93.2 bits (230), Expect = 4e-17
Identities = 90/312 (28%), Positives = 132/312 (41%), Gaps = 88/312 (28%)
Query: 261 RVQNSFKD-------FKPRTHQWDTIVSVLKDLISPQHMKSFKSENRYNYLIQHAAGSGK 313
R+ S KD F PR HQ D + ++ D+ K YLIQH+AGSGK
Sbjct: 248 RLDGSTKDPLDKRTLFFPRYHQLDVVRRLIADVSEHGVGK--------RYLIQHSAGSGK 299
Query: 314 SLTIACLVYFLYKLEINNKHK----------FDTIVIMNDRSQLDAQLGDVVIKFLTSNG 363
S +I L Y L + N+ FD+++++ DR LD QL D + F +
Sbjct: 300 SNSITWLAYQLIEAYPRNEKAANGREADRPIFDSVIVVTDRRLLDKQLRDNIKDF---SE 356
Query: 364 ITNFCRPK-SSKQLQNEILSGKNRVVITTMQKFSQLLPNKSXXXXXXXXXXXXXXXXXXX 422
+ N P SS +L+ + GK +++ITT+QKF ++ +
Sbjct: 357 VKNIVAPALSSAELRQSLEQGK-KIIITTIQKFPFIVDGIA------------------- 396
Query: 423 XYANSXXXXXXXNNEDDNQFSFKSNSVAIISDEAHRSHGKSTTEKLHEFLSG-------- 474
+ D QF A+I DEAH S S + ++ +
Sbjct: 397 -------------DLGDKQF-------AVIIDEAHSSQSGSAHDNMNRAIGKTEDLDAED 436
Query: 475 ------NTRQSSKI----TYFSFTCTPTTQCLEMFGIASKGDKI-PFYTYSMHNALEDKL 523
T QS K+ +YF+FT TP LE FG K PF+ YSM A+E+
Sbjct: 437 VQDLILQTMQSRKMHGNASYFAFTATPKNSTLEKFGEKQADGKFKPFHLYSMKQAIEEGF 496
Query: 524 ILDVIKQFSTLR 535
ILDVI ++T +
Sbjct: 497 ILDVIANYTTYK 508
>gi|9656287|gb|AAF94914.1| type I restriction enzyme HsdR, putative
[Vibrio cholerae O1 biovar eltor str. N16961]
ref|NP_231400.1| type I restriction enzyme HsdR, putative [Vibrio cholerae O1 biovar
eltor str. N16961]
pir||E82160 probable type I restriction enzyme HsdR VC1765 [imported] - Vibrio
cholerae (strain N16961 serogroup O1)
Length = 1022
Score = 92.4 bits (228), Expect = 7e-17
Identities = 83/293 (28%), Positives = 124/293 (41%), Gaps = 77/293 (26%)
Query: 269 FKPRTHQWDTIVSVLKDLISPQHMKSFKSENRYNYLIQHAAGSGKSLTIACLVYFLYKL- 327
F PR HQ D +V L D S + YLIQH+AGSGKS +I Y L +
Sbjct: 290 FFPRYHQMD-VVRRLVDHCSVNGVGQ-------TYLIQHSAGSGKSNSITWAAYQLIETY 341
Query: 328 ---------EINNKHKFDTIVIMNDRSQLDAQLGDVVIKFLTSNGITNFCRPK-SSKQLQ 377
FD+++++ DR LD QL D + +F + + N P S +L+
Sbjct: 342 PISDDLPGSRGKEMPLFDSVIVVTDRRLLDKQLRDNIKEF---SEVKNIVAPAFKSSELK 398
Query: 378 NEILSGKNRVVITTMQKFSQLLPNKSXXXXXXXXXXXXXXXXXXXXYANSXXXXXXXNNE 437
+ + +GK +++ITT+QKF ++
Sbjct: 399 SALENGK-KIIITTIQKFPYIV-------------------------------------- 419
Query: 438 DDNQFSFKSNSVAIISDEAHRSHGKSTTEKLHEFL--------------SGNTRQSSKIT 483
D A+I DEAH S +KL+E + + N + S +
Sbjct: 420 -DGIADLSDRRFAVIIDEAHSSQDGHNQDKLNEAMGFVSEDVLDKALQSAKNRKMRSNAS 478
Query: 484 YFSFTCTPTTQCLEMFGIA-SKGDKIPFYTYSMHNALEDKLILDVIKQFSTLR 535
YF+FT TP LE FG + G +PF+ YSM A+E+ ILDVI ++T +
Sbjct: 479 YFAFTATPKNTTLEKFGQRQADGTYVPFHLYSMKQAIEEGFILDVIANYTTYK 531
Score = 71.2 bits (173), Expect = 2e-10
Identities = 63/208 (30%), Positives = 95/208 (45%), Gaps = 20/208 (9%)
Query: 616 QMLIKTKAQFIINHLLYTKNKHDNKLFKSRAMLVCSGRKGLLIYKKYLDQLISQLPIEEQ 675
Q I TKA+ ++ H + K + M+V + + Y + L + ++++
Sbjct: 563 QETIDTKAEIMLEHFIKHVVNGKKLKGKGKGMVVTQNIESAIRYYRALTRQLNKMG--NP 620
Query: 676 FDSIAAFSPFIQ-EGKSMVESDPMINGKYAPYGTDKNRGIIKALNDDKQFNI-------- 726
F AFS + +G E+D ING P G K+ + + I
Sbjct: 621 FKVAIAFSGSKEVDGIEYTEAD--ING--FPEGDTKDYFDVNYKRKEPDSPIPKHVDQDA 676
Query: 727 -RLLIVADKLQTGFDEPSLSIMYVDKKLKGANAVQTLSRLSR----ISKDKEATAIIDFV 781
RLL+VA+K TGFD+P L MYVDKKL VQ LSRL+R K E ++DF
Sbjct: 677 YRLLVVANKYLTGFDQPKLCAMYVDKKLASVLCVQALSRLNRSAPKYGKKTEDLFVLDFF 736
Query: 782 NTEKDMDFIFNLYKHSTSLRDLQDTQTL 809
N+ D+ F+ + ST+L + D L
Sbjct: 737 NSVDDIKTAFDPFYTSTTLSEATDVNVL 764
>gi|41690596|ref|ZP_00147128.1| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Psychrobacter sp. 273-4]
Length = 1102
Score = 92.0 bits (227), Expect = 9e-17
Identities = 79/307 (25%), Positives = 129/307 (41%), Gaps = 85/307 (27%)
Query: 271 PRTHQWDTIVSVLKDLISPQHMKSFKSENRYNYLIQHAAGSGKSLTIACLVYFLYKLEIN 330
PR HQWD + ++ ++ + YLIQH+AGSGKS +IA + L L +
Sbjct: 316 PRYHQWDVVTKLVNAAVTEGAGQK--------YLIQHSAGSGKSNSIAWTAHQLSTLYND 367
Query: 331 NKHK-FDTIVIMNDRSQLDAQLGDVVIKFLTSNGITNFCRPK----SSKQLQNEILSGKN 385
K F +++++ DR+ LD QL + + +F ++G+ K S + E L
Sbjct: 368 QGDKQFHSVIVITDRTILDDQLQETIYQFEHADGVVGKINRKEGDGSKSEKLAEALVNSQ 427
Query: 386 RVVITTMQKFSQLLPNKSXXXXXXXXXXXXXXXXXXXXYANSXXXXXXXNNEDDNQFSFK 445
++I T+Q F +L ++ K
Sbjct: 428 PIIIVTIQTFPFVL------------------------------------KAIEDSSVLK 451
Query: 446 SNSVAIISDEAHRSHGKSTTEKLHEFL-----SGNT-----------------------R 477
S AII+DEAH S ST +L E L NT R
Sbjct: 452 SRRYAIIADEAHSSQTGSTARQLKEVLVSGDIESNTDDDKPLSSEDSLDFILDATLAARR 511
Query: 478 QSSKITYFSFTCTPTTQCLEMFG------IASKGDKIP--FYTYSMHNALEDKLILDVIK 529
S ++Y++FT TP + +E+FG + + D +P ++ YSM A+E+ ILDV+K
Sbjct: 512 SSPNLSYYAFTATPKPKTIELFGRLPNPDLPASKDNLPAAYHVYSMRQAIEEGFILDVLK 571
Query: 530 QFSTLRL 536
++ ++
Sbjct: 572 NYTNYKV 578
Score = 92.0 bits (227), Expect = 9e-17
Identities = 72/236 (30%), Positives = 114/236 (47%), Gaps = 22/236 (9%)
Query: 619 IKTKAQFIINHLLYTKNKHDNKLFKSRAMLVCSGRKGLLIYKKYLDQLISQLPIEEQFDS 678
I K + II H + N +++AM+V RK + YK D I+ ++
Sbjct: 613 IAQKVKIIIEH--FNDNIKGLLGGQAKAMVVTGSRKEAVRYKIAFDNYIADYGYRN-INA 669
Query: 679 IAAFSPFIQEGKSMVESDPMINGKYAPYGTD---KNRGIIKALNDDKQFNIRLLIVADKL 735
+ AFS + + +S +I K+ + + K R + KA + D + ++++VA+K
Sbjct: 670 MVAFSGEVTFNDNDPDSGALIGEKFTEHNMNIGLKGRDLRKAFDSD---DYQVMLVANKF 726
Query: 736 QTGFDEPSLSIMYVDKKLKGANAVQTLSRLSRISKDK--EATAIIDFVNTEKDMDFIFNL 793
QTGFD+P L MYVDKKL G + VQTLSRL+R K K T ++DF N +D+ F
Sbjct: 727 QTGFDQPKLCAMYVDKKLTGVDCVQTLSRLNRTYKGKAESGTFVLDFFNDPEDILEAFQP 786
Query: 794 YKHSTSLRDLQDTQ---TLISSLIMAG--------RSIQKVFEKEKRAGLITPFCK 838
Y + L D+ D L L ++G + ++ + K K I+ CK
Sbjct: 787 YYETAHLADVSDPDQVFDLYEKLRVSGIFTKNEVEQFVEAFYSKNKSNAAISNICK 842
>gi|52007207|ref|ZP_00334585.1| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Thiobacillus denitrificans ATCC
25259]
Length = 1009
Score = 92.0 bits (227), Expect = 9e-17
Identities = 70/262 (26%), Positives = 112/262 (42%), Gaps = 58/262 (22%)
Query: 301 YNYLIQHAAGSGKSLTIACLVYFLYKLEINNKHK-FDTIVIMNDRSQLDAQLGDVVIKFL 359
+NYL++H+AGSGKS TI L + L L + HK FD+++++ DR LD QL D + +F
Sbjct: 300 HNYLVEHSAGSGKSNTIGWLAHRLASLHNESDHKVFDSVIVITDRRVLDRQLQDTIYQFE 359
Query: 360 TSNGITNFCRPKSSKQLQNEILSGKNRVVITTMQKFSQLLPNKSXXXXXXXXXXXXXXXX 419
G+ + S+QL E L+ ++I+T+QKF
Sbjct: 360 HRQGVVQKI-DEDSRQLA-EALTNSVPIIISTLQKFP----------------------- 394
Query: 420 XXXXYANSXXXXXXXNNEDDNQFSFKSNSVAIISDEAHRSHGKSTTEKLHEFLSGNT--- 476
+ + + A+I DEAH S T L E L G+
Sbjct: 395 ----FVARQLARMAEERREGADGILPTRRCAVIIDEAHSSQSGETATDLKEVLGGHVLRE 450
Query: 477 ------------------------RQSSKITYFSFTCTPTTQCLEMFGIASKGDK-IPFY 511
+ + +++F+FT TP + L +FG G PF+
Sbjct: 451 EAARYAVDEGVDNLDELYRSMAKRGRQTNLSFFAFTATPKHKTLAVFGRDEAGKAGQPFH 510
Query: 512 TYSMHNALEDKLILDVIKQFST 533
Y+M A+E+ I+DV+K ++T
Sbjct: 511 RYTMSQAIEEGFIMDVLKNYTT 532
Score = 78.6 bits (192), Expect = 1e-12
Identities = 59/190 (31%), Positives = 92/190 (48%), Gaps = 16/190 (8%)
Query: 619 IKTKAQFIINHL-LYTKNKHDNKLFKSRAMLVCSGRKGLLIYKKYLDQLISQLPIEEQFD 677
I K + ++ H T++K K ++AM+V R + YK D I E+ +
Sbjct: 569 IAQKTEVMVEHFNAVTRHKVGGK---AKAMVVTGSRLEAVRYKLAFDAYIR----EKGYS 621
Query: 678 SIAAFSPFIQEGKSMVESDPMINGKYAPYGTDKN--RGIIKALNDDKQFNIRLLIVADKL 735
I F E V D + + G + G++ D ++ + L+VA+K
Sbjct: 622 WIKTLVAFSGE----VVDDELPGKTWTEVGMNGGIKEGVLPEKFDSSEYQV--LLVAEKY 675
Query: 736 QTGFDEPSLSIMYVDKKLKGANAVQTLSRLSRISKDKEATAIIDFVNTEKDMDFIFNLYK 795
QTG+D+P L MYVDK+L G AVQTLSRL+R+ KE T ++DFVN +++ F Y
Sbjct: 676 QTGYDQPLLHTMYVDKRLAGIQAVQTLSRLNRMHPLKEDTFVLDFVNDRQEIKEAFKQYH 735
Query: 796 HSTSLRDLQD 805
+ + D
Sbjct: 736 EGAEMGEEAD 745
>gi|21109200|gb|AAM37743.1| type I restriction-modification system
endonuclease [Xanthomonas axonopodis pv. citri str. 306]
ref|NP_643207.1| type I restriction-modification system endonuclease [Xanthomonas
axonopodis pv. citri str. 306]
Length = 1084
Score = 91.7 bits (226), Expect = 1e-16
Identities = 60/199 (30%), Positives = 97/199 (48%), Gaps = 16/199 (8%)
Query: 619 IKTKAQFIINHLLYTKNKHDNKLFKSRAMLVCSGRKGLLIYKKYLDQLISQLPIEEQFDS 678
+ K +FI+ H + N ++AM+V S R + YKK D I P + + +
Sbjct: 578 VTQKVEFIVEH--FAANVAPLLGGTAKAMIVTSSRAAAVRYKKAFDAYIRANPQHKPYQA 635
Query: 679 IAAFSPFIQEGKSMVESDPMINGKYAPYGTDKNRGIIKALNDDKQFN-----------IR 727
+ AFS + + M SD + K P+ + ++ + +Q+ R
Sbjct: 636 LVAFSGSLTGNEVMHASDEQL--KNDPFAAQDDEQFTESTMNPRQYGTDLRKVFDRPEFR 693
Query: 728 LLIVADKLQTGFDEPSLSIMYVDKKLKG-ANAVQTLSRLSRISKDKEATAIIDFVNTEKD 786
++IVA+K QTGFD+P L MY+DKK+ VQTLSRL+R + K+ T ++DFVN +
Sbjct: 694 VMIVANKFQTGFDQPKLCAMYLDKKIANPVEIVQTLSRLNRTAPGKDTTFVVDFVNDPQS 753
Query: 787 MDFIFNLYKHSTSLRDLQD 805
+ F +Y + QD
Sbjct: 754 ILDAFAMYDAGAKIEKAQD 772
Score = 70.9 bits (172), Expect = 2e-10
Identities = 72/280 (25%), Positives = 116/280 (40%), Gaps = 48/280 (17%)
Query: 271 PRTHQWDTIVSVLKDLISPQHMKSFKSENRYNYLIQHAAGSGKSLTIACLVYFLYKLEIN 330
PR HQW + ++ D + +S YL +H+AGSGK+ TIA + L +L +
Sbjct: 289 PRFHQWKAVTRMIDDAKAKGPGQS--------YLCEHSAGSGKTSTIAWTAHDLIRLRTD 340
Query: 331 -NKHKFDTIVIMNDRSQLDAQLGDVVIKFLTSNGITNFCRPK-----SSKQLQNEILSGK 384
+ F +++++ DR+ LD QL V + + K SK+L E L
Sbjct: 341 AGVNLFHSVIVVTDRTVLDKQLQYAVQQIDHQKDLIAAIGEKDSGVSKSKELA-EALERG 399
Query: 385 NRVVITTMQKF----SQLLPNKSXXXXXXXXXXXXXXXXXXXXYANSXXXXXXXNNEDDN 440
+++ T+Q F Q+L N N +
Sbjct: 400 TPIIVVTIQTFPYAMEQILTNGKLAD------------------RNFAVIIDEAHTSQTG 441
Query: 441 QFSFKSNSVAIISDEAHRSHGKSTTEKLHEFLSGNTRQSSKITYFSFTCTPTTQCLEMFG 500
+ K + + D A G + E L + S R ++ ++YF+FT TP L +FG
Sbjct: 442 TAASKLQATLALRD-AKAMEGLTVEELLEKIQSSRVRPNN-VSYFAFTATPKHATLTLFG 499
Query: 501 I-------ASKGDKIP--FYTYSMHNALEDKLILDVIKQF 531
ASK D +P F Y M A+E+ ILDV++ +
Sbjct: 500 TRPDPGKPASKEDNLPVSFDKYPMRQAIEEGFILDVLQGY 539
>gi|23473873|ref|ZP_00129168.1| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Desulfovibrio desulfuricans G20]
Length = 1085
Score = 91.7 bits (226), Expect = 1e-16
Identities = 68/201 (33%), Positives = 103/201 (50%), Gaps = 20/201 (9%)
Query: 619 IKTKAQFIINHLLYTKNKHDNKLFKSRAMLVCSGRKGLLIYKKYLDQLISQLPIEEQFDS 678
+ K QFI+ H +TKN K++AM+V S R + YKK D+ I Q S
Sbjct: 584 VTQKVQFIVEH--FTKNVAHRLDGKAKAMVVTSSRAAAIRYKKAFDRYIEQHSEYGFIHS 641
Query: 679 IAAFSPFIQEGKSMVESDPMINGKYAP--YGTDKNRGIIK-ALNDD----------KQFN 725
+ AFS + GK ++ D +G++ + D+N + ++N D +
Sbjct: 642 LVAFSGKMT-GKQVMHQD---DGEFKDDVFIVDENEEFTEQSMNPDIHGQDLRFAFDRPE 697
Query: 726 IRLLIVADKLQTGFDEPSLSIMYVDKKLKG-ANAVQTLSRLSRISKDKEATAIIDFVNTE 784
R+++VADK QTGFD+P L MYVDKK+ VQT SRL+R + K+ IIDFVN
Sbjct: 698 YRVMLVADKFQTGFDQPKLVAMYVDKKIANHVEIVQTFSRLNRTAPGKDEVFIIDFVNDP 757
Query: 785 KDMDFIFNLYKHSTSLRDLQD 805
+++ F Y + ++QD
Sbjct: 758 ENVRQAFTTYDKGAHIDEVQD 778
Score = 87.4 bits (215), Expect = 2e-15
Identities = 88/295 (29%), Positives = 124/295 (41%), Gaps = 79/295 (26%)
Query: 271 PRTHQWDTIVSVLKDLISPQHMKSFKSENRYNYLIQHAAGSGKSLTIACLVYFLYKL-EI 329
PR HQW + +L D + ++ YL H+AGSGK+ TI+ + L KL E
Sbjct: 296 PRFHQWTAVNQILAD--------ARQNGAGMTYLCDHSAGSGKTSTISWTAHDLVKLRED 347
Query: 330 NNKHKFDTIVIMNDRSQLDAQLGDVVIKFLTSNG-ITNFCRPKS----SKQLQNEILSGK 384
N F++++I+ DR+ LD QL D V + G I R KS SKQL +LSG
Sbjct: 348 NGDAVFNSVIIVTDRNVLDGQLQDAVKQIDHQFGVIAAIDRQKSSKSKSKQLSEALLSG- 406
Query: 385 NRVVITTMQKFSQLLPNKSXXXXXXXXXXXXXXXXXXXXYANSXXXXXXXNNEDDNQFSF 444
+V+ T+Q F YA +
Sbjct: 407 TPIVVVTIQTFP---------------------------YAMEAIITDK---------AL 430
Query: 445 KSNSVAIISDEAHRSHGKSTTEKLHEFL--SGNTRQSS------------------KITY 484
K + A+I DEAH S +T KL L SG + S+ I+Y
Sbjct: 431 KGKNFAVIIDEAHNSQTGATAAKLQAALGMSGQGKMSTMTVDELLEQLQKSRARPKNISY 490
Query: 485 FSFTCTPTTQCLEMFG------IASKGDKIP--FYTYSMHNALEDKLILDVIKQF 531
F+FT TP L +FG + D P F+ Y+M A+E+K ILDV+K +
Sbjct: 491 FAFTGTPKHSTLMLFGRPTDPSQPASDDNPPQAFHLYTMRQAIEEKFILDVLKGY 545
>gi|53756220|gb|AAU90511.1| type I restriction-modification system,
R subunit, putative [Methylococcus capsulatus str. Bath]
ref|YP_112808.1| type I restriction-modification system, R subunit, putative
[Methylococcus capsulatus str. Bath]
Length = 1002
Score = 91.3 bits (225), Expect = 2e-16
Identities = 79/304 (25%), Positives = 132/304 (42%), Gaps = 82/304 (26%)
Query: 261 RVQNSFKDFKPRTHQWDTIVSVLKDLISPQHMKSFKSENRYNYLIQHAAGSGKSLTIACL 320
R + + K PR HQ T+ ++L+ +S YLIQH+AGSGKS TIA L
Sbjct: 266 RKRKTRKQIFPRYHQLRTVRALLR--------RSQADGVGKRYLIQHSAGSGKSNTIAWL 317
Query: 321 VYFLYKLEI---NNKHKFDTIVIMNDRSQLDAQLGDVVIKFLTSNGITNFCRPKSSKQLQ 377
+ L +L+ + +FD+++++ DR LD Q+ + + + + + +S+++L+
Sbjct: 318 AHQLVELKTAADAGQAQFDSVIVITDRRALDTQIARTIRSY--DHVASIYGHSESAEELR 375
Query: 378 NEILSGKNRVVITTMQKFSQLLPNKSXXXXXXXXXXXXXXXXXXXXYANSXXXXXXXNNE 437
+ GK ++++TT+QKF +L
Sbjct: 376 TFLRRGK-KIIVTTVQKFPFIL-------------------------------------- 396
Query: 438 DDNQFSFKSNSVAIISDEAHRSHGKSTTEKLHEFLSGNTRQS------------------ 479
D A++ DEAH S G TT K+H LSG +
Sbjct: 397 -DELGDLGDKKFALLIDEAHSSQGGKTTAKMHLALSGQAAEGGEDEEEESVEDKVNALIE 455
Query: 480 -----SKITYFSFTCTPTTQCLEMFGIAS-KGDKIPF-----YTYSMHNALEDKLILDVI 528
+ +Y++FT TP T+ LE+FG GD + F TY+ A+++ ILDVI
Sbjct: 456 SRKMLANASYYAFTATPKTKTLELFGERQVVGDTVQFRSPEELTYTTKQAIQEGFILDVI 515
Query: 529 KQFS 532
++
Sbjct: 516 ANYT 519
Score = 79.7 bits (195), Expect = 5e-13
Identities = 58/180 (32%), Positives = 92/180 (50%), Gaps = 13/180 (7%)
Query: 619 IKTKAQFIINHLLYTKNKHDNKLFKSRAMLVCSGRKGLLIYKKYLDQLISQLPIEEQFDS 678
I+ KA+ +++H + K+RAM+VC+G + Y + + + + I+ + +
Sbjct: 557 IRRKAEIMVDHFIEQVIGAKKIGGKARAMIVCNGIARAIDYFREVSDYLRE--IKSPYKA 614
Query: 679 IAAFSPFIQEGKSMVESDPMINGKYAPYGTDKNRGIIKALNDDKQFNIRLLIVADKLQTG 738
I A+S + G + +++ +NG ++ I L D R LIVA+K TG
Sbjct: 615 IVAYSGDFEVG-GVKKTEADLNGF-------PSKDIPAKLRQDPY---RFLIVANKFVTG 663
Query: 739 FDEPSLSIMYVDKKLKGANAVQTLSRLSRISKDKEATAIIDFVNTEKDMDFIFNLYKHST 798
FDEP L MYVDK L G AVQTLSRL+R K T ++DF + + + F Y +T
Sbjct: 664 FDEPLLHTMYVDKPLAGVLAVQTLSRLNRAHPQKADTFVLDFADNAEAVKAAFQEYYRAT 723
>gi|34762431|ref|ZP_00143431.1| TYPE I RESTRICTION-MODIFICATION
SYSTEM RESTRICTION SUBUNIT [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
gb|EAA24967.1| TYPE I RESTRICTION-MODIFICATION SYSTEM RESTRICTION SUBUNIT
[Fusobacterium nucleatum subsp. vincentii ATCC 49256]
Length = 980
Score = 91.3 bits (225), Expect = 2e-16
Identities = 75/275 (27%), Positives = 121/275 (43%), Gaps = 53/275 (19%)
Query: 271 PRTHQWDTIVSVLKDLISPQHMKSFKSENRYNYLIQHAAGSGKSLTIACLVYFLYKL--- 327
PR HQ+ + +++D++ K+ NYLIQH+AGSGKS +I L Y L ++
Sbjct: 281 PRYHQYRVVTKLVEDVM--------KNGVGKNYLIQHSAGSGKSNSITWLAYRLVEVARK 332
Query: 328 ----EINNKHK-FDTIVIMNDRSQLDAQLGDVVIKFLTSNGITNFCRPKSSKQLQNEILS 382
+I+ K F++++++ DR LD Q+ D + KF+ + SS L+N +L
Sbjct: 333 VQNGDISKFEKIFNSVIVVTDRLNLDKQIDDNIRKFIDVRSVVG--HASSSTDLKN-LLV 389
Query: 383 GKNRVVITTMQKFSQLLPN-----KSXXXXXXXXXXXXXXXXXXXXYANSXXXXXXXNNE 437
+ +++I T+QKF LL K N N
Sbjct: 390 NEKKIIIATIQKFPYLLEKIGTELKGKNFAIIIDEAHSSQSGRAAASLNMAVSATIDIN- 448
Query: 438 DDNQFSFKSNSVAIISDEAHRSHGKSTTEKLHEFLSGNTRQSSKITYFSFTCTPTTQCLE 497
DDN F + +KL+E + + ++F+FT TP + L+
Sbjct: 449 DDNDFEIE--------------------DKLNELIEAR-KMPENASFFAFTATPKAKTLQ 487
Query: 498 MFGIASKGDKIPFYTYSMHNALEDKLILDVIKQFS 532
MFG F YSM A+E+ ILDV+K ++
Sbjct: 488 MFGNV-------FDLYSMKQAIEEGFILDVLKNYT 515
Score = 85.1 bits (209), Expect = 1e-14
Identities = 69/221 (31%), Positives = 110/221 (49%), Gaps = 19/221 (8%)
Query: 619 IKTKAQFIINHLLYTKNKHDNKLFKSRAMLVCSGRKGLLIYKKYLDQLISQLPIEEQFDS 678
I+ KA+ ++ H L+ N +++AM+V + Y ++ ++ + +++
Sbjct: 553 IREKAEVMVEHFLH--NTATKIAGQAKAMVVTQSILSAIEYYHCINDMLKKS--NTGYEA 608
Query: 679 IAAFSPFIQ-EGKSMVESDPMINGKYAPYGTDKNRGIIKALNDDKQFNIRLLIVADKLQT 737
+ AFS + GK++ E+ +NG T K K+ + LIVADK QT
Sbjct: 609 LIAFSGEKEYNGKTVTEAS--LNGFPDTETTTKF----------KETKYKFLIVADKYQT 656
Query: 738 GFDEPSLSIMYVDKKLKGANAVQTLSRLSRISKDKEATAIIDFVNTEKDMDFIFNLYKHS 797
G+DEP L MYVDK L AVQTLSRL+R +K+K T IIDF N + + F Y
Sbjct: 657 GYDEPLLHTMYVDKVLNDVKAVQTLSRLNRCTKNKIDTCIIDFANKPEHIQEAFQPYYKE 716
Query: 798 TSLRDLQDTQTLISSLIMAGRSIQKVFEKEKRAGLITPFCK 838
T L D L + +++ + V+EK++ L+ F K
Sbjct: 717 TKLDGEVDPNKLFN--LLSVLDSKYVYEKDEVDELVELFLK 755
>gi|52857360|ref|ZP_00341546.1| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Xylella fastidiosa Ann-1]
Length = 1027
Score = 90.5 bits (223), Expect = 3e-16
Identities = 78/304 (25%), Positives = 123/304 (39%), Gaps = 88/304 (28%)
Query: 267 KDFKPRTHQWDTIVSVLKDLISPQHMKSFKSENRYNYLIQHAAGSGKSLTIACLVYFLYK 326
K PR HQ T+ + L+ H YLIQH+AGSGKS TIA L + L +
Sbjct: 290 KQIFPRFHQLRTV----RALLGRAHSDGVGGR----YLIQHSAGSGKSNTIAWLAHQLVE 341
Query: 327 LEINN---KHKFDTIVIMNDRSQLDAQLGDVVIKFLTSNGITNFCRPKSSKQLQNEILSG 383
L + +FD+I+++ DR LD Q+ D + + + + + Q E L
Sbjct: 342 LRRKDDPMTPQFDSIIVITDRRALDTQIADTIKGY---DHVAAIFGHSDNAQELREYLRR 398
Query: 384 KNRVVITTMQKFSQLLPNKSXXXXXXXXXXXXXXXXXXXXYANSXXXXXXXNNEDDNQFS 443
++++TT+QKF +L D
Sbjct: 399 DKKIIVTTVQKFPFIL---------------------------------------DELGD 419
Query: 444 FKSNSVAIISDEAHRSHGKSTTEKLHEFLSGNTRQS------------------------ 479
A++ DEAH S G T ++HE L G +
Sbjct: 420 LSGKRFALLIDEAHSSQGGKITARMHETLGGKVAEEEFEEEFEEDRTQDAVNAEIERRIA 479
Query: 480 -----SKITYFSFTCTPTTQCLEMFGIAS-KGDKIPF-----YTYSMHNALEDKLILDVI 528
+ +YF+FT TP + LE+FG + GDK+ F TY+ A+++K ILDV+
Sbjct: 480 SRKLLANASYFAFTATPKNKTLELFGEKTLVGDKVQFRSPEELTYTTKQAIQEKFILDVV 539
Query: 529 KQFS 532
++++
Sbjct: 540 EKYT 543
Score = 81.3 bits (199), Expect = 2e-13
Identities = 61/181 (33%), Positives = 93/181 (50%), Gaps = 15/181 (8%)
Query: 619 IKTKAQFIINHLLYTKNKHDNKLFKSRAMLVCSGRKGLLIYKKYLDQLISQLPIEEQFDS 678
I+ KA+ +++H + ++RAM+VC+G + Y + + ++Q I+ + +
Sbjct: 581 IRRKAEIMVDHFIAEVVGKQKIGGQARAMIVCNGIARAIDYWREVSDYLTQ--IKSPYRA 638
Query: 679 IAAFS-PFIQEGKSMVESDPMINGKYAPYGTDKNRGIIKALNDDKQFNIRLLIVADKLQT 737
I A+S F G+ E+D +NG ++ I L D R LIVA+K T
Sbjct: 639 IVAYSGSFEIGGQKKTEAD--LNGF-------PSKDIPDTLKKDPY---RFLIVANKFVT 686
Query: 738 GFDEPSLSIMYVDKKLKGANAVQTLSRLSRISKDKEATAIIDFVNTEKDMDFIFNLYKHS 797
GFDEP L MYVDK L G AVQTLSRL+R K T ++DF + + + F Y +
Sbjct: 687 GFDEPLLHTMYVDKPLAGVLAVQTLSRLNRAHPQKRDTFVLDFADNAEAVKAAFQDYYRA 746
Query: 798 T 798
T
Sbjct: 747 T 747
>gi|28199930|ref|NP_780244.1| type I restriction-modification system
endonuclease [Xylella fastidiosa Temecula1]
gb|AAO29893.1| type I restriction-modification system endonuclease [Xylella
fastidiosa Temecula1]
Length = 1031
Score = 90.1 bits (222), Expect = 3e-16
Identities = 79/308 (25%), Positives = 124/308 (39%), Gaps = 92/308 (29%)
Query: 267 KDFKPRTHQWDTIVSVLKDLISPQHMKSFKSENRYNYLIQHAAGSGKSLTIACLVYFLYK 326
K PR HQ T+ + L+ H YLIQH+AGSGKS TIA L + L +
Sbjct: 290 KQIFPRFHQLCTV----RALLGRAHSDGVGGR----YLIQHSAGSGKSNTIAWLAHQLVE 341
Query: 327 LEINN---KHKFDTIVIMNDRSQLDAQLGDVVIKFLTSNGITNFCRPKSSKQLQNEILSG 383
L + +FD+I+++ DR LD Q+ D + + + + + Q E L G
Sbjct: 342 LRRKDDPMTPQFDSIIVITDRRALDTQIADTIKGY---DHVAAIFGHSDNAQELCEYLRG 398
Query: 384 KNRVVITTMQKFSQLLPNKSXXXXXXXXXXXXXXXXXXXXYANSXXXXXXXNNEDDNQFS 443
++++TT+QKF +L D
Sbjct: 399 GKKIIVTTVQKFPFIL---------------------------------------DQLGD 419
Query: 444 FKSNSVAIISDEAHRSHGKSTTEKLHEFLSGNTRQS------------------------ 479
A++ DEAH S G T ++HE L G +
Sbjct: 420 LSGKRFALLIDEAHSSQGGKITARMHETLGGKVAEEEFEEEFEEEFEEDRTQDAVNAEIE 479
Query: 480 ---------SKITYFSFTCTPTTQCLEMFGIAS-KGDKIPF-----YTYSMHNALEDKLI 524
+ +YF+FT TP + LE+FG + GDK+ F TY+ A+++K I
Sbjct: 480 RRIASRKLLANASYFAFTATPKNKTLELFGEKTLVGDKVQFRSPEELTYTTKQAIQEKFI 539
Query: 525 LDVIKQFS 532
LDV+++++
Sbjct: 540 LDVVEKYT 547
Score = 81.3 bits (199), Expect = 2e-13
Identities = 61/181 (33%), Positives = 93/181 (50%), Gaps = 15/181 (8%)
Query: 619 IKTKAQFIINHLLYTKNKHDNKLFKSRAMLVCSGRKGLLIYKKYLDQLISQLPIEEQFDS 678
I+ KA+ +++H + ++RAM+VC+G + Y + + ++Q I+ + +
Sbjct: 585 IRRKAEIMVDHFIAEVVGKQKIGGQARAMIVCNGIARAIDYWREVSDYLTQ--IKSPYRA 642
Query: 679 IAAFS-PFIQEGKSMVESDPMINGKYAPYGTDKNRGIIKALNDDKQFNIRLLIVADKLQT 737
I A+S F G+ E+D +NG ++ I L D R LIVA+K T
Sbjct: 643 IVAYSGSFEIGGQKKTEAD--LNGF-------PSKDIPDTLKKDPY---RFLIVANKFVT 690
Query: 738 GFDEPSLSIMYVDKKLKGANAVQTLSRLSRISKDKEATAIIDFVNTEKDMDFIFNLYKHS 797
GFDEP L MYVDK L G AVQTLSRL+R K T ++DF + + + F Y +
Sbjct: 691 GFDEPLLHTMYVDKPLAGVLAVQTLSRLNRAHPQKRDTFVLDFADNAEAVKAAFQDYYRA 750
Query: 798 T 798
T
Sbjct: 751 T 751
>gi|42632163|ref|ZP_00157701.1| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Haemophilus influenzae R2866]
Length = 1006
Score = 90.1 bits (222), Expect = 3e-16
Identities = 91/313 (29%), Positives = 135/313 (43%), Gaps = 90/313 (28%)
Query: 261 RVQNSFKD-------FKPRTHQWDTIVSVLKDLISPQHMKSFKSENRYNYLIQHAAGSGK 313
R+ S KD F PR HQ + + ++ D +S Q + YLIQH+AGSGK
Sbjct: 273 RLDGSTKDPLEKRSLFFPRYHQLEVVRRLIAD-VSEQGVGK-------RYLIQHSAGSGK 324
Query: 314 SLTIACLVYFLYKLEINNKHK----------FDTIVIMNDRSQLDAQLGDVVIKFLTSNG 363
S +I L Y L + N+ FD+++++ DR LD QL D + F +
Sbjct: 325 SNSITWLAYQLIEAYPCNEKAANGREADRPIFDSVIVVTDRRLLDKQLRDNIKDF---SE 381
Query: 364 ITNFCRPK-SSKQLQNEILSGKNRVVITTMQKFSQLLPNKSXXXXXXXXXXXXXXXXXXX 422
+ N P SS +L+ + GK +++ITT+QKF ++ +
Sbjct: 382 VKNIVAPALSSAELRQSLEQGK-KIIITTIQKFPFIVDGIA------------------- 421
Query: 423 XYANSXXXXXXXNNEDDNQFSFKSNSVAIISDEAHRSHGKSTTEKLHEFLSGNTR----- 477
+ D QF A+I DEAH S S + ++ + G T
Sbjct: 422 -------------DLGDKQF-------AVIIDEAHSSQSGSAHDNMNRAI-GKTEDLDAE 460
Query: 478 ----------QSSKI----TYFSFTCTPTTQCLEMFGIASKGDKI-PFYTYSMHNALEDK 522
QS K+ +YF+FT TP LE FG K PF+ YSM A+E+
Sbjct: 461 DVQDLILQAMQSRKMRGNASYFAFTATPKNSTLEKFGEKQADGKFKPFHLYSMKQAIEEG 520
Query: 523 LILDVIKQFSTLR 535
ILDVI ++T +
Sbjct: 521 FILDVIANYTTYK 533
Score = 75.9 bits (185), Expect = 7e-12
Identities = 64/201 (31%), Positives = 98/201 (47%), Gaps = 19/201 (9%)
Query: 614 QDQMLIKTKAQFIINHLLYTKNKHDNKLFKSRAMLVCSGRKGLLIYKKYLDQLISQLPIE 673
+ Q I TKA+ +++H + K++ M+V + + Y + L +L++
Sbjct: 563 RSQQTIDTKAEIMLDHFIRQIFNRKKLKGKAKGMVVTQNIETAIRYFQALKRLLAGRG-- 620
Query: 674 EQFDSIAAFSPF-IQEGKSMVESDPMINGKYAPYGTDKNRGIIKALNDDKQFNIRLLIVA 732
F AFS + +G E++ +NG +A T K D ++ RLL+VA
Sbjct: 621 NPFKIAIAFSGSKVVDGVEYTEAE--MNG-FAESET-------KEYFDQDEY--RLLVVA 668
Query: 733 DKLQTGFDEPSLSIMYVDKKLKGANAVQTLSRLSR----ISKDKEATAIIDFVNTEKDMD 788
+K TGFD+P L MYVDKKL G VQ LSRL+R + K E ++DF N+ +D+
Sbjct: 669 NKYLTGFDQPKLCAMYVDKKLSGVLCVQALSRLNRSANKLGKRTEDLFVLDFFNSVEDIQ 728
Query: 789 FIFNLYKHSTSLRDLQDTQTL 809
F + STSL D L
Sbjct: 729 QAFEPFYTSTSLSQATDVNVL 749
>gi|42629287|ref|ZP_00154835.1| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Haemophilus influenzae R2846]
Length = 1007
Score = 90.1 bits (222), Expect = 3e-16
Identities = 91/313 (29%), Positives = 135/313 (43%), Gaps = 90/313 (28%)
Query: 261 RVQNSFKD-------FKPRTHQWDTIVSVLKDLISPQHMKSFKSENRYNYLIQHAAGSGK 313
R+ S KD F PR HQ + + ++ D +S Q + YLIQH+AGSGK
Sbjct: 274 RLDGSTKDPLEKRSLFFPRYHQLEVVRRLIAD-VSEQGVGK-------RYLIQHSAGSGK 325
Query: 314 SLTIACLVYFLYKLEINNKHK----------FDTIVIMNDRSQLDAQLGDVVIKFLTSNG 363
S +I L Y L + N+ FD+++++ DR LD QL D + F +
Sbjct: 326 SNSITWLAYQLIEAYPCNEKAANGREADRPIFDSVIVVTDRRLLDKQLRDNIKDF---SE 382
Query: 364 ITNFCRPK-SSKQLQNEILSGKNRVVITTMQKFSQLLPNKSXXXXXXXXXXXXXXXXXXX 422
+ N P SS +L+ + GK +++ITT+QKF ++ +
Sbjct: 383 VKNIVAPALSSAELRQSLEQGK-KIIITTIQKFPFIVDGIA------------------- 422
Query: 423 XYANSXXXXXXXNNEDDNQFSFKSNSVAIISDEAHRSHGKSTTEKLHEFLSGNTR----- 477
+ D QF A+I DEAH S S + ++ + G T
Sbjct: 423 -------------DLGDKQF-------AVIIDEAHSSQSGSAHDNMNRAI-GKTEDLDAE 461
Query: 478 ----------QSSKI----TYFSFTCTPTTQCLEMFGIASKGDKI-PFYTYSMHNALEDK 522
QS K+ +YF+FT TP LE FG K PF+ YSM A+E+
Sbjct: 462 DVQDLILQAMQSRKMRGNASYFAFTATPKNSTLEKFGEKQADGKFKPFHLYSMKQAIEEG 521
Query: 523 LILDVIKQFSTLR 535
ILDVI ++T +
Sbjct: 522 FILDVIANYTTYK 534
Score = 77.0 bits (188), Expect = 3e-12
Identities = 65/201 (32%), Positives = 98/201 (48%), Gaps = 19/201 (9%)
Query: 614 QDQMLIKTKAQFIINHLLYTKNKHDNKLFKSRAMLVCSGRKGLLIYKKYLDQLISQLPIE 673
+ Q I TKA+ +++H + K++ M+V + + Y + L L++
Sbjct: 564 RSQQTIDTKAEIMLDHFIRQIFSRKKLKGKAKGMVVTQNIETAIRYFQALKHLLAGRG-- 621
Query: 674 EQFDSIAAFSPF-IQEGKSMVESDPMINGKYAPYGTDKNRGIIKALNDDKQFNIRLLIVA 732
F AFS + +G E++ +NG +A T K D ++ RLL+VA
Sbjct: 622 NPFKIAIAFSGSKVVDGVEYTEAE--MNG-FAESET-------KEYFDQDEY--RLLVVA 669
Query: 733 DKLQTGFDEPSLSIMYVDKKLKGANAVQTLSRLSR----ISKDKEATAIIDFVNTEKDMD 788
+K TGFD+P L MYVDKKL G VQ LSRL+R +SK E ++DF N+ +D+
Sbjct: 670 NKYLTGFDQPKLCAMYVDKKLSGVLCVQALSRLNRSANKLSKRTEDLFVLDFFNSVEDIQ 729
Query: 789 FIFNLYKHSTSLRDLQDTQTL 809
F + STSL D L
Sbjct: 730 QAFEPFYTSTSLSQATDVNVL 750
>gi|2411488|gb|AAB70710.1| HsdR [Klebsiella pneumoniae]
pir||T30329 hsdR protein - Klebsiella pneumoniae
Length = 1102
Score = 90.1 bits (222), Expect = 3e-16
Identities = 121/532 (22%), Positives = 201/532 (37%), Gaps = 133/532 (25%)
Query: 308 AAGSGKSLTIACLVYFLYKLEINNKHKFDTIVIMNDRSQLDAQLGDVVIKFLTSNGITNF 367
A G GKS T+ L L K + + TIV++ DR+ LD QL + G
Sbjct: 327 ATGCGKSYTMQFLTRLLMK---KRRVRSPTIVLITDRTDLDDQLSAQMCNAKNYIGDDTV 383
Query: 368 CRPKSSKQLQNEILSGKNR--VVITTMQKFSQLLPNKSXXXXXXXXXXXXXXXXXXXXYA 425
P +S+ E L+G+N V +TT+ KF+
Sbjct: 384 V-PVTSRDDLREKLAGRNSGGVFLTTIHKFT----------------------------- 413
Query: 426 NSXXXXXXXNNEDDNQFSFKSNSVAIISDEAHRSHGKSTTEKLHEFLSGNTRQS------ 479
ED S +SN + I SDEAHRS + + + SG R++
Sbjct: 414 -----------EDTELLSGRSNIICI-SDEAHRSQVNLDQKVIVDKESGRVRKTYGFAKY 461
Query: 480 -----SKITYFSFTCTPTTQCLEMFGIASKGDKIPFYTYSMHNALEDKLILDVIKQ---- 530
+ TY FT TP +E+FG +Y+M +++D++ + ++ +
Sbjct: 462 LYDSLPQATYVGFTGTPIDATMEVFGNIVD-------SYTMTESVQDEITVRIVYEGRAA 514
Query: 531 ---FSTLRLNEVNVDSFXXXXXXXXXXXXXXXXXXXXXXXXYNEEAXXXXXXXXXXXXXX 587
T +L EV Y EE
Sbjct: 515 KVILDTRKLEEVE---------------------------KYYEECANAGTNEWQIDESK 547
Query: 588 XXXXXXXXCFLNGIDFDDDQYEDETIQDQMLIKTKAQFIINHLLYTKNKHDNKLFKSRAM 647
+N I DDD+ E A+ H Y K ++ K +AM
Sbjct: 548 KASAT-----MNAILGDDDRLE-----------ALAEDFAKH--YEKRVNEGSTVKGKAM 589
Query: 648 LVCSGRK-GLLIYKKYLDQLISQLPIEEQFDSIAAFSPFIQEGKSMVESDP----MINGK 702
VC+ R+ Y++ D + +++ D + QE K + S+ M GK
Sbjct: 590 FVCASREIDWDFYRQLKDFRPEWVEVKQAPDDVELTE---QEEKELPPSEMVKMVMTRGK 646
Query: 703 ------YAPYGTDKNRGIIKALNDDKQFNIRLLIVADKLQTGFDEPSLSIMYVDKKLKGA 756
Y G+ + R + + + N ++ IV D TGFD P L +Y+DK L+
Sbjct: 647 DDHAKLYELLGSKEYRKELDKQFKNAKSNFKIAIVVDMWLTGFDVPELDTIYIDKPLQKH 706
Query: 757 NAVQTLSRLSRISKDKEATAIIDFVNTEKDMDFIFNLYKH--STSLRDLQDT 806
N +QT+SR++R + K ++D++ ++ M+ +Y +T+ D+Q +
Sbjct: 707 NLIQTISRVNRKLEGKSKGLVVDYIGIKRQMNQALAMYSRIDATNFEDIQQS 758
>gi|56750492|ref|YP_171193.1| hypothetical protein syc0483_c
[Synechococcus elongatus PCC 6301]
dbj|BAD78673.1| hypothetical protein [Synechococcus elongatus PCC 6301]
ref|ZP_00164194.1| COG0610: Type I site-specific restriction-modification system, R
(restriction) subunit and related helicases
[Synechococcus elongatus PCC 7942]
Length = 1039
Score = 89.7 bits (221), Expect = 5e-16
Identities = 71/272 (26%), Positives = 117/272 (42%), Gaps = 74/272 (27%)
Query: 301 YNYLIQHAAGSGKSLTIACLVYFLYKL-EINNKHKFDTIVIMNDRSQLDAQLGDVVIKFL 359
+ YL+QH+AGSGK+ +IA +F +L + +N+ FD++++++DR+ +D QL + + F
Sbjct: 305 HKYLVQHSAGSGKTNSIAWTAHFFSELHDADNRKVFDSVIVVSDRNVIDTQLQEAIESFE 364
Query: 360 TSNG----ITNFCRPKSSKQLQNEILSGKNRVVITTMQKFSQLLPNKSXXXXXXXXXXXX 415
G IT KSSK E L G ++V+ T+Q F L
Sbjct: 365 RHKGVVAAITRDDGSKSSKLA--EALKGDKKIVVCTIQTFPFALQAVRELAAT------- 415
Query: 416 XXXXXXXXYANSXXXXXXXNNEDDNQFSFKSNSVAIISDEAHRSHGKSTTEKLHEFLS-- 473
+ A+I+DEAH S KL + LS
Sbjct: 416 -----------------------------EGKRFAVIADEAHSSQTGEAASKLKQLLSPA 446
Query: 474 ---------------------GNTRQSSKITYFSFTCTPTTQCLEMFGIASKGDK----- 507
+ + S ITY +FT TP + LE+FG ++
Sbjct: 447 ELADLNDGGEVDLEAVLAAQMSDRARESGITYVAFTATPKAKTLELFGRRPDPNRPAGPD 506
Query: 508 ---IPFYTYSMHNALEDKLILDVIKQFSTLRL 536
+PF+ YSM A+E+ ILDV++ +++ ++
Sbjct: 507 NLPMPFHVYSMRQAIEEGFILDVLQNYTSYKV 538
Score = 79.7 bits (195), Expect = 5e-13
Identities = 55/172 (31%), Positives = 89/172 (50%), Gaps = 16/172 (9%)
Query: 643 KSRAMLVCSGRKGLLIYKKYLDQLISQLPIEEQFDSIAAFSPFIQEGKS----MVESDPM 698
K++AM+V RK + +K +D+ I+ + + ++ AFS +++ S E+ P
Sbjct: 596 KAKAMVVVGSRKEAVRWKLAIDRYIAAK--QYRLGTLVAFSGEVRDRDSGPDPFTETSPN 653
Query: 699 INGKYAPYGTDKNRGIIKALNDDKQFNIRLLIVADKLQTGFDEPSLSIMYVDKKLKGANA 758
+N +G I+ ++ I LIVA+K QTGFD+P L MY+D++L G A
Sbjct: 654 LNPNL--------QGDIRETFKSDRYQI--LIVANKFQTGFDQPLLCGMYIDRRLAGIQA 703
Query: 759 VQTLSRLSRISKDKEATAIIDFVNTEKDMDFIFNLYKHSTSLRDLQDTQTLI 810
VQTLSRL+R K+ T I+DF N ++ F Y + L D ++
Sbjct: 704 VQTLSRLNRCHPGKDTTYIVDFSNDPAEILAAFKTYYTTAELASATDPNLIL 755
>gi|52426226|ref|YP_089363.1| HsdR protein [Mannheimia
succiniciproducens MBEL55E]
gb|AAU38778.1| HsdR protein [Mannheimia succiniciproducens MBEL55E]
Length = 1020
Score = 89.7 bits (221), Expect = 5e-16
Identities = 65/197 (32%), Positives = 103/197 (51%), Gaps = 21/197 (10%)
Query: 618 LIKTKAQFIINHLLYTKNKHDNKLFKSRAMLVCSGRKGLLIYKKYLDQLISQLPIEEQFD 677
+I K + I+ H T +++AM+V +GR+ + YK D+ I +
Sbjct: 572 VIAQKVEIIVEHFRTTTMHKIGG--RAKAMVVTNGREHAVRYKLAFDEYIKEKGYTG-IK 628
Query: 678 SIAAFSPFI--QEGKSMVESDPMINGKYAPYGTDKNRGIIKALNDDKQF---NIRLLIVA 732
S+ AFS I +E ++ ++NG I+ ++ +QF + ++L+VA
Sbjct: 629 SLVAFSGGITLKEAPEKEYTEALMNG-------------IREVDLPEQFASEHYQVLLVA 675
Query: 733 DKLQTGFDEPSLSIMYVDKKLKGANAVQTLSRLSRISKDKEATAIIDFVNTEKDMDFIFN 792
+K QTGFD+P L M+VDKKL G AVQTLSRL+R +K K T ++DFVN +D+ F
Sbjct: 676 EKYQTGFDQPLLHTMFVDKKLSGIQAVQTLSRLNRCAKGKTDTFVLDFVNQPEDIYKAFK 735
Query: 793 LYKHSTSLRDLQDTQTL 809
+ T L D+ + L
Sbjct: 736 PFYEVTELGDIPSNEKL 752
Score = 88.6 bits (218), Expect = 1e-15
Identities = 74/270 (27%), Positives = 124/270 (45%), Gaps = 17/270 (6%)
Query: 271 PRTHQWDTIVSVLKDLISPQHMKSFKSENRYNYLIQHAAGSGKSLTIACLVYFLYKLEIN 330
PR HQ D + + LI+ H + + NYLIQH+AGSGKS TIA L + L L
Sbjct: 277 PRFHQLDAV----RQLIA--HSREHGAGR--NYLIQHSAGSGKSNTIAWLAHQLSSLHNR 328
Query: 331 NKHK-FDTIVIMNDRSQLDAQLGDVVIKFLTSNGITNFCRPKSSKQLQNEILSGKNRVVI 389
+ K F++++++ DR LD QL + +F +G+ +S+QL I S ++I
Sbjct: 329 DDQKIFNSVIVVTDRVVLDRQLQATISQFEHKDGVVQKIE-HNSQQLAVAIASD-TPIII 386
Query: 390 TTMQKFSQLLP-----NKSXXXXXXXXXXXXXXXXXXXXYANSXXXXXXXNNEDDNQFSF 444
TT+QKF ++ +S +++ + N+
Sbjct: 387 TTIQKFPFVMAALARKQESGINVAISTEGKQFAVIVDEAHSSQSGEAAMELRKVLNKDGI 446
Query: 445 KSNSVAIISDEAHRSHGKSTTEKLHEFLSGNTRQSS-KITYFSFTCTPTTQCLEMFGIAS 503
++ +A D+ G S K F+ RQ +++F+FT TP + +F
Sbjct: 447 EAAVMAEFLDDDDDETGLSDEAKKQLFIEAAKRQRQPNLSFFAFTATPKWKTKALFDEPG 506
Query: 504 KGDKIPFYTYSMHNALEDKLILDVIKQFST 533
PF+ Y+M A+E+ ILDV++ ++T
Sbjct: 507 ADGNTPFHHYTMKQAIEEGFILDVLENYAT 536
>gi|51598164|ref|YP_072355.1| possible type I restriction enzyme
(restriction subunit) [Yersinia pseudotuberculosis IP
32953]
emb|CAH23117.1| possible type I restriction enzyme (restriction subunit) [Yersinia
pseudotuberculosis IP 32953]
Length = 1092
Score = 89.4 bits (220), Expect = 6e-16
Identities = 123/513 (23%), Positives = 198/513 (37%), Gaps = 121/513 (23%)
Query: 299 NRYNYLIQHAAGSGKSLTIACLVYFLYKLEINNKHKFDTIVIMNDRSQLDAQLGDVVIKF 358
+R +I H GSGKSLT +V+ L ++ K I+++ DR L+ QL I
Sbjct: 339 SRNGGVIWHTTGSGKSLT---MVFLSKALILSETLKQCRIIVVTDRVDLENQLSRTFI-- 393
Query: 359 LTSNGITNFCRPK------SSKQLQNEILSGKNRVVITTMQKFSQLLPNKSXXXXXXXXX 412
S G R K S ++L +I G R++ + +QKF
Sbjct: 394 --STGELAGKRDKADAIATSGRRLAEQIGRGTERILFSLIQKF----------------- 434
Query: 413 XXXXXXXXXXXYANSXXXXXXXNNEDDNQFSFKSNSVAIISDEAHRSHGKSTTEKLHEFL 472
N+ N S+ + ++ DE HRSHG + +++ L
Sbjct: 435 -------------NTATRLPECVNT--------SSDIIVLIDEGHRSHGGESHQRMKLAL 473
Query: 473 SGNTRQSSKITYFSFTCTPTTQCLEMFGIASKGDKIPFYTYSMHNALEDKLILDVIKQFS 532
+ +FT TP L+ +K I + Y+M A+EDK + ++ +
Sbjct: 474 PN-------AAFVAFTGTPL---LKDDKTTNKFGPI-VHAYTMQRAVEDKTVTPLLYEE- 521
Query: 533 TLRLNEVNVDSFXXXXXXXXXXXXXXXXXXXXXXXXYNEEAXXXXXXXXXXXXXXXXXXX 592
R E+NV NE A
Sbjct: 522 --RPPELNV----------------------------NERAIDSWFDRITEGLTDKQKAD 551
Query: 593 XXXCFLNGIDFDDDQYEDETIQDQMLIKTKAQFIINHLLYTKNKHDNKLFKSRAMLVCSG 652
F N + + I A I NH + KN D + L C
Sbjct: 552 LKRKFAN---------KGQVYNADDRIHLIALDIANH--FVKNIDDGL----KGQLACDS 596
Query: 653 RKGLLIYKKYLDQLISQLPIEEQFDS-IAAFSPFIQEGKSMVESD--PMINGKYAP-YGT 708
+ + YKKYLD+ F+S + SP +EG + V+ P + + G+
Sbjct: 597 KAAAIKYKKYLDEA-------GLFESAVVISSPDTREGNTEVDESGIPDVTKWWQDNVGS 649
Query: 709 DKNRGIIKALND--DKQFNIRLLIVADKLQTGFDEPSLSIMYVDKKLKGANAVQTLSRLS 766
+ + + D DK +++LLIV DKL TGFDEP +++Y+DK LKG N +Q ++R++
Sbjct: 650 QDEQVYTRNVIDRFDKDDSLKLLIVVDKLLTGFDEPKNAVLYIDKPLKGHNLIQAIARVN 709
Query: 767 RISKDKEATAIIDFVNTEKDMDFIFNLYKHSTS 799
R+ K+ +ID+ K++D Y+ S
Sbjct: 710 RLHPKKKFGLLIDYRGILKELDTTIEDYQKLAS 742
>gi|48243623|gb|AAT40773.1| putative type I site-specific
restriction-modification enzyme HsdR [Haemophilus
influenzae]
Length = 567
Score = 88.2 bits (217), Expect = 1e-15
Identities = 78/263 (29%), Positives = 115/263 (43%), Gaps = 73/263 (27%)
Query: 303 YLIQHAAGSGKSLTIACLVYFLYKLEINNKHK----------FDTIVIMNDRSQLDAQLG 352
YLIQH+AGSGKS +I L Y L + N+ FD+++++ DR LD QL
Sbjct: 5 YLIQHSAGSGKSNSITWLAYQLIEAYPRNEKAANGREADRPIFDSVIVVTDRRLLDKQLR 64
Query: 353 DVVIKFLTSNGITNFCRPK-SSKQLQNEILSGKNRVVITTMQKFSQLLPNKSXXXXXXXX 411
D + F + + N P SS +L+ + GK +++ITT+QKF ++ +
Sbjct: 65 DNIKDF---SEVKNIVAPALSSAELRQSLEQGK-KIIITTIQKFPFIVDGIA-------- 112
Query: 412 XXXXXXXXXXXXYANSXXXXXXXNNEDDNQFSFKSNSVAIISDEAHRSHGKSTTEKLHEF 471
+ D QF A+I DEAH S S + ++
Sbjct: 113 ------------------------DLGDKQF-------AVIIDEAHSSQSGSAHDNMNRA 141
Query: 472 LSG--------------NTRQSSKI----TYFSFTCTPTTQCLEMFGIASKGDKI-PFYT 512
+ T QS K+ +YF+FT TP LE FG K PF+
Sbjct: 142 IGKTEDLDAEDVQDLILQTMQSRKMHGNASYFAFTATPKNSTLEKFGEKQADGKFKPFHL 201
Query: 513 YSMHNALEDKLILDVIKQFSTLR 535
YSM A+E+ ILDVI ++T +
Sbjct: 202 YSMKQAIEEGFILDVIANYTTYK 224
Score = 80.9 bits (198), Expect = 2e-13
Identities = 66/201 (32%), Positives = 99/201 (48%), Gaps = 19/201 (9%)
Query: 614 QDQMLIKTKAQFIINHLLYTKNKHDNKLFKSRAMLVCSGRKGLLIYKKYLDQLISQLPIE 673
+ Q I TKA+ +++H +Y K++ M+V + + Y + L L++
Sbjct: 254 RSQQTIDTKAEIMLDHFIYQVFNRKKLKGKAKGMVVTQNIETAIRYFQALKHLLAGRG-- 311
Query: 674 EQFDSIAAFSPF-IQEGKSMVESDPMINGKYAPYGTDKNRGIIKALNDDKQFNIRLLIVA 732
F AFS + +G E++ +NG +A T K D ++ RLL+VA
Sbjct: 312 NPFKIAIAFSGSKVVDGVEYTEAE--MNG-FAESET-------KEYFDQDEY--RLLVVA 359
Query: 733 DKLQTGFDEPSLSIMYVDKKLKGANAVQTLSRLSR----ISKDKEATAIIDFVNTEKDMD 788
+K TGFD+P L MYVDKKL G VQ LSRL+R +SK E ++DF N+ +D+
Sbjct: 360 NKYLTGFDQPKLCAMYVDKKLSGVLCVQALSRLNRSANKLSKRTEDLFVLDFFNSVEDIQ 419
Query: 789 FIFNLYKHSTSLRDLQDTQTL 809
F + STSL D L
Sbjct: 420 QAFEPFYTSTSLSQATDVNVL 440
>gi|23491885|dbj|BAC16860.1| conserved hypothetical protein
[Corynebacterium efficiens YS-314]
ref|NP_736660.1| hypothetical protein CE0050 [Corynebacterium efficiens YS-314]
Length = 1064
Score = 88.2 bits (217), Expect = 1e-15
Identities = 80/300 (26%), Positives = 124/300 (40%), Gaps = 78/300 (26%)
Query: 271 PRTHQWDTI--VSVLKDLISPQHMKSFKSENRYNYLIQHAAGSGKSLTIACLVYFLYKLE 328
PR HQW + ++ + P H NYLIQH+AGSGK+ +IA + L L
Sbjct: 290 PRFHQWRAVTKIAAAAAVEGPGH----------NYLIQHSAGSGKTDSIAWTAHRLASLH 339
Query: 329 INNKHK-FDTIVIMNDRSQLDAQLGDVVIKFLTSNG----ITNFCRPKSSKQLQNEILSG 383
K FDT+ ++ DR LD QL D V + T G I + + +L + SG
Sbjct: 340 DKAGEKVFDTVFVIADRQVLDRQLQDAVQQLETVAGTFQAIDSGGDGSKTSRLTQVLTSG 399
Query: 384 KNRVVITTMQKFSQLLPNKSXXXXXXXXXXXXXXXXXXXXYANSXXXXXXXNNEDDNQFS 443
++V T+Q F L + NQ
Sbjct: 400 TAKIVGVTLQTFPHAL---------------------------------AALKDPANQDK 426
Query: 444 FKSNSVAIISDEAHRSHGKSTTEKLHEFL------------------------SGNTRQS 479
A+I+DEAH S S+ + + E L + ++
Sbjct: 427 LAGRRFAVIADEAHSSQTGSSAKAVREMLYLTREIPEFDLEEPGADQDALAAMAAHSDAD 486
Query: 480 SKITYFSFTCTPTTQCLEMFG---IASKGDKIPFYTYSMHNALEDKLILDVIKQFSTLRL 536
+++YF+FT TP + LE+FG +A++ + PF Y M A+E+ ILDV+K ++T +
Sbjct: 487 KRLSYFAFTATPKAKTLELFGRRNLATQ-ELEPFDLYPMKQAIEEGFILDVLKNYTTYEM 545
Score = 75.9 bits (185), Expect = 7e-12
Identities = 60/200 (30%), Positives = 101/200 (50%), Gaps = 14/200 (7%)
Query: 619 IKTKAQFIINHLLYTKNKHDNKLFKSRAMLVCSGRKGLLIYKKYLDQLISQ--LPIEEQF 676
+ +K I+ H T H +++AM+V + R + Y + ++ I++ LP++
Sbjct: 598 VASKVDVILEHYRSTVQPHLGG--RAKAMVVTASRAAAVRYARAFEKAITERNLPLQ--- 652
Query: 677 DSIAAFSPFIQEGK--SMVESDPMINGKYAPYGTDKNRGIIKALNDDKQFNIRLLIVADK 734
++ AFS + + S+ + + + + K R + D Q +L+VA+K
Sbjct: 653 -TLVAFSGEVPDPDVASLPGTAQKMVTEMSMNPALKGRDLASVFAQDGQ---NILVVANK 708
Query: 735 LQTGFDEPSLSIMYVDKKLKGANAVQTLSRLSRISKDKEATAIIDFVNTEKDMDFIFNLY 794
QTGFD+P L MYVDK+L G AVQTLSRL+R + K T ++DFVN + + F Y
Sbjct: 709 YQTGFDQPLLVGMYVDKQLSGIAAVQTLSRLNRRAPGKTDTYVLDFVNDAEQILESFKTY 768
Query: 795 KHSTSLRDLQDTQTLISSLI 814
+ + D L++ LI
Sbjct: 769 YEAAHIETESDPD-LVADLI 787
>gi|48853355|ref|ZP_00307528.1| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Cytophaga hutchinsonii]
Length = 1034
Score = 87.0 bits (214), Expect = 3e-15
Identities = 78/299 (26%), Positives = 128/299 (42%), Gaps = 85/299 (28%)
Query: 271 PRTHQWDTIVSVLKDLISPQHMKSFKSENRYNYLIQHAAGSGKSLTIACLVYFLYKL--E 328
PR HQ D + ++ D + K YLIQH+AGSGKS +I Y L + E
Sbjct: 299 PRYHQLDVVRKLVDD--------ASKKGVGQTYLIQHSAGSGKSNSITWAAYQLIETYPE 350
Query: 329 INN--------KHKFDTIVIMNDRSQLDAQLGDVVIKFLTSNGITNFCRPK-SSKQLQNE 379
+N FD+++++ DR LD Q+ + + +F + + N P SSK+L+
Sbjct: 351 SDNLPGSKGVSNPLFDSVIVVTDRRLLDKQIRENIKEF---SEVKNIVAPAYSSKELKES 407
Query: 380 ILSGKNRVVITTMQKFSQLLPNKSXXXXXXXXXXXXXXXXXXXXYANSXXXXXXXNNEDD 439
+ SGK +++ITT+QKF ++ D
Sbjct: 408 LESGK-KIIITTIQKFPFIV---------------------------------------D 427
Query: 440 NQFSFKSNSVAIISDEAHRSHGKSTTEKLHEFL---SGNTRQSSKI-------------- 482
A+I DEAH S ++ +++ + +G+ + +I
Sbjct: 428 GIADLSDKRFAVIIDEAHSSQSGTSAGTMNQVMGNAAGDATEDEEIDPQDKILEAMRARK 487
Query: 483 -----TYFSFTCTPTTQCLEMFGIASKGDKI-PFYTYSMHNALEDKLILDVIKQFSTLR 535
+Y +FT TP LE FG+ + K PF+ YSM A+E+ ILDV+ ++T +
Sbjct: 488 MRGNASYLAFTATPKNNTLERFGVKQEDGKYKPFHLYSMKQAIEEGFILDVLANYTTYK 546
Score = 80.1 bits (196), Expect = 4e-13
Identities = 67/208 (32%), Positives = 109/208 (52%), Gaps = 19/208 (9%)
Query: 614 QDQMLIKTKAQFIINHLLYTKNKHDNKLF-KSRAMLVCSGRKGLLIYKKYLDQLISQLPI 672
Q++ I TKA +++H + TK + +L K++AM+ + + Y L +L+ +
Sbjct: 576 QNKQTIATKADIMLDHFM-TKLVNTKRLKGKAKAMVATQSIESAINYYFALKKLLDEQG- 633
Query: 673 EEQFDSIAAFSPFIQEGKSMVESDPMINGKYAPYGTDK-------NRGIIKALNDDKQFN 725
F AFS +++ K + ++ +N A T K + I + +N D+
Sbjct: 634 -NPFKIAIAFSG-VKKIKGIEYTEDSLNDFPAHLDTAKPSDPGYISDKIARFVNMDEY-- 689
Query: 726 IRLLIVADKLQTGFDEPSLSIMYVDKKLKGANAVQTLSRLSR----ISKDKEATAIIDFV 781
R+L+VA+K TG+D+P L+ MYVDKKL+G AVQ LSRL+R + K E I+DF
Sbjct: 690 -RMLVVANKYLTGYDQPKLTAMYVDKKLQGVIAVQALSRLNRSADKLGKKTEDLFILDFY 748
Query: 782 NTEKDMDFIFNLYKHSTSLRDLQDTQTL 809
NT +D+ F+ + +TSL D L
Sbjct: 749 NTTEDIKKAFDPFYTATSLSKATDINVL 776
>gi|1679868|emb|CAA68059.1| Sty SBLI [Salmonella enterica]
Length = 1088
Score = 86.7 bits (213), Expect = 4e-15
Identities = 117/525 (22%), Positives = 203/525 (38%), Gaps = 119/525 (22%)
Query: 308 AAGSGKSLTIACLVYFLYKLEINNKHKFDTIVIMNDRSQLDAQLGDVVIKFLTSNGITNF 367
A G GKS T+ L L K + + TIV++ DR+ LD QL + G
Sbjct: 327 ATGCGKSYTMQFLTRLLMK---SVEFASPTIVLITDRTDLDDQLSAQMCNAKNYIGDDTV 383
Query: 368 CRPKSSKQLQNEILSGKNR--VVITTMQKFSQLLPNKSXXXXXXXXXXXXXXXXXXXXYA 425
P +S+ E L+G+N V +TT+ KF+
Sbjct: 384 V-PVTSRDDLREKLAGRNSGGVFLTTIHKFT----------------------------- 413
Query: 426 NSXXXXXXXNNEDDNQFSFKSNSVAIISDEAHRSHGKSTTEKLHEFLSGNTRQS------ 479
ED S +SN + I SDEAHRS + + + SG R++
Sbjct: 414 -----------EDTELLSERSNIICI-SDEAHRSQVNLDQKVIVDKESGRVRKTYGFAKY 461
Query: 480 -----SKITYFSFTCTPTTQCLEMFGIASKGDKIPFYTYSMHNALEDKLILDVIKQFSTL 534
+ TY FT TP +++FG+ +Y+M +++D++ + ++ +
Sbjct: 462 LHDSLPRATYVGFTGTPIDATMDVFGVIVD-------SYTMTESVQDEITVRIVYEG--- 511
Query: 535 RLNEVNVDSFXXXXXXXXXXXXXXXXXXXXXXXXYNEEAXXXXXXXXXXXXXXXXXXXXX 594
R +V +D+ Y EE
Sbjct: 512 RAAKVILDA-----------------GKLEEVEKYYEECANAGTNEWQIDESKKASAT-- 552
Query: 595 XCFLNGIDFDDDQYEDETIQDQMLIKTKAQFIINHLLYTKNKHDNKLFKSRAMLVCSGRK 654
+N I D+D+ +K A+ H Y K + K +AM VC+ R+
Sbjct: 553 ---MNAILGDEDR-----------LKALAEDFAKH--YEKRVAEGSTVKGKAMFVCASRE 596
Query: 655 -GLLIYKKYLDQLISQLPIEEQFDSIAAFSPFIQEGKSMVESDP----MINGK------Y 703
Y++ D + +++ + + QE K + S+ M GK Y
Sbjct: 597 IAWDFYRQLKDFRPAWFEVKQAPEGVELTG---QEEKELPPSEMVKMVMTRGKDDDAKLY 653
Query: 704 APYGTDKNRGIIKALNDDKQFNIRLLIVADKLQTGFDEPSLSIMYVDKKLKGANAVQTLS 763
G+ + R + + + N ++ IV D TGFD P L +Y+DK L+ N +QT+S
Sbjct: 654 DLLGSKEYRKELDKQFKNAKSNFKIAIVVDMWLTGFDVPELDTIYIDKPLQKHNLIQTIS 713
Query: 764 RLSRISKDKEATAIIDFVNTEKDMDFIFNLYKH--STSLRDLQDT 806
R++R + K ++D++ ++ M+ +Y +T+ D+Q +
Sbjct: 714 RVNRKMEGKSKGLVVDYIGIKRQMNQALAMYSRIDATNFEDIQQS 758
>gi|16124876|ref|NP_419440.1| hypothetical protein CC0623
[Caulobacter crescentus CB15]
gb|AAK22608.1| conserved hypothetical protein [Caulobacter crescentus CB15]
pir||D87326 conserved hypothetical protein CC0623 [imported] - Caulobacter
crescentus
Length = 964
Score = 85.9 bits (211), Expect = 7e-15
Identities = 70/263 (26%), Positives = 114/263 (42%), Gaps = 66/263 (25%)
Query: 303 YLIQHAAGSGKSLTIACLVYFLYKLEINNKHK-FDTIVIMNDRSQLDAQLGDVVIKFLTS 361
+LIQH+AGSGK+ +IA + L +L +K F ++++++DR+ +D QL + + F +
Sbjct: 301 FLIQHSAGSGKTNSIAWSAHILSELHDAADNKLFSSVIVVSDRNVIDTQLQEALFDFQRT 360
Query: 362 NGITNFCRPKS---SKQLQNEILSGKNRVVITTMQKFSQLLPNKSXXXXXXXXXXXXXXX 418
G+ + +S S QL + +GK +V++ T+Q F L
Sbjct: 361 AGVVATIKSESGSKSGQLAEALAAGK-KVIVCTIQTFPFALEAVR--------------- 404
Query: 419 XXXXXYANSXXXXXXXNNEDDNQFSFKSNSVAIISDEAHRSHGKSTTEKLHEFLS----- 473
Q + + + A+I+DEAH S KL + LS
Sbjct: 405 ---------------------EQAATQGKAFAVIADEAHSSQTGEAAGKLKQMLSDAEIA 443
Query: 474 -------------------GNTRQSSKITYFSFTCTPTTQCLEMFGIA-SKGDKIPFYTY 513
G ITY +FT TP + L++FG + G PF+ Y
Sbjct: 444 ELADGGEIDFETQLTANMAGRAASDKSITYVAFTATPKAKTLQLFGRPDADGLPAPFHVY 503
Query: 514 SMHNALEDKLILDVIKQFSTLRL 536
SM A+E+ ILDV+K ++ L
Sbjct: 504 SMRQAIEEGFILDVLKNYTPYSL 526
Score = 79.3 bits (194), Expect = 6e-13
Identities = 65/222 (29%), Positives = 105/222 (47%), Gaps = 32/222 (14%)
Query: 599 NGIDFDDDQYEDETIQDQML---------IKTKAQFIINHLLYTKNKHDNKLFKSRAMLV 649
+G ++D+ + E +T ++ I K Q ++ H Y +N K++AM+V
Sbjct: 533 DGQEWDEREVERDTALKGIMRWVRLHPYNIAQKVQIVVEH--YRENVQPLLDGKAKAMVV 590
Query: 650 CSGRKGLLIYKKYLDQLISQLPIEEQFDSIAAFSPFIQEGKSMVESD------PMINGKY 703
R+ + + ++ I ++ ++ AFS + + + S+ P +NG
Sbjct: 591 LGSRQEAVRWSVAINAYIRKMGYP--LGTLVAFSGEVNDDELGAVSETSAALNPGLNG-- 646
Query: 704 APYGTDKNRGIIKALNDDKQFNIRLLIVADKLQTGFDEPSLSIMYVDKKLKGANAVQTLS 763
R I A K N L+VA+K QTGFD+P L MYVD++L G AVQTLS
Sbjct: 647 --------RDIRDAF---KAENFHFLLVANKFQTGFDQPLLCGMYVDRRLAGIQAVQTLS 695
Query: 764 RLSRISKDKEATAIIDFVNTEKDMDFIFNLYKHSTSLRDLQD 805
RL+R K+ T I+DF N+ +D+ F Y + L D
Sbjct: 696 RLNRAHPGKDTTYILDFCNSAEDILTAFRTYYETAELEAATD 737
>gi|54308080|ref|YP_129100.1| putative type I restriction enzyme
HsdR [Photobacterium profundum SS9]
emb|CAG19298.1| putative type I restriction enzyme HsdR [Photobacterium profundum]
Length = 1016
Score = 82.0 bits (201), Expect = 9e-14
Identities = 78/296 (26%), Positives = 125/296 (41%), Gaps = 81/296 (27%)
Query: 269 FKPRTHQWDTIVSVLKDLISPQHMKSFKSENRYNYLIQHAAGSGKSLTIACLVYFLYKLE 328
F PR Q D + ++ D + K+ YLIQH+AGSGKS +I Y L +
Sbjct: 299 FFPRYQQMDVVRKLIAD--------AEKNGVGQTYLIQHSAGSGKSNSITWAAYQLIEAY 350
Query: 329 INNKHK----------FDTIVIMNDRSQLDAQLGDVVIKFLTSNGITNFCRP-KSSKQLQ 377
N+ FD+++++ DR LD QL + + +F + + N P S +L+
Sbjct: 351 PGNETAAGGKSLEQPLFDSVIVVTDRRILDKQLRENIQQF---SEVKNIIVPANKSSELK 407
Query: 378 NEILSGKNRVVITTMQKFSQLLPNKSXXXXXXXXXXXXXXXXXXXXYANSXXXXXXXNNE 437
+ + GK +++ITT+QKF ++ S +
Sbjct: 408 SALEQGK-KIIITTIQKFPFIIDGIS--------------------------------DL 434
Query: 438 DDNQFSFKSNSVAIISDEAHRSHGKSTTEKLHEFLSGNTRQSS----------------- 480
D +F A+I DEAH S S + ++ + GN + +
Sbjct: 435 SDKRF-------AVIIDEAHSSQSGSAHDNMNRAM-GNVEEEADAQDKILEAMKSRKMRG 486
Query: 481 KITYFSFTCTPTTQCLEMFGIAS-KGDKIPFYTYSMHNALEDKLILDVIKQFSTLR 535
+Y +FT TP LE FG G PF+ YSM A+E+ ILDV+ ++T +
Sbjct: 487 NASYLAFTATPKNTTLEKFGQKQPDGSYKPFHLYSMKQAIEEDFILDVLASYNTYK 542
Score = 77.4 bits (189), Expect = 2e-12
Identities = 68/204 (33%), Positives = 98/204 (47%), Gaps = 25/204 (12%)
Query: 614 QDQMLIKTKAQFIINHLLYTKNKHDNKLFKSRA--MLVCSGRKGLLIYKKYLDQLISQLP 671
+ Q I KA+ +++H + + + KL K +A M+V + + Y K + + + +
Sbjct: 572 RQQQTINIKAEIMLDHFI--PHVVNPKLLKGKAKGMVVTQNIETAIRYYKAICRQLKERG 629
Query: 672 IEEQFDSIAAFSPFIQEGKSMVESDPMINGKYAPYGTDKNRGIIKALNDDK--QFNIRLL 729
F I AFS G+ V+ Y + G DK RLL
Sbjct: 630 --NPFKVILAFS-----GEKTVDG--------IEYTESEVNGFADTETKDKFDTDEYRLL 674
Query: 730 IVADKLQTGFDEPSLSIMYVDKKLKGANAVQTLSRLSR----ISKDKEATAIIDFVNTEK 785
IVA+K TGFD+P LS MYVDKKL+G AVQ LSRL+R + K E I+DF N+
Sbjct: 675 IVANKYLTGFDQPKLSAMYVDKKLQGVLAVQALSRLNRSAQKLDKRTEDLFILDFFNSTD 734
Query: 786 DMDFIFNLYKHSTSLRDLQDTQTL 809
D+ F+ + STSL + D L
Sbjct: 735 DIKKSFDDFYTSTSLSEATDVNVL 758
>gi|45522101|ref|ZP_00173617.1| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Methylobacillus flagellatus KT]
Length = 1022
Score = 82.0 bits (201), Expect = 9e-14
Identities = 72/271 (26%), Positives = 119/271 (43%), Gaps = 17/271 (6%)
Query: 271 PRTHQWDTIVSVLKDLISPQHMKSFKSENRYNYLIQHAAGSGKSLTIACLVYFLYKL-EI 329
PR HQ D + ++ H + S NYLIQH+AGSGKS +IA L + L L +
Sbjct: 287 PRYHQLDAVRKMVA------HAREQGSGR--NYLIQHSAGSGKSNSIAWLAHRLASLHDA 338
Query: 330 NNKHKFDTIVIMNDRSQLDAQLGDVVIKFLTSNGITNFCRPKSSKQLQNEILSGKNRVVI 389
++ F ++V++ DR LD QL + + +F G+ + ++QL + G ++I
Sbjct: 339 QDQKVFHSVVVVTDRRVLDQQLQNTIYQFEHKTGVVEKI-DEDTQQLARALSQG-TPIII 396
Query: 390 TTMQKF---SQLLPNKSXXXXXXXXXXXXXXXXXXXXYANSXXXXXXXNNEDD--NQFSF 444
TT+QKF SQ L A+S N+
Sbjct: 397 TTIQKFPFISQALSTLERKGAGVKIDTAGRRFAVIVDEAHSSQSGETATALRGMLNRDGI 456
Query: 445 KSNSVAIISDEAHRSHGKSTTEKLHEFLSGNTRQSSKITYFSFTCTPTTQCLEMFGIASK 504
++ A +SDE L RQ + +++F+FT TP + +F
Sbjct: 457 EAAIAAQMSDEEDDDLSAEARAALLRDALKRARQPN-LSFFAFTATPKFKTKVLFDEPGP 515
Query: 505 GDKIPFYTYSMHNALEDKLILDVIKQFSTLR 535
PF+ Y+M A+E+ I+DV++ ++T +
Sbjct: 516 SGTSPFHEYTMRQAIEEGFIMDVLQNYTTYK 546
Score = 81.3 bits (199), Expect = 2e-13
Identities = 56/167 (33%), Positives = 83/167 (49%), Gaps = 8/167 (4%)
Query: 643 KSRAMLVCSGRKGLLIYKKYLDQLISQLPIEEQFDSIAAFSPFIQEGKSMVESDPMINGK 702
+++AM+V R + YK DQ I S+ AFS +++ DP
Sbjct: 603 RAKAMVVTGSRLAAVKYKLAFDQYIKANGYTG-IRSLVAFSGTVED-----PDDP--GAS 654
Query: 703 YAPYGTDKNRGIIKALNDDKQFNIRLLIVADKLQTGFDEPSLSIMYVDKKLKGANAVQTL 762
Y + + ++ + R+L+VA+K QTGFD+P L MYV KKL G AVQTL
Sbjct: 655 YTEVSMNDGLAESELPETFERDDYRVLLVAEKYQTGFDQPLLQTMYVVKKLAGVQAVQTL 714
Query: 763 SRLSRISKDKEATAIIDFVNTEKDMDFIFNLYKHSTSLRDLQDTQTL 809
SRL+R++ K T ++DF N E D+ F Y +T + + D L
Sbjct: 715 SRLNRMAPGKARTFVLDFANEEDDIFKAFKPYYEATPIGENADPHRL 761
>gi|56900920|gb|AAW31753.1| type I restriction enzyme HsdR [Vibrio
cholerae]
Length = 339
Score = 81.3 bits (199), Expect = 2e-13
Identities = 79/279 (28%), Positives = 120/279 (42%), Gaps = 77/279 (27%)
Query: 269 FKPRTHQWDTIVSVLKDLISPQHMKSFKSENRYNYLIQHAAGSGKSLTIACLVYFL---Y 325
F PR HQ D +V L D S + YLIQH+AGSGKS +I Y L Y
Sbjct: 110 FFPRYHQMD-VVRRLVDHCSVNGVGQ-------TYLIQHSAGSGKSNSITWAAYQLIETY 161
Query: 326 KLEIN---NKHK----FDTIVIMNDRSQLDAQLGDVVIKFLTSNGITNFCRPK-SSKQLQ 377
+ + ++ K FD+++++ DR LD QL D + +F + + N P S +L+
Sbjct: 162 PISDDLPGSRGKEVPLFDSVIVVTDRRLLDKQLRDNIKEF---SEVKNIVAPAFKSSELK 218
Query: 378 NEILSGKNRVVITTMQKFSQLLPNKSXXXXXXXXXXXXXXXXXXXXYANSXXXXXXXNNE 437
+ + +GK +++ITT+QKF ++
Sbjct: 219 SALENGK-KIIITTIQKFPYIV-------------------------------------- 239
Query: 438 DDNQFSFKSNSVAIISDEAHRSHGKSTTEKLHEFL--------------SGNTRQSSKIT 483
D A+I DEAH S +KL+E + + N + S +
Sbjct: 240 -DGIADLSDRRFAVIIDEAHSSQDGHNQDKLNEAMGFVSEDVLDKALQSAKNRKMRSNAS 298
Query: 484 YFSFTCTPTTQCLEMFG-IASKGDKIPFYTYSMHNALED 521
YF+FT TP LE FG + G +PF+ YSM A+E+
Sbjct: 299 YFAFTATPKNTTLEKFGQRQADGTYVPFHLYSMKQAIEE 337
>gi|53692041|ref|ZP_00347095.1| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Desulfovibrio desulfuricans G20]
Length = 984
Score = 75.9 bits (185), Expect = 7e-12
Identities = 111/491 (22%), Positives = 185/491 (37%), Gaps = 127/491 (25%)
Query: 304 LIQHAAGSGKSLTIACLVYFLYKLEINNKHKFDTIVIMNDRSQLDAQLGDVVIKFLTSNG 363
LI H GSGKSL +V+ KL ++ K T++I+ DR LD Q + +
Sbjct: 303 LIWHFQGSGKSLL---MVFAAQKLRMHRKLGNPTVMIVVDRIDLDTQ----ITATFNAAD 355
Query: 364 ITNFCRPKSSKQLQNEILSGKNRVVITTMQKFSQLLPNKSXXXXXXXXXXXXXXXXXXXX 423
I N + ++LQ + + +++ITT+ KF
Sbjct: 356 IPNMIGAATRQELQGLLAADTRKIIITTIHKFG--------------------------- 388
Query: 424 YANSXXXXXXXNNEDDNQFSFKSNSVAIISDEAHRSHGKSTTEKLHEFLSGNTRQSSKIT 483
E D + + +SN + ++ DEAHR+ K+ + L
Sbjct: 389 -------------EADGRLNERSNIIVMV-DEAHRTQEGDLGRKMRDALPN-------AF 427
Query: 484 YFSFTCTPTTQ----CLEMFGIASKGDKIPFYTYSMHNALEDKLILDVIKQFSTLRLNEV 539
F T TP + FG A + ++ YS +++ DK L + + ++L+ +
Sbjct: 428 LFGLTGTPINKRDRNTFWAFG-ADEDEQGYMSRYSFQDSIRDKATLPLHFEAVDVKLH-I 485
Query: 540 NVDSFXXXXXXXXXXXXXXXXXXXXXXXXYNEEAXXXXXXXXXXXXXXXXXXXXXXCFLN 599
N D+ +EA
Sbjct: 486 NKDAI--------------------------DEAYSQMTDELS----------------- 502
Query: 600 GIDFDDDQYEDETIQDQMLIKTKAQF--IINHLL-YTKNKHDNKLFKSRAMLVCSGRKGL 656
+ D D + +LIK A+ I H++ + + K + FK A +V R+
Sbjct: 503 --ELDRDDLAKRAAKMAVLIKAPARVNAICQHIVKHFQEKVEPNGFK--AQVVTFDRECC 558
Query: 657 LIYKKYLDQLISQLPIEEQFDSIAAFSPFIQEGKSMVESDPMINGKYAPYGTDKNRGIIK 716
++YKK +D+L+ +A Q GKS D K A +K +
Sbjct: 559 VLYKKAMDELVGP--------EASAIVMHTQGGKS----DEYAEWKLAKDEEEKLLDRFR 606
Query: 717 ALNDDKQFNIRLLIVADKLQTGFDEPSLSIMYVDKKLKGANAVQTLSRLSRISKDKEATA 776
ND +F LIV KL TGFD P L +MY+DK +K N +Q + R +R+ K
Sbjct: 607 DPNDPLKF----LIVTSKLLTGFDAPILQVMYLDKPMKDHNLLQAICRTNRVYSGKTHGL 662
Query: 777 IIDFVNTEKDM 787
++D++ D+
Sbjct: 663 VVDYLGIFDDV 673
>gi|58038318|ref|YP_190287.1| Putative type I restriction enzyme
[Gluconobacter oxydans 621H]
gb|AAW59631.1| Putative type I restriction enzyme [Gluconobacter oxydans 621H]
Length = 1098
Score = 74.3 bits (181), Expect = 2e-11
Identities = 47/152 (30%), Positives = 76/152 (49%), Gaps = 17/152 (11%)
Query: 645 RAMLVCSGRKGLLIYKKYLDQLISQLPIEEQFDSIAAFSP--------FIQEGKSMVESD 696
+ ML C + + YK+YLD++ F+S SP + E K D
Sbjct: 586 KGMLACDSKLSAIRYKQYLDEV-------GLFESAIVMSPPDTREGHTEVDERKQPEIQD 638
Query: 697 PMINGKYAPYGTDKNRGIIKALNDDKQFNIRLLIVADKLQTGFDEPSLSIMYVDKKLKGA 756
N + D RG+I+ D ++RL+IV DKL TGFDEP +++Y+DK LK
Sbjct: 639 WWKNNVGSQSEDDYTRGVIERFEKDP--DLRLIIVVDKLLTGFDEPKNAVLYIDKPLKQH 696
Query: 757 NAVQTLSRLSRISKDKEATAIIDFVNTEKDMD 788
N +Q ++R++R+ K+ +ID+ ++D
Sbjct: 697 NLLQAIARVNRLHDQKKHGLLIDYRGILAELD 728
>gi|49257051|dbj|BAD24840.1| type I restriction-modification system
endonuclease homologue [Staphylococcus aureus]
Length = 1039
Score = 73.9 bits (180), Expect = 3e-11
Identities = 54/203 (26%), Positives = 91/203 (44%), Gaps = 13/203 (6%)
Query: 619 IKTKAQFIINHLLYTKNKHDNKLFKSRAMLVCSGRKGLLIYKKYLDQLISQLPIEEQFDS 678
++ A+ II H + + K + M+V R+ I D++I P D
Sbjct: 541 VEALAKDIIQHF-----ETRQQAMKGKGMIVTMSRR---IAVDLYDEIIRLKPEWHSDDD 592
Query: 679 IAAFSPFIQEGKSMVESDPMINGKYAPYGTDKNRGIIKALNDDKQFNIRLLIVADKLQTG 738
+ G S SDP ++ G K R +++ D ++L+IV D TG
Sbjct: 593 DKGVIKVVMTGSS---SDPTSFQRHI--GPKKRRNVLEKRMKDVNDELQLVIVRDMWLTG 647
Query: 739 FDEPSLSIMYVDKKLKGANAVQTLSRLSRISKDKEATAIIDFVNTEKDMDFIFNLYKHST 798
FD PS+ MY+DK +KG N +Q ++R++R+ KDK I+D+V + + Y S
Sbjct: 648 FDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESD 707
Query: 799 SLRDLQDTQTLISSLIMAGRSIQ 821
+ DT + +++ IQ
Sbjct: 708 QAQTAIDTDKAVELMLLKYDVIQ 730
Score = 42.4 bits (98), Expect = 0.083
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 15/99 (15%)
Query: 304 LIQHAAGSGKSLTIACLVYFLYKL--EINNKHKFDTIVIMNDRSQLDAQLGDVVIKFLTS 361
+I H GSGKSLT +V+F KL +NN T+V++ DR+ LD QL +K
Sbjct: 298 VIWHTQGSGKSLT---MVFFSGKLIQMLNNP----TLVVVTDRNDLDNQLYSTFVKSKGR 350
Query: 362 NGITNFCR--PKSS---KQLQNEILSGKNRVVITTMQKF 395
+G R PK + K+L++ + ++ TTMQKF
Sbjct: 351 SG-KGLLRQTPKQAETRKELKSLLSVESGGIIFTTMQKF 388
>gi|19919302|gb|AAM08232.1| putative type I restriction enzyme
[Legionella pneumophila]
Length = 1090
Score = 71.6 bits (174), Expect = 1e-10
Identities = 57/210 (27%), Positives = 101/210 (47%), Gaps = 36/210 (17%)
Query: 645 RAMLVCSGRKGLLIYKKYLDQLISQLPIEEQFDSIAAFSP-FIQEGKSMVES-------- 695
+ L C + + YKKYLD + F+S SP +EG + V+
Sbjct: 585 KGQLACDSKLSAIRYKKYLDDV-------GLFESAVVMSPPDTREGNTEVDESKIPEVTK 637
Query: 696 ---DPMINGKYAPYGTDKNRGIIKALNDDKQFNIRLLIVADKLQTGFDEPSLSIMYVDKK 752
D + N + Y R +I+ +D+ +++++IV DKL TGFDEP +++Y+DK+
Sbjct: 638 WWKDNVGNQEEREY----TRQVIERFANDE--DLKIIIVVDKLLTGFDEPRNTVLYIDKQ 691
Query: 753 LKGANAVQTLSRLSRISKDKEATAIIDFVNTEKDMDFIFNLYKHSTS-------LRDLQD 805
LK N +Q ++R++R+ + K+ +ID+ K++D Y+ S + DL
Sbjct: 692 LKEHNLIQAIARVNRLHEKKKFGLLIDYRGILKELDTTIAKYQDLASRTQQGYDITDLDG 751
Query: 806 TQTLISS----LIMAGRSIQKVFEKEKRAG 831
+SS L + ++ K+F + K G
Sbjct: 752 LYHQMSSEYKRLPLLYDALWKIFNEVKNKG 781
Score = 51.2 bits (121), Expect = 2e-04
Identities = 59/247 (23%), Positives = 101/247 (40%), Gaps = 60/247 (24%)
Query: 304 LIQHAAGSGKSLTIACLVYFLYKLEINNKHKFDTIVIMNDRSQLDAQLGDVVIKFLTSNG 363
+I H GSGKSLT +V+ L +++ K IV++ DR L+ QL + +G
Sbjct: 340 VIWHTTGSGKSLT---MVFLSRALILHDSLKQCRIVVVTDRVDLERQLSNTFHSGGEFSG 396
Query: 364 ITNFCRPK--SSKQLQNEILSGKNRVVITTMQKFSQL--LPNKSXXXXXXXXXXXXXXXX 419
T F K S ++L +I G RV+ + +QKF+ LP
Sbjct: 397 KTEFSNAKATSGRRLAEQISKGTERVIFSLIQKFNTAAKLP------------------- 437
Query: 420 XXXXYANSXXXXXXXNNEDDNQFSFKSNSVAIISDEAHRSHGKSTTEKLHEFLSGNTRQS 479
Q S + ++ DE HRS G ++ + L
Sbjct: 438 ---------------------QCKNLSRDIVVLVDEGHRSQGGENYIRMKQAL------- 469
Query: 480 SKITYFSFTCTPTTQCLEMFGIASKGDKIPFYTYSMHNALEDKLILDVI--KQFSTLRLN 537
+ +FT TP L+ +K I + Y++ A+EDK++ ++ ++ L +N
Sbjct: 470 PNAAFIAFTGTP---LLKEDKTTNKFGSI-IHAYTIQRAVEDKMVTPLLYEERRPELMVN 525
Query: 538 EVNVDSF 544
+ +DS+
Sbjct: 526 DRAIDSW 532
>gi|46141215|ref|ZP_00145477.2| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Psychrobacter sp. 273-4]
Length = 1060
Score = 69.7 bits (169), Expect = 5e-10
Identities = 58/207 (28%), Positives = 100/207 (48%), Gaps = 31/207 (14%)
Query: 619 IKTKAQFIINHLLYTKNKHDNKLFKSRAMLVCSGRKGLLIYKKYLDQLISQLPIEEQFDS 678
I+ A+ + H Y + K +AM VCS R+ Y+ Y D + + ++D
Sbjct: 538 IRAIAEDFVQH--YEARVAEGTTQKGKAMFVCSSREAA--YQLYKDII----ELHPEWDE 589
Query: 679 IAAFSPFIQEGKSMVESD-----PMINGKYA-PYGTDKNRGIIKALND-------DKQF- 724
I A +EG ++ ESD P+ K D +G+ L + D+QF
Sbjct: 590 IRA----CEEGSTLSESDKKKVMPIERVKMIMTRNKDDEKGMWDNLGNKDYRKELDRQFK 645
Query: 725 ----NIRLLIVADKLQTGFDEPSLSIMYVDKKLKGANAVQTLSRLSRISKDKEATAIIDF 780
N ++ IV D TGFD P L +Y+DK L+ + +QT+SR++R + KE+ ++D+
Sbjct: 646 NGKSNFKIAIVVDMWLTGFDVPFLDTIYIDKPLQKHSLIQTISRVNRKFEGKESGLVVDY 705
Query: 781 VNTEKDMDFIFNLYKHSTSLRDLQDTQ 807
+ +K M+ + Y +++L+D Q
Sbjct: 706 IGIKKQMNLALSHYT-GGQIQNLEDIQ 731
>gi|42525030|ref|NP_970410.1| type I restriction-modification system
restriction subunit [Bdellovibrio bacteriovorus HD100]
emb|CAE81064.1| type I restriction-modification system restriction subunit
[Bdellovibrio bacteriovorus HD100]
Length = 1075
Score = 69.3 bits (168), Expect = 6e-10
Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 22/211 (10%)
Query: 609 EDETIQDQMLIKTKAQFIINHLLYTKN-KHDNKLFKS--RAMLVCSGRKGLLIYKKYLDQ 665
E+E ++ I+ A I NH Y +N + + + K + L + + L YK+YLD+
Sbjct: 555 EEEILKADDRIRAIALDIKNH--YRENFRQEGEPTKDFMKGQLATNTKGEALAYKRYLDE 612
Query: 666 LISQLPIEEQFDSIAAFSPFIQEGKSMVESD--PMI----NGKYAPYGTDKNRGIIKALN 719
+ S+ P ++EG +E D P + + YG+ K N
Sbjct: 613 FGIRT-------SLVISPPEMREGSKSIEDDDRPEVVKFWDECMKRYGSAKKYQDTIIDN 665
Query: 720 DDKQFNIRLLIVADKLQTGFDEPSLSIMYVDKKLKGANAVQTLSRLSRISKDKEATAIID 779
K +LIV DKL TGFD P +++Y+DKKLK N +Q ++R++R+ K +ID
Sbjct: 666 FKKDDVPEILIVVDKLLTGFDAPRNAVLYIDKKLKEHNVLQAIARVNRLYPRKSEGLVID 725
Query: 780 FVNTEKDM----DFIFNLYKHSTSLRDLQDT 806
+ DM DF + + L D++DT
Sbjct: 726 YRGIFDDMTQAIDFYRKMEGNDIDLEDIKDT 756
>gi|15795175|ref|NP_247089.2| Type I restriction-modification
enzyme, helicase subunit [Methanocaldococcus jannaschii
DSM 2661]
Length = 1163
Score = 68.6 bits (166), Expect = 1e-09
Identities = 58/210 (27%), Positives = 101/210 (47%), Gaps = 18/210 (8%)
Query: 623 AQFIINHLLYTKNKHDNKLFKSRAMLVCSGRKGLLIYKKYLDQLISQL--PIEEQFDSIA 680
A++I++ + + D + FK +AM+V R G + +KK LD+ + + E++ +
Sbjct: 638 AKYIVDRI-----EEDTENFKFKAMVVAVNRLGCVRFKKALDKYLKEKFGDEAEKWAEVV 692
Query: 681 AFSPFIQEGKSMVESDPMINGKYAPYGTDKNRGIIKA--LNDDKQFNIRLLIVADKLQTG 738
+E K ++E + + ++ II+ LN + N ++LIV D L TG
Sbjct: 693 MTYHHNEEEKEIIEYMKKLKKERNSNDFNEINQIIREEFLNSE---NPKILIVTDMLLTG 749
Query: 739 FDEPSLSIMYVDKKLKGANAVQTLSRLSRISKDKEATAIIDFVNTEKDMDFIFNLYKHST 798
FD P L +MY+DK L G +Q ++R +R DKE I+D V K + LY
Sbjct: 750 FDAPRLKVMYLDKPLYGHRLLQAIARTNRPYPDKEFGLIVDSVGLFKVLTETMALYNMLA 809
Query: 799 SLRDLQDTQTLISSLIMAGRSIQKVFEKEK 828
+D + + S SI ++F++ K
Sbjct: 810 EEEIREDFKNNLIS------SIDEIFQEFK 833
>gi|2826244|gb|AAB98104.1| type I restriction-modification enzyme 2,
R subunit [Methanocaldococcus jannaschii DSM 2661]
sp|Q57588|Y124_METJA Hypothetical protein MJ0124
Length = 1075
Score = 68.6 bits (166), Expect = 1e-09
Identities = 58/210 (27%), Positives = 101/210 (47%), Gaps = 18/210 (8%)
Query: 623 AQFIINHLLYTKNKHDNKLFKSRAMLVCSGRKGLLIYKKYLDQLISQL--PIEEQFDSIA 680
A++I++ + + D + FK +AM+V R G + +KK LD+ + + E++ +
Sbjct: 550 AKYIVDRI-----EEDTENFKFKAMVVAVNRLGCVRFKKALDKYLKEKFGDEAEKWAEVV 604
Query: 681 AFSPFIQEGKSMVESDPMINGKYAPYGTDKNRGIIKA--LNDDKQFNIRLLIVADKLQTG 738
+E K ++E + + ++ II+ LN + N ++LIV D L TG
Sbjct: 605 MTYHHNEEEKEIIEYMKKLKKERNSNDFNEINQIIREEFLNSE---NPKILIVTDMLLTG 661
Query: 739 FDEPSLSIMYVDKKLKGANAVQTLSRLSRISKDKEATAIIDFVNTEKDMDFIFNLYKHST 798
FD P L +MY+DK L G +Q ++R +R DKE I+D V K + LY
Sbjct: 662 FDAPRLKVMYLDKPLYGHRLLQAIARTNRPYPDKEFGLIVDSVGLFKVLTETMALYNMLA 721
Query: 799 SLRDLQDTQTLISSLIMAGRSIQKVFEKEK 828
+D + + S SI ++F++ K
Sbjct: 722 EEEIREDFKNNLIS------SIDEIFQEFK 745
>gi|2129335|pir||D64315 type I restriction enzyme homolog -
Methanococcus jannaschii
Length = 1163
Score = 68.6 bits (166), Expect = 1e-09
Identities = 58/210 (27%), Positives = 101/210 (47%), Gaps = 18/210 (8%)
Query: 623 AQFIINHLLYTKNKHDNKLFKSRAMLVCSGRKGLLIYKKYLDQLISQL--PIEEQFDSIA 680
A++I++ + + D + FK +AM+V R G + +KK LD+ + + E++ +
Sbjct: 638 AKYIVDRI-----EEDTENFKFKAMVVAVNRLGCVRFKKALDKYLKEKFGDEAEKWAEVV 692
Query: 681 AFSPFIQEGKSMVESDPMINGKYAPYGTDKNRGIIKA--LNDDKQFNIRLLIVADKLQTG 738
+E K ++E + + ++ II+ LN + N ++LIV D L TG
Sbjct: 693 MTYHHNEEEKEIIEYMKKLKKERNSNDFNEINQIIREEFLNSE---NPKILIVTDMLLTG 749
Query: 739 FDEPSLSIMYVDKKLKGANAVQTLSRLSRISKDKEATAIIDFVNTEKDMDFIFNLYKHST 798
FD P L +MY+DK L G +Q ++R +R DKE I+D V K + LY
Sbjct: 750 FDAPRLKVMYLDKPLYGHRLLQAIARTNRPYPDKEFGLIVDSVGLFKVLTETMALYNMLA 809
Query: 799 SLRDLQDTQTLISSLIMAGRSIQKVFEKEK 828
+D + + S SI ++F++ K
Sbjct: 810 EEEIREDFKNNLIS------SIDEIFQEFK 833
>gi|53688022|ref|ZP_00109780.2| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Nostoc punctiforme PCC 73102]
Length = 1078
Score = 68.2 bits (165), Expect = 1e-09
Identities = 62/250 (24%), Positives = 116/250 (45%), Gaps = 34/250 (13%)
Query: 603 FDDDQYED----ETIQDQMLIKTKAQFIINHLLYTKNKHDNKLFKSRAMLVCSGRKGLLI 658
F++ Y+D + +++ I AQ+I + L K+ + +AML K +
Sbjct: 615 FEEPNYKDADKKQIYENRDRINAIAQYIAD--LLVKDVYRQIRGTGKAMLAVYSIKAAIA 672
Query: 659 YKKYLDQLISQLPIEEQFDSIAAFSPFIQEGKSMVESDPMINGKYAPYGTDKNR-GIIKA 717
YK+ + Q ++L +++ K +D I+ Y+ ++N G+
Sbjct: 673 YKQAVTQHFNEL---------------VKQPKYAKYTDAPIHVVYSSNQDEQNATGLNNG 717
Query: 718 LNDDK---QFNIR---LLIVADKLQTGFDEPSLSIMYVDKKLKGANAVQTLSRLSRISKD 771
L ++K F ++ L+IV KLQTGFDE L +++DK++KG A+Q +SR+ R +K
Sbjct: 718 LTEEKVLESFALKKNGLIIVVAKLQTGFDEKRLHTLFLDKEIKGIAAIQAISRVDRTAKY 777
Query: 772 KEATAIIDFVNTEKDMDFIFNLYKHSTSLRDLQDTQTLISSLIMAGRSIQKVFEKEKRAG 831
K I+DF ++ I + ++H D R ++ +F + K++G
Sbjct: 778 KNDCKIVDFSYNNVNVQNIKDAFEH------FSDVVVSDFDPFSDKRVLEILFAELKKSG 831
Query: 832 LITPFCKAIL 841
+ T F + L
Sbjct: 832 VYTEFFETFL 841
Score = 59.7 bits (143), Expect = 5e-07
Identities = 61/249 (24%), Positives = 96/249 (38%), Gaps = 53/249 (21%)
Query: 297 SENRYNYLIQHAAGSGKSLTIACLVYFLYKLEINNKHKFDTIVIMNDRSQLDAQLGDVVI 356
++N Y+ L+Q+AAG GKS I L L N ++ +D I+I+ DR QL +Q+
Sbjct: 383 NKNVYSLLLQYAAGFGKSNIIGWTALQLKDLRRNGQYVYDKIMIVVDRLQLRSQIDS--- 439
Query: 357 KFLTSNGITNFCRPKSSKQLQNEILSGKNRVVITTMQKFSQLLPNKSXXXXXXXXXXXXX 416
K L N ++K+ + L R+VI +QKF +
Sbjct: 440 KMLNMNIDNRMYIEANNKKTFQDALQSDTRLVIVNLQKFGAV------------------ 481
Query: 417 XXXXXXXYANSXXXXXXXNNEDDNQFSFKSNSVAIISDEAHRSHGKSTTEKLHEFLSG-- 474
+ D + + DE HRS+ E++
Sbjct: 482 ----------------REMLDADTLQKLAQLRIVFLIDEIHRSNSGDQHEEMVNIFDELQ 525
Query: 475 ---------NTRQSSKITYFSFTCTPTTQCLEMFGIAS---KGDK--IPFYTYSMHNALE 520
N ++ K FT TP L FG S + +K +PF +Y+M A+E
Sbjct: 526 TPFDQQTQYNQTRTKKNLIVGFTATPDDHTLARFGEFSGYAESEKLWVPFDSYTMKEAIE 585
Query: 521 DKLILDVIK 529
D IL+ +K
Sbjct: 586 DGFILNPLK 594
>gi|6968968|emb|CAB73965.1| putative type I restriction enzyme R
protein [Campylobacter jejuni subsp. jejuni NCTC 11168]
gb|AAM00885.1| HsdR [Campylobacter jejuni]
pir||C81302 probable type I site-specific deoxyribonuclease (EC 3.1.21.3) chain
R Cj1549c [imported] - Campylobacter jejuni (strain
NCTC 11168)
ref|NP_282680.1| putative type I restriction enzyme R protein [Campylobacter jejuni
subsp. jejuni NCTC 11168]
Length = 1031
Score = 67.4 bits (163), Expect = 2e-09
Identities = 34/106 (32%), Positives = 59/106 (55%), Gaps = 5/106 (4%)
Query: 726 IRLLIVADKLQTGFDEPSLSIMYVDKKLKGANAVQTLSRLSRISKDKEATAIIDFVNTEK 785
++L+IV D TGFD PSL +Y+DK +KG N +Q ++R++R+ KDK + ++D++
Sbjct: 630 LKLVIVVDMWLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPSGLVVDYLGIAS 689
Query: 786 DMDFIFNLYKHSTSLRDLQDTQ-----TLISSLIMAGRSIQKVFEK 826
D+ + Y S D+ TQ +I L + + + +EK
Sbjct: 690 DLKKALSFYSESGGKGDIITTQEDAVKVMIEKLEIVEQMLPNDYEK 735
>gi|19881241|gb|AAM00850.1| HsdR [Campylobacter jejuni]
Length = 1031
Score = 67.4 bits (163), Expect = 2e-09
Identities = 34/106 (32%), Positives = 59/106 (55%), Gaps = 5/106 (4%)
Query: 726 IRLLIVADKLQTGFDEPSLSIMYVDKKLKGANAVQTLSRLSRISKDKEATAIIDFVNTEK 785
++L+IV D TGFD PSL +Y+DK +KG N +Q ++R++R+ KDK + ++D++
Sbjct: 630 LKLVIVVDMWLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPSGLVVDYLGIAS 689
Query: 786 DMDFIFNLYKHSTSLRDLQDTQ-----TLISSLIMAGRSIQKVFEK 826
D+ + Y S D+ TQ +I L + + + +EK
Sbjct: 690 DLKKALSFYSESGGKGDIITTQEDAVKVMIEKLEIVEQMLPNDYEK 735
>gi|19881235|gb|AAM00845.1| HsdR [Campylobacter jejuni]
Length = 1031
Score = 67.4 bits (163), Expect = 2e-09
Identities = 34/106 (32%), Positives = 59/106 (55%), Gaps = 5/106 (4%)
Query: 726 IRLLIVADKLQTGFDEPSLSIMYVDKKLKGANAVQTLSRLSRISKDKEATAIIDFVNTEK 785
++L+IV D TGFD PSL +Y+DK +KG N +Q ++R++R+ KDK + ++D++
Sbjct: 630 LKLVIVVDMWLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPSGLVVDYLGIAS 689
Query: 786 DMDFIFNLYKHSTSLRDLQDTQ-----TLISSLIMAGRSIQKVFEK 826
D+ + Y S D+ TQ +I L + + + +EK
Sbjct: 690 DLKKALSFYSESGGKGDIITTQEDAVKVMIEKLEIVEQMLPNDYEK 735
>gi|19881208|gb|AAM00823.1| HsdR [Campylobacter jejuni]
Length = 1031
Score = 67.4 bits (163), Expect = 2e-09
Identities = 34/106 (32%), Positives = 59/106 (55%), Gaps = 5/106 (4%)
Query: 726 IRLLIVADKLQTGFDEPSLSIMYVDKKLKGANAVQTLSRLSRISKDKEATAIIDFVNTEK 785
++L+IV D TGFD PSL +Y+DK +KG N +Q ++R++R+ KDK + ++D++
Sbjct: 630 LKLVIVVDMWLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPSGLVVDYLGIAS 689
Query: 786 DMDFIFNLYKHSTSLRDLQDTQ-----TLISSLIMAGRSIQKVFEK 826
D+ + Y S D+ TQ +I L + + + +EK
Sbjct: 690 DLKKALSFYSESGGKGDIITTQEDAVKVMIEKLEIVEQMLPNDYEK 735
>gi|19881202|gb|AAM00818.1| HsdR [Campylobacter jejuni]
Length = 1031
Score = 67.4 bits (163), Expect = 2e-09
Identities = 34/106 (32%), Positives = 59/106 (55%), Gaps = 5/106 (4%)
Query: 726 IRLLIVADKLQTGFDEPSLSIMYVDKKLKGANAVQTLSRLSRISKDKEATAIIDFVNTEK 785
++L+IV D TGFD PSL +Y+DK +KG N +Q ++R++R+ KDK + ++D++
Sbjct: 630 LKLVIVVDMWLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPSGLVVDYLGIAS 689
Query: 786 DMDFIFNLYKHSTSLRDLQDTQ-----TLISSLIMAGRSIQKVFEK 826
D+ + Y S D+ TQ +I L + + + +EK
Sbjct: 690 DLKKALSFYSESGGKGDIITTQEDAVKVMIEKLEIVEQMLPNDYEK 735
>gi|56419917|ref|YP_147235.1| type I restriction-modification system
specificity protein [Geobacillus kaustophilus HTA426]
dbj|BAD75667.1| type I restriction-modification system specificity protein
[Geobacillus kaustophilus HTA426]
Length = 1021
Score = 66.2 bits (160), Expect = 5e-09
Identities = 47/179 (26%), Positives = 81/179 (44%), Gaps = 13/179 (7%)
Query: 619 IKTKAQFIINHLLYTKNKHDNKLFKSRAMLVCSGRKGLLIYKKYLDQLISQLPIEEQFDS 678
++ A+ I++H N +AM+VC R+ + YL ++ P+E
Sbjct: 522 LRRLAKDIVSHFNQVANPFQ------KAMIVCMSRRIAVDLYNYLREIPECPPVEVIMTG 575
Query: 679 IAAFSPFIQEGKSMVESDPMINGKYAPYGTDKNRGIIKALNDDKQFNIRLLIVADKLQTG 738
+ P K E P KYA + K + +KA D + ++ +IV D TG
Sbjct: 576 DVSKDP-----KEWREVQP--GSKYAHIKSKKEQEEVKAKLRDPEDPLKFVIVVDMWLTG 628
Query: 739 FDEPSLSIMYVDKKLKGANAVQTLSRLSRISKDKEATAIIDFVNTEKDMDFIFNLYKHS 797
D LS +YVDK +KG N +Q ++R++R+ KE ++D++ + + Y S
Sbjct: 629 MDAKPLSYLYVDKPMKGHNLMQAIARVNRVFPGKEGGVVVDYIGIATSLKEATHKYTQS 687
Score = 40.0 bits (92), Expect = 0.41
Identities = 50/232 (21%), Positives = 90/232 (38%), Gaps = 64/232 (27%)
Query: 304 LIQHAAGSGKSLTIACLVYFLYKLEINNKHKFDTIVIMNDRSQLDAQLGDVVIKFLTSNG 363
++ H GSGKSL+ +++F L + + + +IVI DR+ LD QL D ++ +
Sbjct: 293 VMYHTTGSGKSLS---MLFFAGILSRHPEMENPSIVIQVDRNDLDEQLHDTFVQ--GKSY 347
Query: 364 ITNFCRPKSSKQLQNEILSGKNRVVITTMQKFSQLLPNKSXXXXXXXXXXXXXXXXXXXX 423
I + ++++QL+ + +++ +T++KF +
Sbjct: 348 IGHVHHAENTEQLRTLLRGEAGQIIFSTIEKFRK-------------------------- 381
Query: 424 YANSXXXXXXXNNEDDNQFSFKSNSVAIISDEAHRSHGKSTTEKLHEFLSGNTRQ----S 479
E + + ++ +I+DEAHR+ F G Q
Sbjct: 382 ----------KEGETRHPVLSERRNIVVIADEAHRTQA--------GFAGGFAAQLRYAL 423
Query: 480 SKITYFSFTCTPT----TQCLEMFGIASKGDKIPFYTYSMHNALEDKLILDV 527
+Y FT TP E+FG + Y M A+EDK L +
Sbjct: 424 PNASYIGFTGTPVDFVDNNTEEIFGHI-------IHRYDMAQAVEDKATLPI 468
>gi|15669399|ref|NP_248209.1| type I restriction-modification enzyme
1, R subunit [Methanocaldococcus jannaschii DSM 2661]
gb|AAB99215.1| type I restriction-modification enzyme 1, R subunit
[Methanocaldococcus jannaschii DSM 2661]
sp|Q58611|YC14_METJA Hypothetical protein MJ1214
Length = 1018
Score = 66.2 bits (160), Expect = 5e-09
Identities = 51/198 (25%), Positives = 94/198 (46%), Gaps = 12/198 (6%)
Query: 611 ETIQDQMLIKTKAQFIINHLLYTKNKHDNKLFKSRAMLVCSGRKGLLIYKKYLDQLISQL 670
+ ++ + IK +++I H+L D + FK +AM+V RK +++KKYLD+ + +
Sbjct: 522 DLLKSESSIKEASKYIAEHIL-----EDTENFKFKAMVVAQDRKSCILFKKYLDEYLKEK 576
Query: 671 PIEEQFDSIAAFSPFIQEGKSMVES-DPMINGKYAPYGTDKNRGIIKALNDDKQFNIRLL 729
+ +I +E+ I KY + N+ + + + N ++L
Sbjct: 577 IKNYNENWTQVVITYIHNDDVEIENYKKEIEKKYGKNVDELNKKWTEDFINKE--NPKIL 634
Query: 730 IVADKLQTGFDEPSLSIMYVDKKLKGANAVQTLSRLSRISKDKEATAIID----FVNTEK 785
IV KL TGFD P L +Y+ + LK +Q +R +R +K+K+ I+D + K
Sbjct: 635 IVNKKLLTGFDAPILKTIYIHQFLKDYLLLQASARANRPAKNKKYGLIVDLTGILIENYK 694
Query: 786 DMDFIFNLYKHSTSLRDL 803
+NLY+ +D+
Sbjct: 695 KAIENYNLYRDEAINKDI 712
>gi|2129336|pir||E64451 type I restriction enzyme homolog -
Methanococcus jannaschii
Length = 1018
Score = 66.2 bits (160), Expect = 5e-09
Identities = 51/198 (25%), Positives = 94/198 (46%), Gaps = 12/198 (6%)
Query: 611 ETIQDQMLIKTKAQFIINHLLYTKNKHDNKLFKSRAMLVCSGRKGLLIYKKYLDQLISQL 670
+ ++ + IK +++I H+L D + FK +AM+V RK +++KKYLD+ + +
Sbjct: 522 DLLKSESSIKEASKYIAEHIL-----EDTENFKFKAMVVAQDRKSCILFKKYLDEYLKEK 576
Query: 671 PIEEQFDSIAAFSPFIQEGKSMVES-DPMINGKYAPYGTDKNRGIIKALNDDKQFNIRLL 729
+ +I +E+ I KY + N+ + + + N ++L
Sbjct: 577 IKNYNENWTQVVITYIHNDDVEIENYKKEIEKKYGKNVDELNKKWTEDFINKE--NPKIL 634
Query: 730 IVADKLQTGFDEPSLSIMYVDKKLKGANAVQTLSRLSRISKDKEATAIID----FVNTEK 785
IV KL TGFD P L +Y+ + LK +Q +R +R +K+K+ I+D + K
Sbjct: 635 IVNKKLLTGFDAPILKTIYIHQFLKDYLLLQASARANRPAKNKKYGLIVDLTGILIENYK 694
Query: 786 DMDFIFNLYKHSTSLRDL 803
+NLY+ +D+
Sbjct: 695 KAIENYNLYRDEAINKDI 712
>gi|46142301|ref|ZP_00204237.1| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Methanococcoides burtonii DSM
6242]
Length = 1074
Score = 65.9 bits (159), Expect = 7e-09
Identities = 47/179 (26%), Positives = 81/179 (44%), Gaps = 13/179 (7%)
Query: 619 IKTKAQFIINHLLYTKNKHDNKLFKSRAMLVCSGRKGLLIYKKYLDQLISQLPIEEQFDS 678
I+ AQ I+ H K ++F+ + M+V R+ I D++I P D
Sbjct: 576 IRQIAQDIVTHFEQRK-----EVFEGKGMIVAMSRR---IAADLYDEIIKIKPQWHNDDF 627
Query: 679 IAAFSPFIQEGKSMVESDPMINGKYAPYGTDKNRGIIKALNDDKQFNIRLLIVADKLQTG 738
+ S P I+ + T + R + D + ++L+IV D TG
Sbjct: 628 KKGEIKIVMTSAS--SDGPKISKHHT---TKEQRRALAERMKDPEDELKLVIVRDMWLTG 682
Query: 739 FDEPSLSIMYVDKKLKGANAVQTLSRLSRISKDKEATAIIDFVNTEKDMDFIFNLYKHS 797
FD P L MY+DK +KG +Q ++R++R+ KDK + ++D++ D+ + Y S
Sbjct: 683 FDVPCLHTMYIDKPMKGHTLMQAIARVNRVYKDKPGSLVVDYLGIASDLKEALSFYSDS 741
>gi|53758784|gb|AAU93075.1| type I restriction-modification system,
R subunit [Methylococcus capsulatus str. Bath]
ref|YP_113334.1| type I restriction-modification system, R subunit [Methylococcus
capsulatus str. Bath]
Length = 1210
Score = 65.5 bits (158), Expect = 9e-09
Identities = 46/163 (28%), Positives = 80/163 (48%), Gaps = 14/163 (8%)
Query: 645 RAMLVCSGRKGLLIYKKYLDQLISQLPIEEQFDSIAAFSPFIQEGKSMVESDPMINGKYA 704
+AM+VC R+ I D+++ P D A + G + SDP ++
Sbjct: 623 KAMIVCMSRR---ICVALYDEIVRLRPDWHSADDKAGAIKIVMTGAA---SDPP---EWQ 673
Query: 705 PY-GTDKNRGIIKALNDDKQFNIRLLIVADKLQTGFDEPSLSIMYVDKKLKGANAVQTLS 763
P+ G R ++ D ++L+IV D TGFD P + MYVDK ++G +Q ++
Sbjct: 674 PHIGNKARRDLLAKRARDPNDPLKLVIVRDMWLTGFDAPCMHTMYVDKPMRGHGLMQAIA 733
Query: 764 RLSRISKDKEATAIIDFVNTEKDMDFIFNLYKHSTSLRDLQDT 806
R++R+ +DK A I+D++ +++ Y S RD ++T
Sbjct: 734 RVNRVFRDKPAGLIVDYIGIAQNLKSALAQY----SPRDRENT 772
Score = 41.6 bits (96), Expect = 0.14
Identities = 44/161 (27%), Positives = 63/161 (38%), Gaps = 17/161 (10%)
Query: 304 LIQHAAGSGKSLTIACLVYFLYKLEINNKHKFDTIVIMNDRSQLDAQLGDVVIKFLTSNG 363
+I H GSGKSL +A L K + T+V++ DR+ LD QL F T +
Sbjct: 327 VIWHTQGSGKSLLMAFYAGMLVKHPLLEN---PTLVVITDRNDLDDQL------FATFSM 377
Query: 364 ITNFCRP-----KSSKQLQNEILSGKNRVVITTMQKFSQLLPNKSXXXXXXXXXXXXXXX 418
+ R +S + LQ + V+ TT+QKF L P S
Sbjct: 378 CRDLIRQTPVQAESREHLQALLNRASGGVIFTTLQKFGPLSPGPS---PNGRGEDTGPAP 434
Query: 419 XXXXXYANSXXXXXXXNNEDDNQFSFKSNSVAIISDEAHRS 459
+A+ D +V +I+DEAHRS
Sbjct: 435 NVREEHASPSPSGRGVGVRDTPPPLTLRRNVVVIADEAHRS 475
>gi|21228306|ref|NP_634228.1| hypothetical protein MM2204