Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DDB0214810
         (295 letters)

Database: /home/dicty1/resource/WorkingDBs//nr-clean
           2,329,665 sequences; 788,375,511 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|422300|pir||S32566 actin-binding protein - slime mold (Physar...   400  e-110
gi|48895515|ref|ZP_00328499.1| COG0642: Signal transduction hist...    37  0.62
gi|48859680|ref|ZP_00313611.1| COG0046: Phosphoribosylformylglyc...    37  0.81

>gi|422300|pir||S32566 actin-binding protein - slime mold (Physarum
           polycephalum)  (fragment)
 gb|AAA29968.1| actin bundling protein
          Length = 281

 Score =  400 bits (1029), Expect = e-110
 Identities = 201/277 (72%), Positives = 218/277 (78%), Gaps = 1/277 (0%)

Query: 20  QSFTEKLSAEAMEFFCNVAKLPFSQQAVHFLNAYWAEVSKEAEFIYSVGWETIKYADMHC 79
           +SFTEKL AEA+++F   AK PFSQQAV FLNAYW E   EAEFIYSV WE IKYADMH 
Sbjct: 5   KSFTEKLDAEALKYFSEAAKRPFSQQAVAFLNAYWHETKNEAEFIYSVAWEMIKYADMHS 64

Query: 80  KGIQLVFKYDEGNDLDFDIALYFYEQLCKFCEDPKNKNYATTYPISQPQMLTALKRKQEL 139
           KGI L++KYDEG+DLDFDI LYFYEQLCK CEDPK+K+   TY  S P M+TA+KRKQEL
Sbjct: 65  KGISLIYKYDEGDDLDFDIGLYFYEQLCKKCEDPKHKDLPATYARSMPTMMTAIKRKQEL 124

Query: 140 REKVDVNFDGRVSFLEYLLYQYKDFANPADFCTRSMNHDEHPEIKKARLALEEVNKRIRA 199
           R++VDVNFDGR+SFLEYLLYQYKD ANPADFC RSMNHDEHPEI+KARLALEEVNKRIRA
Sbjct: 125 RDEVDVNFDGRISFLEYLLYQYKDVANPADFCHRSMNHDEHPEIRKARLALEEVNKRIRA 184

Query: 200 YEEEKARLTEE-SKIPGVKGLGATNMLAQIDSGPLKEQLNFALISAEAAVRTXXXXXXXX 258
           YEEEKARLTEE SK   VK LGA NMLAQIDSGPLKE+LN ALI+AEAAVR         
Sbjct: 185 YEEEKARLTEEASKGETVKALGAKNMLAQIDSGPLKEELNKALITAEAAVRIATKKFGGG 244

Query: 259 XXXXXXXXXXXXXXXXXIWWMNRDLEEKKKRYGPQKK 295
                            IWWMNRDLEEKKKRYGP KK
Sbjct: 245 GGLGASGGDGGGSSDGAIWWMNRDLEEKKKRYGPSKK 281


>gi|48895515|ref|ZP_00328499.1| COG0642: Signal transduction
           histidine kinase [Trichodesmium erythraeum IMS101]
          Length = 1194

 Score = 37.0 bits (84), Expect = 0.62
 Identities = 35/137 (25%), Positives = 61/137 (43%), Gaps = 24/137 (17%)

Query: 41  PFSQQAVHFLNAYWAEVSKEAEFIYSVGWETIKYADMHCKGIQLVFKYDEGNDLDF--DI 98
           P+ Q +V    A W+E+ K+      V   T+               YD+ N L     +
Sbjct: 180 PWYQASVKAGKATWSEIYKDFNSGEPVITATLPV-------------YDQQNQLKAVCGV 226

Query: 99  ALYFYEQLCKFCEDPKNKNYATTYPISQPQMLTALK-RKQELREKVDVNFDGRV------ 151
            LYFY++L +F ++ +  N    + +++  ++ A    K EL +K  + F   V      
Sbjct: 227 DLYFYQELSQFLKNLEIGNTGQAFILNKKGIIIASSIAKAELEDKDRLGFQKAVDSNNLL 286

Query: 152 --SFLEYLLYQYKDFAN 166
             S  +YL+ QYKDF++
Sbjct: 287 IKSTAQYLIDQYKDFSH 303


>gi|48859680|ref|ZP_00313611.1| COG0046:
           Phosphoribosylformylglycinamidine (FGAM) synthase,
           synthetase domain [Clostridium thermocellum ATCC 27405]
          Length = 1256

 Score = 36.6 bits (83), Expect = 0.81
 Identities = 19/67 (28%), Positives = 34/67 (50%)

Query: 141 EKVDVNFDGRVSFLEYLLYQYKDFANPADFCTRSMNHDEHPEIKKARLALEEVNKRIRAY 200
           E + ++   ++  +EYL  QY   A+ A  C + + H E P +K A+L + + +     Y
Sbjct: 71  ETISIDEKDKIVAIEYLPGQYDQRADSASQCIQILTHGERPNVKVAKLIVLQGDVSQEEY 130

Query: 201 EEEKARL 207
           E+ K  L
Sbjct: 131 EKVKKYL 137


  Database: /home/dicty1/resource/WorkingDBs//nr-clean
    Posted date:  Mar 10, 2005 12:10 PM
  Number of letters in database: 788,375,511
  Number of sequences in database:  2,329,665
  
Lambda     K      H
   0.317    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 404,436,931
Number of Sequences: 2329665
Number of extensions: 15302935
Number of successful extensions: 43609
Number of sequences better than  1.0: 3
Number of HSP's better than  1.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 43604
Number of HSP's gapped (non-prelim): 3
length of query: 295
length of database: 788,375,511
effective HSP length: 126
effective length of query: 169
effective length of database: 494,837,721
effective search space: 83627574849
effective search space used: 83627574849
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 83 (36.6 bits)
BLASTP 2.2.1 [Jul-12-2001]