Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DDB0217577
(1465 letters)
Database: /home/dicty1/resource/WorkingDBs//nr-clean
2,329,665 sequences; 788,375,511 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|6562677|emb|CAB62838.1| hypothetical protein L5529.07 [Leishm... 326 4e-87
gi|48859946|ref|ZP_00313874.1| COG0577: ABC-type antimicrobial p... 55 1e-05
gi|42527026|ref|NP_972124.1| permease, putative [Treponema denti... 51 3e-04
gi|57168779|ref|ZP_00367910.1| ABC transporter, ATP-binding prot... 49 0.002
gi|56962482|ref|YP_174208.1| antimicrobial peptide ABC transport... 46 0.008
gi|32476753|ref|NP_869747.1| probable ABC transport system integ... 45 0.013
gi|23111965|ref|ZP_00097518.1| COG0577: ABC-type antimicrobial p... 45 0.017
gi|15901836|ref|NP_346440.1| hypothetical protein SP2013 [Strept... 44 0.037
gi|20090527|ref|NP_616602.1| hypothetical protein MA1674 [Methan... 44 0.049
gi|18314231|ref|NP_560898.1| hypothetical protein PAE3663 [Pyrob... 44 0.049
gi|57238672|ref|YP_179803.1| ABC transporter, permease protein [... 43 0.064
gi|15603689|ref|NP_246763.1| hypothetical protein PM1824 [Pasteu... 43 0.064
gi|15903868|ref|NP_359418.1| hypothetical protein spr1826 [Strep... 43 0.064
gi|10176298|dbj|BAB07393.1| ABC transporter (ATP-binding protein... 43 0.083
gi|48841198|ref|ZP_00298124.1| COG0577: ABC-type antimicrobial p... 42 0.11
gi|6969077|emb|CAB73648.1| possible ABC transport system permeas... 42 0.11
gi|22298186|ref|NP_681433.1| devC-like ABC transporter permease ... 42 0.11
gi|15602315|ref|NP_245387.1| hypothetical protein PM0450 [Pasteu... 42 0.14
gi|21228952|ref|NP_634874.1| ABC transporter, permease protein [... 42 0.14
gi|7672272|emb|CAB89462.1| putative ABC transporter integral mem... 42 0.14
gi|28897074|ref|NP_796679.1| hypothetical protein VP0300 [Vibrio... 42 0.19
gi|48838240|ref|ZP_00295187.1| COG4591: ABC-type transport syste... 42 0.19
gi|23126910|ref|ZP_00108791.1| COG0577: ABC-type antimicrobial p... 42 0.19
gi|42522660|ref|NP_968040.1| ABC-type antimicrobial peptide tran... 41 0.24
gi|19703916|ref|NP_603478.1| Lipoprotein releasing system transm... 41 0.24
gi|18313238|ref|NP_559905.1| hypothetical protein PAE2288 [Pyrob... 41 0.24
gi|34762631|ref|ZP_00143624.1| Lipoprotein releasing system tran... 41 0.24
gi|23129026|ref|ZP_00110860.1| COG0577: ABC-type antimicrobial p... 41 0.24
gi|15898611|ref|NP_343216.1| hypothetical protein SSO1810 [Sulfo... 41 0.32
gi|20091320|ref|NP_617395.1| hypothetical protein MA2489 [Methan... 41 0.32
gi|38234455|ref|NP_940222.1| Putative ABC transport system perme... 41 0.32
gi|15893817|ref|NP_347166.1| Predicted permease, domain duplicat... 41 0.32
gi|19704684|ref|NP_604246.1| ABC transporter permease protein [F... 41 0.32
gi|46106219|ref|ZP_00186780.2| COG0577: ABC-type antimicrobial p... 41 0.32
gi|56750336|ref|YP_171037.1| ABC transporter permease protein [S... 40 0.54
gi|22002528|gb|AAM82679.1| DevC [Synechococcus sp. PCC 7942] >gi... 40 0.54
gi|48859666|ref|ZP_00313597.1| COG0577: ABC-type antimicrobial p... 40 0.54
gi|25531533|pir||AD2137 ABC transporter permease protein all2651... 40 0.54
gi|23492262|dbj|BAC17236.1| hypothetical protein [Corynebacteriu... 40 0.54
gi|11498622|ref|NP_069850.1| hypothetical protein AF1017 [Archae... 40 0.70
gi|32476756|ref|NP_869750.1| putative ABC transporter integral m... 40 0.70
gi|28900414|ref|NP_800069.1| hypothetical protein VPA0559 [Vibri... 39 0.92
gi|32472696|ref|NP_865690.1| hypothetical protein RB3732 [Rhodop... 39 0.92
gi|21227049|ref|NP_632971.1| hypothetical protein MM0947 [Methan... 39 0.92
>gi|6562677|emb|CAB62838.1| hypothetical protein L5529.07 [Leishmania
major]
Length = 1104
Score = 326 bits (835), Expect = 4e-87
Identities = 291/1143 (25%), Positives = 484/1143 (41%), Gaps = 157/1143 (13%)
Query: 351 SGYFVNSTYLTQKLADALTVHGVAPRWISIAAIXXXXXXXXXXXXXXXXXXXXXXXXXXX 410
S +N T L+Q LA + V G APRWI+ A +
Sbjct: 89 SSLLLNYTKLSQSLAKSQVVAGAAPRWIARADLTSEATYRANMHNPASARTANRVTSAN- 147
Query: 411 XXXXXXINKNGATLLIMSINSTLEKELGLGRGWTLPPLVGNQIHISAPFLRRINVKAMNN 470
I+ INS LE+ G+GRGW + ++ I I V
Sbjct: 148 ---------------ILLINSELEQRAGIGRGWPYREIGFDEAQIFFSAASYIGVSGNKG 192
Query: 471 QVVHLHMDFIDILQRLGLPATFPSFESLVDSIQLQIGFKIPKEMDVTDLIETYDLMNPGT 530
+ VHL ++ S++ IG IP ++++ P
Sbjct: 193 ERVHLSIN--------------------ASSLRNAIGIGIP----------SFNITRP-- 220
Query: 531 HIEDTLSDLFGPKGFVIDSKSGTMTFYPLVALREFYNSIRSDLSIDHDLVVMGSIDEPGG 590
+ GP F + + F+ L + E + +S+ + +++ G
Sbjct: 221 ------QKVTGPISFYLAA------FFALNNITEDSIPLFDVVSLSMAATMADAVETTAG 268
Query: 591 KYPNTIGNVGILESSYLETLIKEKLEQFNNQITSKDYKDFLTFLEVEAQEFGLSNVTDYI 650
KY + +GNV ++ D + FL L ++ G +++
Sbjct: 269 KYSSALGNVVVM-----------------------DCRQFLNVLVDQSCLLGPQSISPSE 305
Query: 651 GQYNRFVDKFESFR------KSFKLNDFSMTPVIMLENRVKVYTSSNEDMVKGMMAFTNQ 704
G Y F E F SF + D++M V+MLE R +Y ++ + + N+
Sbjct: 306 GYY--FPTTAELFNISLPSTNSFDIQDYAMMVVVMLEGRYDMYYANTKQRGAMLTEKANK 363
Query: 705 VSTLLGISYPVSFTTPLATTLQLFIYTKLSLNQIFNCXXXXXXXXXXXXXYSLLLSDVEG 764
+ +G+S+ + PL TT+Q ++ + ++LL + E
Sbjct: 364 LMEAIGLSFDGNLQFPLDTTIQTLDVFRMLMTAACVVVVIGIVVLGLILMFTLLQINAEE 423
Query: 765 KTFEYGMLRAQGMRQYALILLLLTQSLYFSIPGIVFGLFIGWCLYAIVAYFVYVQFVLLP 824
+ FE M+RAQGM + +I +L+ Q+L F++PG G+ + AI+ + F +P
Sbjct: 424 RQFELAMIRAQGMSRTQIIGILVMQTLAFTVPGTAVGVLLACATNAILERMLS-NFTKVP 482
Query: 825 IDL-TYHTTSIVSGLLMGFLMPIVANIAPIQRALSRTLRDALDVYHQVKNETLVKIEKLE 883
L T+IV G+LMG L+P+VA +P++RALS +LRDALD+Y QV NE VK +LE
Sbjct: 483 ARLGDVPITAIVIGILMGLLLPLVATYSPVKRALSSSLRDALDIYRQVYNEAHVKAIRLE 542
Query: 884 EVGXXXXXXXXXXXXXXXGFTVYYLIPLSFTFRNMGLFFGILTGILMGMLFGMSMLAQAV 943
+G GF VYYL+PLSF F NM +FF +L +L+ M+ G+ M+ V
Sbjct: 543 AMGLRMWQILLGLFLVFAGFLVYYLMPLSFIFSNMMMFFILLDFVLICMIAGLCMMTYVV 602
Query: 944 QPLLEKAVIFTLIVGPDRRSLYQLVRKNLFSHSTRNSKTATMLTISLTFIIFTGCVFRLQ 1003
Q E V++ L+ G + R L L+RKNL SH RNSK M+ +S+ ++ +G +F +
Sbjct: 603 QGPAEVFVLYLLLWGRETR-LQTLIRKNLRSHRDRNSKAYMMVLLSVACLVASGMMFSMM 661
Query: 1004 GHNIQELVRLGIGSDISVLATSIKNPIPEADIRAFLDNDIANNTNSVISDYTVITFPLDK 1063
+L L G+ ++V++ S NP+ +A + AF+ + + + +F L +
Sbjct: 662 STISSQLAELTTGAPVTVVSKSFWNPLDQASLDAFMRGE----GSLYAMQWAYTSFALRE 717
Query: 1064 VMNIRSTHLMP--LAEYPSVNVRMYGVESNFLSSAYLDFYEVTEMSKTITFPTIDNGAGK 1121
I S + + + +++VR V F+ + Y DF V +P N +
Sbjct: 718 YPQIASRTQVGSLIGNFRTIDVR--AVTEFFMDATYPDFNMVNSYRSGYEYPI--NTFHQ 773
Query: 1122 KIPDVINSLY-------VNEHRDIISEDF-NGVITPPPNIVSNGSQQYPTNSPVWKWLKN 1173
+ DVI S+Y V++ +DII F GV PN+ + SQ P
Sbjct: 774 R--DVIRSMYEDPPHCNVSKKQDIIVNGFPYGV--KIPNVTAKESQVIP----------- 818
Query: 1174 HLNNTYIYQNYTDIIFSEAFRLTCGVDTDSPFNLDIEY--KQYSNAVNHITLLAKGQSMV 1231
+I S A + G+D +S L +Y A++ + L +
Sbjct: 819 -------------MIISSAAQDMIGLDVNSAAQLRFDYFLNNSVQALSTVFYLEPRALVN 865
Query: 1232 RMXXXXXXXXXXXXXXGSPILVNDDEFYRIM----------QMVYSVTNDPSVVLPSVAP 1281
R+ ILV F ++ QM++ + V +V
Sbjct: 866 RISGFLAVSSLPILFSQGTILVPTKHFQSLLNPAVLDFDADQMIFITNHSVLEVRQAV-- 923
Query: 1282 KSKVLIKLKQGTSEIEREYVINGVRNFIKTDNIQVMDTQHLLDTTETAVTILNIFFYTVS 1341
+ ++L+ ++ ERE +N ++ T ++DT+ ++ + T++ FFY S
Sbjct: 924 ---LYVQLRSNVTKHEREIFVNALQAHTNTFYHVIVDTEATVEQLRSVQTLIMGFFYFTS 980
Query: 1342 VASIVLCFFMLWVSFSANIHENSWEFGVLRSIGLTSFQVTRIYIYEALVXXXXXXXXXXX 1401
V I LC FM+W +F +N+ N+W FGVLRS+G + Q+ R +YE+L
Sbjct: 981 VICITLCAFMMWTTFISNVQLNAWTFGVLRSLGFRTAQLMRCAVYESLCIVISAFTWGLV 1040
Query: 1402 XXXXXXXXXXXQFDLFTELPFSFEFPYFWFIGVLIMSICIAIFVSYQASKEYRTREIASV 1461
+ +PF F FPY I V M++ A+ S R + I+SV
Sbjct: 1041 VGTAVGVTMAIELCQIMVIPFHFNFPYALVIIVFGMALAAAVVGSIAPLLSLRKKPISSV 1100
Query: 1462 LKG 1464
L+G
Sbjct: 1101 LRG 1103
>gi|48859946|ref|ZP_00313874.1| COG0577: ABC-type antimicrobial
peptide transport system, permease component [Clostridium
thermocellum ATCC 27405]
Length = 375
Score = 55.5 bits (132), Expect = 1e-05
Identities = 47/193 (24%), Positives = 91/193 (46%), Gaps = 21/193 (10%)
Query: 1283 SKVLIKLKQGTSEIEREYVINGVRNFIKTDNIQVMDTQHLLDTTETAVTILNIFFYTVSV 1342
S VLIK+++G + + VI +R KTD +Q++ TQ+L+ ++ + FF ++
Sbjct: 194 SSVLIKVREGYNI---DQVITNIRR--KTDGVQIVRTQNLITGISKSLGNIITFFNVFAL 248
Query: 1343 ASIVLCFFMLWVSFSANIHENSWEFGVLRSIGLTSFQVTRIYIYEALVXXXXXXXXXXXX 1402
+ + +L V FSA+ +E EF ++R +G T ++ + I+E+L
Sbjct: 249 VLLGVTLVILTVVFSASANERKKEFAIMRILGATRKKLAAVLIWESL----YISVSGGAI 304
Query: 1403 XXXXXXXXXXQFDLFTELPFSFEFPY-----FWFIGVLIMSICIA-----IFVSYQASKE 1452
F++F + S PY W I +L+ ++ +A I +Y A K
Sbjct: 305 GTILAAIFVFPFNVF--IGDSIGLPYIQPSLLWIIAILLGTLLVAFSLGPIASAYSAVKV 362
Query: 1453 YRTREIASVLKGK 1465
R++ ++ +G+
Sbjct: 363 SRSQTYLTLREGE 375
>gi|42527026|ref|NP_972124.1| permease, putative [Treponema denticola
ATCC 35405]
gb|AAS12035.1| permease, putative [Treponema denticola ATCC 35405]
Length = 403
Score = 50.8 bits (120), Expect = 3e-04
Identities = 36/134 (26%), Positives = 69/134 (50%), Gaps = 12/134 (8%)
Query: 1257 EFYRIMQMVYSVTNDPSVVLPSVAPKSKVLIKLKQGTSEIEREYVINGVRNFIKTDNIQV 1316
E+ RIMQ + V + +++ S V++K+ E V +R K + I
Sbjct: 206 EYERIMQ--HPVAKNENLI-------SSVMVKINPRYDAGE---VAKKIREEFKGEEIYP 253
Query: 1317 MDTQHLLDTTETAVTILNIFFYTVSVASIVLCFFMLWVSFSANIHENSWEFGVLRSIGLT 1376
+ ++ ++ ++++ LNI+ Y + +L F +L VSFS+ +E EFG+LR IG T
Sbjct: 254 LISKRMMTNISSSISSLNIYVYILIAILWILSFIVLAVSFSSIFNERKEEFGMLRIIGST 313
Query: 1377 SFQVTRIYIYEALV 1390
++ + + E+L+
Sbjct: 314 KKKLFELAVLESLM 327
>gi|57168779|ref|ZP_00367910.1| ABC transporter, ATP-binding
protein, putative [Campylobacter coli RM2228]
gb|EAL56509.1| ABC transporter, ATP-binding protein, putative [Campylobacter coli
RM2228]
Length = 431
Score = 48.5 bits (114), Expect = 0.002
Identities = 30/106 (28%), Positives = 57/106 (53%), Gaps = 15/106 (14%)
Query: 756 SLLLSDVEGKTFEYGMLRAQGMRQYALILLLLTQSLYFSIPGIVFGLFIGWCLYAIVA-- 813
SL+ S++ + E G+L+ G + + LL ++L ++ VFG G L +++
Sbjct: 325 SLMSSEIHRRKKEIGLLKVLGANTFQIYLLFAGENLIIALVSAVFGFIFGIGLSELISLG 384
Query: 814 ---YFVYVQFVLLPIDLTYHTTSIVSGL--LMGFLMPI--VANIAP 852
YF+ + F+ LP+ L + +GL ++G L+PI +AN++P
Sbjct: 385 IFGYFINIAFIALPLSLVF------AGLIAILGCLLPIKNIANLSP 424
>gi|56962482|ref|YP_174208.1| antimicrobial peptide ABC transporter
permease [Bacillus clausii KSM-K16]
dbj|BAD63247.1| antimicrobial peptide ABC transporter permease [Bacillus clausii
KSM-K16]
Length = 820
Score = 46.2 bits (108), Expect = 0.008
Identities = 54/270 (20%), Positives = 110/270 (40%), Gaps = 37/270 (13%)
Query: 755 YSLLLSDVEGKTFEYGMLRAQGMRQYALILLLLTQSLYFSIPGIVFGLFIGWCLYAIVAY 814
++++ + V + E+ ++++ G Q A+ L+L + L S+ G G+ +G L +
Sbjct: 272 FNVIYTSVIERRKEFAIMKSLGYTQRAVSKLVLMEILLLSLLGTAIGVPLGVWLGDV--- 328
Query: 815 FVYVQFVLLPIDLTYHTT---SIVSGLLMGFLMPIVANIAPIQRALSRTLRDALDVYHQV 871
F+ V + D+ Y + +++G L PI ++ PI YH
Sbjct: 329 FMEVLLSVFEFDMVYTLNWQLPALMAIIIGVLFPIAFSLFPI--------------YHAG 374
Query: 872 KNETLVKIEKLEEVGXXXXXXXXXXXXXXXGFTVYYLIPLSFTFRNMGLFFGILTGILMG 931
K L+ + K+E G L+ L F F + + I+ G+++
Sbjct: 375 KTSILLTL-KMETETKHSSRRLWQRAVLGAG-----LLCLGF-FDHPAAYAAIVAGVILL 427
Query: 932 MLFGMSMLAQAVQPLLEKAVIFTLIVGPDRRSLYQLVRKNLFSHSTRNSKTATMLTISLT 991
+ L + ++PLL++ + I+ + S RN+ TA +L I ++
Sbjct: 428 FPLLLLGLNKLLRPLLKQLFQYPGIMATNHIS----------QQLNRNANTAAILAIGMS 477
Query: 992 FIIFTGCVFRLQGHNIQELVRLGIGSDISV 1021
I+ G V + + +R G D+ +
Sbjct: 478 VILLLGAVIKSAPEGFENDIRNSYGGDLKL 507
>gi|32476753|ref|NP_869747.1| probable ABC transport system integral
membrane protein [Rhodopirellula baltica SH 1]
emb|CAD77125.1| probable ABC transport system integral membrane protein [Pirellula
sp.]
Length = 935
Score = 45.4 bits (106), Expect = 0.013
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 1276 LPSVAPKSKVLIKLKQGTSEIEREYVINGVRNFIKTDN----IQVMDTQHLLDTTETAVT 1331
+ S+ + L++ ++E N + TDN + V D ++ LD T A
Sbjct: 738 IDSIQTLASDLVRRSIADDSFQQETTPNQSMDESSTDNLAKVVSVQDIRNHLDVT--ARR 795
Query: 1332 ILNIFFYTVSVASIVLCFFMLWVSFSANIHENSWEFGVLRSIGLTSFQVTRIYIYEALV 1390
+ + Y ++ ++ C +L V A++ WEFG+LRSIG TS ++R + E L+
Sbjct: 796 WIWVISYIPLISLLIACLGVLNVML-ASVRSRRWEFGILRSIGFTSSDLSRAILVEGLM 853
>gi|23111965|ref|ZP_00097518.1| COG0577: ABC-type antimicrobial
peptide transport system, permease component
[Desulfitobacterium hafniense DCB-2]
Length = 386
Score = 45.1 bits (105), Expect = 0.017
Identities = 27/143 (18%), Positives = 63/143 (43%), Gaps = 1/143 (0%)
Query: 1310 KTDNIQVMDTQHLLDTTETAVTILNIFFYTVSVASIVLCFFMLWVSFSANIHENSWEFGV 1369
K +V Q +++ + V ++F +SV ++ F++ +S + + E + + G+
Sbjct: 234 KLPGTKVAALQSTIESRDDTVAQFSLFAAVISVILLMTSGFVVAMSMISAVKERTRDIGI 293
Query: 1370 LRSIGLTSFQVTRIYIYE-ALVXXXXXXXXXXXXXXXXXXXXXXQFDLFTELPFSFEFPY 1428
LR+IG + R+++YE +L+ + ++PF
Sbjct: 294 LRAIGFRKKHILRMFLYEVSLISALGGLMGFALGMGLAMQLGSTVVQMTVQVPFQPLLAL 353
Query: 1429 FWFIGVLIMSICIAIFVSYQASK 1451
+ L++S+ I+ ++QAS+
Sbjct: 354 YSLAAALVISLIAGIYPAWQASR 376
>gi|15901836|ref|NP_346440.1| hypothetical protein SP2013
[Streptococcus pneumoniae TIGR4]
gb|AAK76080.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4]
pir||G95235 conserved hypothetical protein SP2013 [imported] - Streptococcus
pneumoniae (strain TIGR4)
Length = 326
Score = 43.9 bits (102), Expect = 0.037
Identities = 23/80 (28%), Positives = 41/80 (50%)
Query: 1310 KTDNIQVMDTQHLLDTTETAVTILNIFFYTVSVASIVLCFFMLWVSFSANIHENSWEFGV 1369
K V+ Q +LD T + ++ +S +IV+ M+ + NI + S E GV
Sbjct: 170 KNKKYTVLSQQRVLDIVITFIRVIQGLLIVLSSQAIVVAAVMIGIIIYINIMQRSKEIGV 229
Query: 1370 LRSIGLTSFQVTRIYIYEAL 1389
++++G + V I+IYEA+
Sbjct: 230 MKAVGYQNRDVKGIFIYEAI 249
>gi|20090527|ref|NP_616602.1| hypothetical protein MA1674
[Methanosarcina acetivorans C2A]
gb|AAM05082.1| conserved hypothetical protein [Methanosarcina acetivorans str.
C2A]
Length = 389
Score = 43.5 bits (101), Expect = 0.049
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Query: 758 LLSDVEGKTFEYGMLRAQGMRQYALILLLLTQSLYFSIPGIVFGLFIGWCL-YAIVAYFV 816
L++ V +T E G+L+A G Q +++++ L QSL G+V G+ +G+ + A+ Y +
Sbjct: 274 LITIVAQRTREIGILKAMGASQKSIMVVFLFQSLVLGAIGLVLGIILGYIVTIALQNYEI 333
Query: 817 YV----QFVLLPIDLTYHTTSIVSGLLMGFLMPIVANIAPIQRA 856
V F L + L + V F++ I++ I P ++A
Sbjct: 334 EVPQEMYFGLQTLPLEVKPLNFVYAAFFAFIVNIISGIYPARKA 377
>gi|18314231|ref|NP_560898.1| hypothetical protein PAE3663
[Pyrobaculum aerophilum str. IM2]
gb|AAL65080.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
Length = 404
Score = 43.5 bits (101), Expect = 0.049
Identities = 23/92 (25%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 1301 VINGVRNFIKTD--NIQVMDTQHLLDTTETAVTILNIFFYTVSVASIVLCFFMLWVSFSA 1358
+I+ V N ++ + N+ V+ Q +L T + +T +F ++ S V+ L+ + S
Sbjct: 219 LIDSVSNDVRANFPNVDVISPQAILQTINSYLTSFQLFLGLIAGVSTVITALWLYDTMSI 278
Query: 1359 NIHENSWEFGVLRSIGLTSFQVTRIYIYEALV 1390
++ + + E G+LR++G V +++ EAL+
Sbjct: 279 SVVQRTKEIGILRALGFKKRHVMLMFLTEALI 310
>gi|57238672|ref|YP_179803.1| ABC transporter, permease protein
[Campylobacter jejuni RM1221]
gb|AAW36255.1| ABC transporter, permease protein [Campylobacter jejuni RM1221]
Length = 429
Score = 43.1 bits (100), Expect = 0.064
Identities = 30/108 (27%), Positives = 54/108 (49%), Gaps = 14/108 (12%)
Query: 756 SLLLSDVEGKTFEYGMLRAQGMRQYALILLLLTQSLYFSIPGIVFGLFIGWCLYAIVA-- 813
SL+ S++ + E G+L+ G + + L+ ++L ++ +FG G L I++
Sbjct: 323 SLMSSEIHRRKKEIGLLKVLGANTFQIYLIFAGENLIVALFAALFGFIFGTALSQIISLS 382
Query: 814 ---YFVYVQFVLLPIDLTYHTTSIVSGL--LMGFLMPIVANIAPIQRA 856
YF+ + F+ LP+ I +GL L+G L+PI NI + A
Sbjct: 383 IFGYFIDIAFIALPLSF------IFAGLIALLGCLLPI-KNITQLSAA 423
>gi|15603689|ref|NP_246763.1| hypothetical protein PM1824 [Pasteurella
multocida subsp. multocida str. Pm70]
gb|AAK03908.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
Length = 410
Score = 43.1 bits (100), Expect = 0.064
Identities = 23/82 (28%), Positives = 38/82 (46%)
Query: 1309 IKTDNIQVMDTQHLLDTTETAVTILNIFFYTVSVASIVLCFFMLWVSFSANIHENSWEFG 1368
++ NI ++ + +LN+ F ++V SI+ C L +F ANI E
Sbjct: 253 LRAKNIDTRTEAKAIENVKAIDAVLNVIFLVIAVTSIMGCILSLVGAFLANIDRKRKEIA 312
Query: 1369 VLRSIGLTSFQVTRIYIYEALV 1390
VLR +G S V I +A++
Sbjct: 313 VLRLLGFQSIGVMGFLILQAVI 334
>gi|15903868|ref|NP_359418.1| hypothetical protein spr1826
[Streptococcus pneumoniae R6]
gb|AAL00629.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
pir||H98099 conserved hypothetical protein spr1826 [imported] - Streptococcus
pneumoniae (strain R6)
Length = 326
Score = 43.1 bits (100), Expect = 0.064
Identities = 23/80 (28%), Positives = 41/80 (50%)
Query: 1310 KTDNIQVMDTQHLLDTTETAVTILNIFFYTVSVASIVLCFFMLWVSFSANIHENSWEFGV 1369
K V+ Q +LD T + ++ +S +IV+ M+ + NI + S E GV
Sbjct: 170 KNKKYTVLSQQRVLDIVITFIRVIQGLLIVLSSQAIVVAAVMIGIIIYINIMQRSKEIGV 229
Query: 1370 LRSIGLTSFQVTRIYIYEAL 1389
++++G + V I+IYEA+
Sbjct: 230 MKAVGYQNRGVKGIFIYEAI 249
>gi|10176298|dbj|BAB07393.1| ABC transporter (ATP-binding protein)
[Bacillus halodurans C-125]
ref|NP_244541.1| ABC transporter (ATP-binding protein) [Bacillus halodurans C-125]
pir||B84109 ABC transporter (ATP-binding protein) BH3674 [imported] - Bacillus
halodurans (strain C-125)
Length = 413
Score = 42.7 bits (99), Expect = 0.083
Identities = 25/100 (25%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 756 SLLLSDVEGKTFEYGMLRAQGMRQYALILLLLTQSLYFSIPGIVFGLFIGWCLYAIVAYF 815
+++L V +T E G+ +A G +++ ++L LT+++ + G G+ +G +++ F
Sbjct: 308 NIMLVSVTERTREIGIKKALGAKRHVILLQFLTEAVVLTSLGGALGILLGLGGAKVISSF 367
Query: 816 VYVQFVL-LPIDLTYHTTSIVSGLLMGFLMPIVA-NIAPI 853
+ + F++ LP + S++ G++ GFL A N+ P+
Sbjct: 368 IGMPFIISLPAVIGGLLFSMIVGIIFGFLPSFKASNLQPV 407
>gi|48841198|ref|ZP_00298124.1| COG0577: ABC-type antimicrobial
peptide transport system, permease component
[Methanosarcina barkeri str. fusaro]
Length = 403
Score = 42.4 bits (98), Expect = 0.11
Identities = 30/130 (23%), Positives = 65/130 (49%), Gaps = 17/130 (13%)
Query: 1265 VYSVTNDPSVVLPSVAPKSKVLIKLKQGTSEIEREYVINGVRNFIKTDNIQVMDTQHL-- 1322
V+++ NDP+ V + KV +L + ERE R +I + +V++ +
Sbjct: 218 VFAMANDPATVQET---SDKVDERLARNFGISERELEDKDSRPYIIVNQAEVLEQTDMMA 274
Query: 1323 --LDTTETAVTILNIFFYTVSVASIVLCFFMLWVSFSANIHENSWEFGVLRSIGLTSFQV 1380
L + TAV ++++ ++ + +I+L ++ E + E GVL+S+G T F +
Sbjct: 275 AALSSFLTAVALISLLVGSIGIMNIML----------VSVTERTREIGVLKSLGFTGFDI 324
Query: 1381 TRIYIYEALV 1390
+++ E+++
Sbjct: 325 LFLFMIESIL 334
>gi|6969077|emb|CAB73648.1| possible ABC transport system permease
protein [Campylobacter jejuni subsp. jejuni NCTC 11168]
pir||B81263 probable ABC transport system permease protein Cj1661 [imported] -
Campylobacter jejuni (strain NCTC 11168)
ref|NP_282788.1| possible ABC transport system permease protein [Campylobacter
jejuni subsp. jejuni NCTC 11168]
Length = 430
Score = 42.4 bits (98), Expect = 0.11
Identities = 30/108 (27%), Positives = 54/108 (49%), Gaps = 14/108 (12%)
Query: 756 SLLLSDVEGKTFEYGMLRAQGMRQYALILLLLTQSLYFSIPGIVFGLFIGWCLYAIVA-- 813
SL+ S++ + E G+L+ G + + L+ +++L ++ + G G L I++
Sbjct: 324 SLMSSEIHRRKKEIGLLKVLGANTFQIYLIFASENLIVALFAALLGFIFGTALSQIISLS 383
Query: 814 ---YFVYVQFVLLPIDLTYHTTSIVSGL--LMGFLMPIVANIAPIQRA 856
YF+ + FV LP+ I +GL L+G L+PI NI + A
Sbjct: 384 IFGYFIDIAFVALPLSF------IFAGLIALLGCLLPI-KNITQLSAA 424
>gi|22298186|ref|NP_681433.1| devC-like ABC transporter permease
protein [Thermosynechococcus elongatus BP-1]
dbj|BAC08195.1| devC-like ABC transporter permease protein [Thermosynechococcus
elongatus BP-1]
Length = 384
Score = 42.4 bits (98), Expect = 0.11
Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 5/136 (3%)
Query: 700 AFTNQVSTLLGISYPVSFTTPLATTLQLFIYTKLSLNQIFNCXXXXXXXXXXXXXYSLLL 759
A +++ LG V A + + S+ IF+ Y +L
Sbjct: 226 ALARRMNAALGNDVLVMTKEEFAAFERNYWQKSTSIGFIFSLGALMGFIVGSVIVYQILY 285
Query: 760 SDVEGKTFEYGMLRAQGMRQYALILLLLTQSLYFSIPGIVFGLFIGWCLYAIVAYFVYVQ 819
+DV EY L+A G R +++ +SL S G V G + + LY ++A
Sbjct: 286 TDVTDHLAEYATLKAMGYRDVFFYGVVMQESLILSCMGYVPGFIVSFLLYIVIA-----N 340
Query: 820 FVLLPIDLTYHTTSIV 835
LP+ +T S+V
Sbjct: 341 ATSLPVGMTVERASLV 356
>gi|15602315|ref|NP_245387.1| hypothetical protein PM0450
[Pasteurella multocida subsp. multocida str. Pm70]
gb|AAK02534.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
Length = 440
Score = 42.0 bits (97), Expect = 0.14
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 756 SLLLSDVEGKTFEYGMLRAQGMRQYALILLLLTQSLYFSIPGIVFGLFIGWCLYAIVAYF 815
SL+ S + ++ E G+++A G Q+ ++LL ++ ++ G + G GW L A F
Sbjct: 333 SLMTSTIIERSKEIGLMKALGAYQWQIVLLFYCEATISALFGGILGCLAGWGL----AKF 388
Query: 816 VYVQFVLLPIDLTYHTTSIVSGLLMGFLMPIVANIAPIQR 855
+ + LP+D T+ V L++ L+ ++ P R
Sbjct: 389 IGITLFGLPLDFTWIVVPCV--LVLSILIALIGTWFPAHR 426
>gi|21228952|ref|NP_634874.1| ABC transporter, permease protein
[Methanosarcina mazei Go1]
gb|AAM32546.1| ABC transporter, permease protein [Methanosarcina mazei Goe1]
Length = 405
Score = 42.0 bits (97), Expect = 0.14
Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 5/104 (4%)
Query: 758 LLSDVEGKTFEYGMLRAQGMRQYALILLLLTQSLYFSIPGIVFGLFIGW-CLYAIVAYFV 816
L++ V +T E G+L+A G Q +++++ + QSL G+V G +G+ + A+ Y +
Sbjct: 290 LITIVAQRTREIGILKAMGASQKSIMVIFIFQSLVLGAIGLVLGTVLGYITIVALQNYKI 349
Query: 817 YV----QFVLLPIDLTYHTTSIVSGLLMGFLMPIVANIAPIQRA 856
V F L + L + V F++ I++ I P ++A
Sbjct: 350 EVPQEMYFGLQTLPLEVEALNFVYAAFFAFIVNILSGIYPARKA 393
>gi|7672272|emb|CAB89462.1| putative ABC transporter integral membrane
protein [Streptomyces coelicolor A3(2)]
ref|NP_627309.1| putative ABC transporter integral membrane protein [Streptomyces
coelicolor A3(2)]
Length = 843
Score = 42.0 bits (97), Expect = 0.14
Identities = 39/152 (25%), Positives = 74/152 (48%), Gaps = 15/152 (9%)
Query: 1250 PILVNDDE--------FYRIMQMVYSVTNDPSVVLPSVAPKS--KVLIKLKQGTSEIERE 1299
P+ +DDE Y+ + + V D VV A S ++ +K+ G S +
Sbjct: 622 PVTFDDDEKATLTVGAVYKDSEFLSPVLVDRKVVDRHEAKPSIRQIFVKVDGGQSAANEK 681
Query: 1300 YVINGVRNFIKTDNIQVMDTQHLLDTTETAV-TILNIFFYTVSVASIVLCFFMLWVSFSA 1358
+++ + + I VMD Q + D A+ T+LN+ + +++A I+ ++ + +
Sbjct: 682 VLVDALGD---NPAITVMDRQDIRDEFGGAINTLLNVMYGLLAMALIIAVLGVV-NTLAM 737
Query: 1359 NIHENSWEFGVLRSIGLTSFQVTRIYIYEALV 1390
++ E E G+LR+IGL +V R+ EA+V
Sbjct: 738 SVFERQQEIGMLRAIGLDRRRVKRMVRLEAVV 769
>gi|28897074|ref|NP_796679.1| hypothetical protein VP0300 [Vibrio
parahaemolyticus RIMD 2210633]
dbj|BAC58563.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
2210633]
Length = 419
Score = 41.6 bits (96), Expect = 0.19
Identities = 34/114 (29%), Positives = 56/114 (48%), Gaps = 5/114 (4%)
Query: 756 SLLLSDVEGKTFEYGMLRAQGMRQYALILLLLTQSLYFSIPGIVFGLFIGWCLYAIVAYF 815
S LL+ ++ + E +LRA G R + LL++++ + GIV G+ LYAI+A
Sbjct: 307 SSLLTSLQERRREMAILRAMGARPRHVFSLLISEASLLTAAGIVTGVL---GLYAILALL 363
Query: 816 VYVQFVLLPIDLTYHTTSIVSGLLMGFLM--PIVANIAPIQRALSRTLRDALDV 867
+ I+LT T S +L+ F+ IV P RA ++L D + +
Sbjct: 364 QPLIQQHYGINLTLSTLSAYEWMLLSFVQCAGIVIGFIPAFRAYRQSLSDGMTI 417
>gi|48838240|ref|ZP_00295187.1| COG4591: ABC-type transport system,
involved in lipoprotein release, permease component
[Methanosarcina barkeri str. fusaro]
Length = 398
Score = 41.6 bits (96), Expect = 0.19
Identities = 27/104 (25%), Positives = 52/104 (49%), Gaps = 5/104 (4%)
Query: 758 LLSDVEGKTFEYGMLRAQGMRQYALILLLLTQSLYFSIPGIVFGLFIGW-CLYAIVAYFV 816
L++ V +T E G+L+A G Q +++++ L QS+ G+V G +G+ + +Y +
Sbjct: 283 LITIVAQRTREIGILKAMGASQKSIMIVFLFQSVILGAMGLVLGTILGYIATITLQSYKI 342
Query: 817 YV----QFVLLPIDLTYHTTSIVSGLLMGFLMPIVANIAPIQRA 856
V F L + L + V F++ I++ I P ++A
Sbjct: 343 AVPQEMYFGLQTLPLEVEPLNFVYAAFFAFIINIISGIYPARKA 386
>gi|23126910|ref|ZP_00108791.1| COG0577: ABC-type antimicrobial
peptide transport system, permease component [Nostoc
punctiforme PCC 73102]
Length = 390
Score = 41.6 bits (96), Expect = 0.19
Identities = 37/155 (23%), Positives = 66/155 (41%), Gaps = 7/155 (4%)
Query: 701 FTNQVSTLLGISYPVSFTTPLATTLQLFIYTKLSLNQIFNCXXXXXXXXXXXXXYSLLLS 760
FT ++ T L V L + + T ++ IFN Y +L +
Sbjct: 233 FTGKLKTFLPKDVKVLSKEQLIAFEKNYWQTSTAIGFIFNLGVGLGIVVGIVVVYQILYT 292
Query: 761 DVEGKTFEYGMLRAQGMRQYALILLLLTQSLYFSIPGIVFGLFIGWCLYAIVAYFVYVQF 820
+V +Y L+A G +Q L+ ++L Q+L +I G + G I +I+ Y +
Sbjct: 293 NVSEHLPQYATLKAIGYQQRYLLSIVLQQALLIAILGYIPGFLI-----SIIQYEFAKKA 347
Query: 821 VLLPIDLTYHTTSIVSGLLMGFLMPIVANIAPIQR 855
LLPI +T + V L+ +M V+ +++
Sbjct: 348 TLLPIVMTIDRAAFV--LIATVIMCFVSGATAVRK 380
>gi|42522660|ref|NP_968040.1| ABC-type antimicrobial peptide
transporter, permease component [Bdellovibrio
bacteriovorus HD100]
emb|CAE79033.1| ABC-type antimicrobial peptide transporter, permease component
[Bdellovibrio bacteriovorus HD100]
Length = 421
Score = 41.2 bits (95), Expect = 0.24
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 15/107 (14%)
Query: 768 EYGMLRAQGMRQYALILLLLTQSLYFSIPGIVFGLFIGWCLYAIVAYFVYVQFVLLPI-- 825
E +LRA G + ++ LL+ +S + G+ GL W L A++ ++ +F L +
Sbjct: 321 EMAILRAVGAKSNQILGLLVFESALLTAVGVALGLVTSWGLIAVLKPWIETEFGLYLVGP 380
Query: 826 -----DLTYHTTSIVSGLLMGFLMPIVANIAPIQRALSRTLRDALDV 867
+L Y ++V G L+G + P RA L+D L V
Sbjct: 381 WVTRYELMYLIITLVGGTLIGLI--------PALRAQKLALKDGLSV 419
>gi|19703916|ref|NP_603478.1| Lipoprotein releasing system
transmembrane protein lolE [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gb|AAL94777.1| Lipoprotein releasing system transmembrane protein lolE
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
Length = 389
Score = 41.2 bits (95), Expect = 0.24
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 12/103 (11%)
Query: 762 VEGKTFEYGMLRAQGMRQYALILLLLTQSLYFSIPGIVFGLFIGWCL------YAI--VA 813
V KT + G++RA G + ++L+ L Q + I GI+ G+ + L YA+ V+
Sbjct: 279 VREKTKDIGIMRAMGFSKKNIMLIFLIQGIILGIIGIILGIIVSLILLYYIKNYAVDLVS 338
Query: 814 YFVYVQFVLLPIDLTYHTTSIVSGLLMGFLMPIVANIAPIQRA 856
Y++ + PI+++ +I+ G F++ ++++I P RA
Sbjct: 339 NIYYLKDI--PIEISLKEIAIIVG--ANFIVILISSIFPAYRA 377
>gi|18313238|ref|NP_559905.1| hypothetical protein PAE2288
[Pyrobaculum aerophilum str. IM2]
gb|AAL64087.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
Length = 379
Score = 41.2 bits (95), Expect = 0.24
Identities = 39/212 (18%), Positives = 90/212 (42%), Gaps = 24/212 (11%)
Query: 649 YIGQY--NRFVDKFESFRKSFKLNDFSMTPVIMLENRVKV---YTSSNEDMVKGMMAFTN 703
++G + N V + ++S F T +I +N+ +V YTS E + +T
Sbjct: 173 FVGAFRLNLVVVPLDWLQRSLNTGPFVNTVLITAKNKAEVKALYTSLKETYTDAQV-YTQ 231
Query: 704 QVSTLLGISYPVSFTTPLATTLQLFIYTKLSLNQIFNCXXXXXXXXXXXXXYSLLLSDVE 763
+ + L T ++F +LN +F+ ++++ V
Sbjct: 232 E--------------SLLETVTKVFN----ALNVVFSVISSAALATAAITTFAVMSITVR 273
Query: 764 GKTFEYGMLRAQGMRQYALILLLLTQSLYFSIPGIVFGLFIGWCLYAIVAYFVYVQFVLL 823
+ E+G+L+A G+ ++L +L + + ++ + G+ IG+ +V + V
Sbjct: 274 ERLREFGLLKAMGIPSRDIVLSVLAEVVIIALLAGIGGVAIGFYGANVVKQLLINMGVNF 333
Query: 824 PIDLTYHTTSIVSGLLMGFLMPIVANIAPIQR 855
+ +T+ T V+G + ++ ++PI++
Sbjct: 334 DVAITFRYTYAVTGFATSLGVAVIGALSPIRK 365
>gi|34762631|ref|ZP_00143624.1| Lipoprotein releasing system
transmembrane protein lolE [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
gb|EAA24787.1| Lipoprotein releasing system transmembrane protein lolE
[Fusobacterium nucleatum subsp. vincentii ATCC 49256]
Length = 389
Score = 41.2 bits (95), Expect = 0.24
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 12/103 (11%)
Query: 762 VEGKTFEYGMLRAQGMRQYALILLLLTQSLYFSIPGIVFGLFIGWCL------YAI--VA 813
V KT + G++RA G + ++L+ L Q + I GI+ G+ + L YA+ V+
Sbjct: 279 VREKTKDIGIMRAMGFSKKNIMLIFLIQGIILGIIGIILGIIVSLILLYYIKNYAVDLVS 338
Query: 814 YFVYVQFVLLPIDLTYHTTSIVSGLLMGFLMPIVANIAPIQRA 856
Y++ + PI+++ +I+ G F++ ++++I P RA
Sbjct: 339 NIYYLKDI--PIEISLKEIAIIVG--ANFIVILISSIFPAYRA 377
>gi|23129026|ref|ZP_00110860.1| COG0577: ABC-type antimicrobial
peptide transport system, permease component [Nostoc
punctiforme PCC 73102]
Length = 386
Score = 41.2 bits (95), Expect = 0.24
Identities = 31/135 (22%), Positives = 57/135 (41%), Gaps = 7/135 (5%)
Query: 731 TKLSLNQIFNCXXXXXXXXXXXXXYSLLLSDVEGKTFEYGMLRAQGMRQYALILLLLTQS 790
T S+ IF Y +L SD+ EY L+A G + L ++L ++
Sbjct: 259 TSTSIGIIFGTGAIMAFIVGTVIVYQVLYSDITEHLSEYATLKAIGYSNFRLSKVVLQEA 318
Query: 791 LYFSIPGIVFGLFIGWCLYAIVAYFVYVQFVLLPIDLTYHTTSIVSGLLMGFLMPIVANI 850
+ + G + G FI LY I LP++++Y S V ++ +M ++ +
Sbjct: 319 VILAFLGFIPGFFISSSLYIITRLATG-----LPMEMSYGRASFV--FILANIMCSISAL 371
Query: 851 APIQRALSRTLRDAL 865
+++ L+ D L
Sbjct: 372 LSLRQVLTTDPADVL 386
>gi|15898611|ref|NP_343216.1| hypothetical protein SSO1810 [Sulfolobus
solfataricus P2]
gb|AAK42006.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
pir||G90343 conserved hypothetical protein [imported] - Sulfolobus solfataricus
Length = 395
Score = 40.8 bits (94), Expect = 0.32
Identities = 32/140 (22%), Positives = 67/140 (47%), Gaps = 9/140 (6%)
Query: 1259 YRIMQMVYSVT-NDPSVVLPSVAPKSKVLIK-------LKQGTSEIEREYVINGVRNFIK 1310
Y I++ SV D S V+ ++K LI + QG+S I I + N+I
Sbjct: 173 YGILRPTQSVVIGDTSDVIFIPLGEAKALINPPGYFLVVLQGSS-ISEVNTITTLLNYIY 231
Query: 1311 TDNIQVMDTQHLLDTTETAVTILNIFFYTVSVASIVLCFFMLWVSFSANIHENSWEFGVL 1370
+++ V Q + + + +T + + S+ + + A +++ + E G++
Sbjct: 232 GNSLTVTTIQQAISSVQVIITSFSFLVILIGSISLFVGAVGIMGITLARVYQRTREIGIM 291
Query: 1371 RSIGLTSFQVTRIYIYEALV 1390
+++GLT+ QV +++ EAL+
Sbjct: 292 KTVGLTTRQVLLVFLLEALI 311
>gi|20091320|ref|NP_617395.1| hypothetical protein MA2489
[Methanosarcina acetivorans C2A]
gb|AAM05875.1| conserved hypothetical protein [Methanosarcina acetivorans str.
C2A]
Length = 389
Score = 40.8 bits (94), Expect = 0.32
Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 758 LLSDVEGKTFEYGMLRAQGMRQYALILLLLTQSLYFSIPGIVFGLFIGWCL-YAIVAYFV 816
L++ V +T E G+L+A G Q +++ + L QS+ G++ G +G+ + + +Y +
Sbjct: 274 LITIVAQRTREIGILKAMGASQKSIMFVFLFQSMILGAIGLILGTILGYIVTVGLQSYEI 333
Query: 817 YV----QFVLLPIDLTYHTTSIVSGLLMGFLMPIVANIAPIQRA 856
V F L + L + V F++ I++ I P ++A
Sbjct: 334 EVPQEMYFGLQTLPLEIEPLNFVYAAFFAFIINIISGIYPARKA 377
>gi|38234455|ref|NP_940222.1| Putative ABC transport system permease
protein [Corynebacterium diphtheriae NCTC 13129]
emb|CAE50414.1| Putative ABC transport system permease protein [Corynebacterium
diphtheriae]
Length = 854
Score = 40.8 bits (94), Expect = 0.32
Identities = 25/106 (23%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 1285 VLIKLKQGTSEIEREYVINGVRNFIKTDNIQVMDTQHLLDTTETAVTILNIFFYTVSVAS 1344
+ +K G+SE +Y+ + +F K D + + L T + A++ +N F + +
Sbjct: 217 IFVKKADGSSEDVVQYLKDKYPDF-KVDTGASL-AEELTKTIKKALSFVNYFLVAFGLIA 274
Query: 1345 IVLCFFMLWVSFSANIHENSWEFGVLRSIGLTSFQVTRIYIYEALV 1390
+++ F++ +FS + + EF ++R++G++ Q+TR + EA++
Sbjct: 275 LLVGTFIIANTFSMIVAQRLKEFALMRALGVSRKQLTRSVVLEAVI 320
>gi|15893817|ref|NP_347166.1| Predicted permease, domain duplication
[Clostridium acetobutylicum ATCC 824]
gb|AAK78506.1| Predicted permease, domain duplication [Clostridium acetobutylicum
ATCC 824]
pir||G96964 probable permease, domain duplication [imported] - Clostridium
acetobutylicum
Length = 863
Score = 40.8 bits (94), Expect = 0.32
Identities = 18/62 (29%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 1332 ILNIFFYTVSVASIVLCF----FMLWVSFSANIHENSWEFGVLRSIGLTSFQVTRIYIYE 1387
+ N F Y+V +V+ F+++ SF+ +++E + +FG+L S+G T+ Q+ R ++E
Sbjct: 268 VFNAFLYSVGGIVVVIIMIGSIFLIYNSFNISLNERTHQFGILSSVGATAKQLRRSVLFE 327
Query: 1388 AL 1389
+
Sbjct: 328 GI 329
>gi|19704684|ref|NP_604246.1| ABC transporter permease protein
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
gb|AAL95545.1| ABC transporter permease protein [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 401
Score = 40.8 bits (94), Expect = 0.32
Identities = 32/163 (19%), Positives = 68/163 (41%), Gaps = 4/163 (2%)
Query: 1283 SKVLIKLKQGTSEIEREYVINGVRNFIKTDNIQVMDTQHLLDTTETAVTILNIFFYTVSV 1342
S V+IK K G ++ + + + + + I M ++ +++ + + +L+ +
Sbjct: 218 SSVMIKAKPGVDSVK---LASKISKELSKEGIFAMFSKKFVNSISSNLKVLSTSILVLVG 274
Query: 1343 ASIVLCFFMLWVSFSANIHENSWEFGVLRSIGLTSFQVTRIYIYEALVXXXXXXXXXXXX 1402
A +L +L +SF+A +E E VLR +G + + I + EA++
Sbjct: 275 AIWILSIVVLSISFTAVFNERKKEMAVLRVLGASKKMLREIILKEAVILSLWGAGIGSFL 334
Query: 1403 XXXXXXXXXXQFDLFTELPFSFEFPYFWFIGVLIMSICIAIFV 1445
+PF F +IG+ I+S + +F+
Sbjct: 335 GVILSIIQLPLLASKFSMPF-LSPSLFQYIGIFILSFVLGVFI 376
>gi|46106219|ref|ZP_00186780.2| COG0577: ABC-type antimicrobial
peptide transport system, permease component [Rubrobacter
xylanophilus DSM 9941]
Length = 855
Score = 40.8 bits (94), Expect = 0.32
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 1335 IFFYTVSVASIVLCFFMLWVSFSANIHENSWEFGVLRSIGLTSFQVTRIYIYEALV 1390
+FFY + S+ + F + + S ++ E + E G+LR+IG T QV R+ + E ++
Sbjct: 726 VFFYAIMGVSVAVSAFGVVNTLSMSVFERTREIGILRAIGATRLQVGRLVVEEGVI 781
>gi|56750336|ref|YP_171037.1| ABC transporter permease protein
[Synechococcus elongatus PCC 6301]
dbj|BAD78517.1| ABC transporter permease protein [Synechococcus elongatus PCC 6301]
Length = 392
Score = 40.0 bits (92), Expect = 0.54
Identities = 24/81 (29%), Positives = 39/81 (47%), Gaps = 5/81 (6%)
Query: 755 YSLLLSDVEGKTFEYGMLRAQGMRQYALILLLLTQSLYFSIPGIVFGLFIGWCLYAIVAY 814
Y +L SDV EY L+A G L+ ++ ++L + G + G+ + LYAI
Sbjct: 289 YQILYSDVSDHLAEYATLKAMGYSDRYLLWVVFQEALILAALGYIPGVILSTGLYAITR- 347
Query: 815 FVYVQFVLLPIDLTYHTTSIV 835
++PI +T+ SIV
Sbjct: 348 ----SATMIPIGMTFDRASIV 364
>gi|22002528|gb|AAM82679.1| DevC [Synechococcus sp. PCC 7942]
ref|ZP_00202135.1| COG0577: ABC-type antimicrobial peptide transport system, permease
component [Synechococcus elongatus PCC 7942]
Length = 392
Score = 40.0 bits (92), Expect = 0.54
Identities = 24/81 (29%), Positives = 39/81 (47%), Gaps = 5/81 (6%)
Query: 755 YSLLLSDVEGKTFEYGMLRAQGMRQYALILLLLTQSLYFSIPGIVFGLFIGWCLYAIVAY 814
Y +L SDV EY L+A G L+ ++ ++L + G + G+ + LYAI
Sbjct: 289 YQILYSDVSDHLAEYATLKAMGYSDRYLLWVVFQEALILAALGYIPGVILSTGLYAITR- 347
Query: 815 FVYVQFVLLPIDLTYHTTSIV 835
++PI +T+ SIV
Sbjct: 348 ----SATMIPIGMTFDRASIV 364
>gi|48859666|ref|ZP_00313597.1| COG0577: ABC-type antimicrobial
peptide transport system, permease component
[Clostridium thermocellum ATCC 27405]
Length = 868
Score = 40.0 bits (92), Expect = 0.54
Identities = 32/136 (23%), Positives = 65/136 (47%), Gaps = 8/136 (5%)
Query: 755 YSLLLSDVEGKTFEYGMLRAQGMRQYALILLLLTQSLYFSIPGIVFGLFIGWCLYAIVAY 814
Y+ V +T ++G+L + G + ++ +L ++ + S+ GI FG+ G +
Sbjct: 295 YNAFSISVNERTKQFGILASIGATRRQMLKSVLFEACFLSLIGIPFGILAGVLGIGVTLK 354
Query: 815 F---VYVQFVLLP----IDLTYHTTSIVSGLLMGFLMPIVANIAPIQRALSRTLRDALDV 867
++V F+ + +DL ++V +++GF +++ P +RAL + DA+
Sbjct: 355 LTEDLFVSFLQVDNGVVLDLHVSLGAVVVAIVVGFATVLISAYIPAKRALRISPIDAIRQ 414
Query: 868 YHQVKNET-LVKIEKL 882
+K E VK KL
Sbjct: 415 TQDIKIEAKKVKTSKL 430
>gi|25531533|pir||AD2137 ABC transporter permease protein all2651
[imported] - Nostoc sp. (strain PCC 7120)
dbj|BAB74350.1| ABC transporter permease protein [Nostoc sp. PCC 7120]
ref|NP_486691.1| ABC transporter permease protein [Nostoc sp. PCC 7120]
Length = 393
Score = 40.0 bits (92), Expect = 0.54
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 10/115 (8%)
Query: 755 YSLLLSDVEGKTFEYGMLRAQGMRQYALILLLLTQSLYFSIPGIVFGLFIGWCLYAIVAY 814
Y +L +DV EY L+A G L+L++ ++ ++ G + G FI +Y +A
Sbjct: 289 YQVLYADVRDHLAEYATLKAMGYSDIYLLLVIFQEAAMLTVLGFIPGFFISVGMYHFLAD 348
Query: 815 FVYVQFVLLPIDLTYHTTSIVSGLLMGFLMPIVANIAPIQRALSRTLRDALDVYH 869
++ + P DL V L++ F+M + + + S D DV+H
Sbjct: 349 LTRLELAMTP-DLA------VMVLILTFIMCLASAAIASNKLRS---ADPADVFH 393
>gi|23492262|dbj|BAC17236.1| hypothetical protein [Corynebacterium
efficiens YS-314]
ref|NP_737036.1| hypothetical protein CE0426 [Corynebacterium efficiens YS-314]
Length = 880
Score = 40.0 bits (92), Expect = 0.54
Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 1280 APKSKVLIKLKQGTSEIEREYVINGVRNFIKTDNIQVMDTQHLLDTTETAVTILNIFFYT 1339
A S+++I + G +E I F+ T + + T T + +
Sbjct: 224 ANASQIVIAVHDGVDPLEVRNQIGRTYRFL-TPLLPEQIIERTTGDTATQLEFITYILIA 282
Query: 1340 VSVASIVLCFFMLWVSFSANIHENSWEFGVLRSIGLTSFQVTRIYIYEALV 1390
+V ++++ F++ +F+ + + + EF +LRSIG++SFQ+ + EA+V
Sbjct: 283 FAVIALIVGAFIIANTFAMIVGQRTSEFALLRSIGVSSFQIGFSVVMEAVV 333
>gi|11498622|ref|NP_069850.1| hypothetical protein AF1017
[Archaeoglobus fulgidus DSM 4304]
gb|AAB90225.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
pir||A69377 conserved hypothetical protein AF1017 - Archaeoglobus fulgidus
Length = 377
Score = 39.7 bits (91), Expect = 0.70
Identities = 30/142 (21%), Positives = 68/142 (47%), Gaps = 17/142 (11%)
Query: 1249 SPILVNDDEFYRIMQMVYSVTNDPSVVLPSVAPKSKVLIKLKQGTSEIEREYVINGVRNF 1308
S I+++ ++F ++ + Y++ + K++ L K+ EIE + IN
Sbjct: 179 SAIILSPEDFEKVSDVGYTM----------LIVKAESLEKVDDVKKEIEEK--INS---- 222
Query: 1309 IKTDNIQVMDTQHLLDTTETAVTILNIFFYTVSVASIVLCFFMLWVSFSANIHENSWEFG 1368
+ + + V D + +L+ A + +N F ++ S+++ + + E + E G
Sbjct: 223 -RDEKVVVFDLKIILERINEAFSQINTFLMAIASVSLLVAGVSILNIMLMSTIERTKEIG 281
Query: 1369 VLRSIGLTSFQVTRIYIYEALV 1390
++R+IG + RI++ EAL+
Sbjct: 282 IMRAIGAYRSTILRIFLMEALI 303
>gi|32476756|ref|NP_869750.1| putative ABC transporter integral
membrane protein [Rhodopirellula baltica SH 1]
emb|CAD77128.1| putative ABC transporter integral membrane protein [Pirellula sp.]
Length = 970
Score = 39.7 bits (91), Expect = 0.70
Identities = 23/102 (22%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Query: 758 LLSDVEGKTFEYGMLRAQGMRQYALILLLLTQSLYFSIPG----IVFGLFIGWCLYAIVA 813
+++ V +T+E+G++R+ G+ + L+ L++ +++ ++ ++FGL GWC V
Sbjct: 854 VIASVRSRTWEFGIMRSIGVTRGQLVRLVIAETILIAVGACVLSLIFGLIAGWC---GVG 910
Query: 814 YFVYVQFVLLPIDLTYHTTSIVSGLLMGFLMPIVANIAPIQR 855
YV + P + + G M + ++A + P+ R
Sbjct: 911 MAQYVGWFAGPPNFIIPWAHLSIGFAMTIGLCLLAGLWPVVR 952
>gi|28900414|ref|NP_800069.1| hypothetical protein VPA0559 [Vibrio
parahaemolyticus RIMD 2210633]
dbj|BAC61902.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
2210633]
Length = 411
Score = 39.3 bits (90), Expect = 0.92
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
Query: 689 SSNEDMVKGMMAFTNQVSTLLGISYPVSFTTPLATTLQLFIYTKLSLNQIFN-CXXXXXX 747
++++D+++ +++FT + T G P++ T L +Q + T +S I N
Sbjct: 223 ANDDDVLQNIVSFTRTL-TDDGSGKPLTVRTWLE--IQPLLSTMMSSMDISNQVMLVVFV 279
Query: 748 XXXXXXXYSLLLSDVEGKTFEYGMLRAQGMRQYALILLLLTQSLYFSIPGIVFGLF 803
+++L V +T E+G+L A GM+Q+ + +L+ ++++ + G GLF
Sbjct: 280 LAMTLGIINIMLMSVFERTREFGVLMAVGMQQHKIRILITLETMFLGLTGCALGLF 335
>gi|32472696|ref|NP_865690.1| hypothetical protein RB3732
[Rhodopirellula baltica SH 1]
emb|CAD73375.1| conserved hypothetical protein [Pirellula sp.]
Length = 414
Score = 39.3 bits (90), Expect = 0.92
Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 7/128 (5%)
Query: 730 YTKLSLNQIFNCXXXXXXXXXXXXXYSLLLSDVEGKTFEYGMLRAQGMRQYALILLLLTQ 789
YT+ + IF Y +L SDV+ EY L+A G LI LLTQ
Sbjct: 286 YTQTPIGMIFAMGVALAVVVGGVISYMILASDVQAHLSEYATLKAMGYGTGFLIRTLLTQ 345
Query: 790 SLYFSIPGIVFGLFIGWCLYAIVAYFVYVQFVLLPIDLTYHTTSIVSGLLMGFLMPIVAN 849
S + + LYAI + V PI +T T +V ++ LM A
Sbjct: 346 STLLATIAFPPSVIAALALYAITSALAGV-----PIRMT--LTWLVLVAVLSLLMCNAAG 398
Query: 850 IAPIQRAL 857
+ I++ +
Sbjct: 399 LIAIRKLI 406
>gi|21227049|ref|NP_632971.1| hypothetical protein MM0947
[Methanosarcina mazei Go1]
gb|AAM30643.1| conserved protein [Methanosarcina mazei Goe1]
Length = 401
Score = 39.3 bits (90), Expect = 0.92
Identities = 26/110 (23%), Positives = 51/110 (45%), Gaps = 7/110 (6%)
Query: 756 SLLLSDVEGKTFEYGMLRAQGMRQYALILLLLTQSLYFSIPGIVFGLFIGWCLYAIVAYF 815
+++L V +T E G+++A G +++L + +S+ S+ G + GL +G
Sbjct: 296 NIMLVTVTERTREIGIMKALGFSSTDILVLFIVESIILSLFGGLLGLIVG-------IGG 348
Query: 816 VYVQFVLLPIDLTYHTTSIVSGLLMGFLMPIVANIAPIQRALSRTLRDAL 865
Y L + Y +G+L+ ++ + A + P +A T DAL
Sbjct: 349 AYAVTTALNLPFLYPHYIFEAGILVAIIVGVSAGVYPANKAAKLTPVDAL 398
Database: /home/dicty1/resource/WorkingDBs//nr-clean
Posted date: Mar 10, 2005 12:10 PM
Number of letters in database: 788,375,511
Number of sequences in database: 2,329,665
Lambda K H
0.322 0.139 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,797,232,081
Number of Sequences: 2329665
Number of extensions: 68229549
Number of successful extensions: 196382
Number of sequences better than 1.0: 44
Number of HSP's better than 1.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 196327
Number of HSP's gapped (non-prelim): 81
length of query: 1465
length of database: 788,375,511
effective HSP length: 140
effective length of query: 1325
effective length of database: 462,222,411
effective search space: 612444694575
effective search space used: 612444694575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 90 (39.3 bits)
BLASTP 2.2.1 [Jul-12-2001]