Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DDB0205268
(698 letters)
Database: /home/dicty1/resource/WorkingDBs//nr-clean
2,329,665 sequences; 788,375,511 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|47213952|emb|CAF94050.1| unnamed protein product [Tetraodon n... 73 3e-11
gi|56526302|emb|CAH78160.1| conserved hypothetical protein [Plas... 47 0.002
gi|47226007|emb|CAG04381.1| unnamed protein product [Tetraodon n... 44 0.012
gi|57223418|gb|AAW41461.1| ER to Golgi transport-related protein... 42 0.062
gi|57223417|gb|AAW41460.1| ER to Golgi transport-related protein... 42 0.062
gi|50259698|gb|EAL22368.1| hypothetical protein CNBB5410 [Crypto... 42 0.062
gi|42519588|ref|NP_965518.1| hypothetical protein LJ1711 [Lactob... 41 0.14
gi|56498105|emb|CAH98118.1| conserved hypothetical protein [Plas... 40 0.18
gi|23478653|gb|EAA15682.1| putative Sec24-like protein [Plasmodi... 40 0.18
gi|50254775|gb|EAL17520.1| hypothetical protein CNBM0870 [Crypto... 40 0.23
gi|46098183|gb|EAK83416.1| hypothetical protein UM02378.1 [Ustil... 40 0.23
gi|53714874|ref|YP_100866.1| putative outer membrane protein [Ba... 40 0.31
gi|60494289|emb|CAH09084.1| conserved exported hypothetical prot... 40 0.31
gi|36958780|gb|AAQ87248.1| Acriflavin resistance plasma membrane... 39 0.68
gi|53721820|ref|YP_110805.1| putative surface-exposed protein [B... 38 0.89
>gi|47213952|emb|CAF94050.1| unnamed protein product [Tetraodon
nigroviridis]
Length = 836
Score = 72.8 bits (177), Expect = 3e-11
Identities = 43/129 (33%), Positives = 75/129 (57%), Gaps = 6/129 (4%)
Query: 307 GIVTFSDKVTMFGDGSTEPVTISDKAKLLDLSQLVEEGGLLQMNNPVSKTKNSLLEKVKT 366
G ++ + +V ++GDG+ P+T+ D A L+D + ++G +++ +++T + L + V
Sbjct: 660 GSMSVTTEVEIYGDGTRAPLTLRDWA-LVDYDYIWQQGVTYSISHCIAETYDQLKQTVDK 718
Query: 367 LRGSGSTALGSAVAACVGITGGSRGSQIIICTDGQSNMGLGATE-APEKQQMV----FEQ 421
L G+T+LG AV A V I GS++I+CTDG++N+GLG E P V ++
Sbjct: 719 LEEHGATSLGPAVLASVAIASKYPGSKVILCTDGRANIGLGKMEDTPSVSSSVPPYFYKH 778
Query: 422 IANMAQRSG 430
+A A SG
Sbjct: 779 VAQQAVDSG 787
>gi|56526302|emb|CAH78160.1| conserved hypothetical protein
[Plasmodium chabaudi]
Length = 1129
Score = 47.0 bits (110), Expect = 0.002
Identities = 81/388 (20%), Positives = 146/388 (36%), Gaps = 48/388 (12%)
Query: 254 SSLVSNSGIYDNEIPEKLAALTKVSYVSRLQCVQIGLLHQIESIAEKY--PNKRVGIVTF 311
+S++S N +P + SY + + +L I+ + P ++ I+T+
Sbjct: 521 NSILSKYKQIKNMLPPYFVFVIDCSYNAIYNNITYTVLEGIKYAVKNVTCPKTKIAIITY 580
Query: 312 SDKVTMFG----DGSTEPVTISDKAKLLDLSQ------LVEEGGLLQMNNPVSKTKNSLL 361
S+ + F DG T + LS V+E L ++NN + K +L
Sbjct: 581 SNSLFFFNCKYLDGGNGATTDDIDDPFVPLSHDDIFLSCVDE--LDKINNLIDTIK-TLC 637
Query: 362 EKVKTLRGSGSTALGSAVAACVGITGGSRGSQIIICTDGQSNMGLGATEAPEKQQMVFEQ 421
K++ G++AL +A+ G S T N G+GA E ++ E
Sbjct: 638 PKMQAYGSCGNSALKAAIEILKERNGVGSISMFYTSTP---NCGIGAIN--EIKRTPKEN 692
Query: 422 IANMAQRS--------------GTSISVLTIKGTDTKLEVIGKLANNTGGEVNIMDPINL 467
+ + Q+S T + +++ T + + +A NTGG++ ++
Sbjct: 693 LFEVHQKSFYDSMLLDLYNYNISTDVFIISANNTRICVPTLQYVAQNTGGKILFLENFIW 752
Query: 468 NDGFKEI-------LSLPTLATNVSVKIFLHKGLYVSDFDNNNNTEKSFVER---VIGNV 517
+KEI L+ +A +K+ + + V NN S + I +
Sbjct: 753 QKDYKEIYMNIKDILTSEDIAYCCELKLRYSQNISVKKLFCCNNNFNSIIRSDTIKIPKI 812
Query: 518 NQDTTISFEYGVRXXXXXXXXXXXXPFQLQIFYTTLTGKKCVRMITQTQEITTSSDLAEE 577
D T F + Q YT L G + VR+ T +T+S A
Sbjct: 813 RHDQTFGF---LLNYSDISDSKKQVYIQCACIYTNLNGDRYVRLHTTHMNVTSSLSTAFR 869
Query: 578 HANIEAL-GINMVQTSTKIASSGDYEKS 604
+ + EAL I + Q I + +Y K+
Sbjct: 870 YTDAEALMNILIKQLCMDILHNENYSKN 897
>gi|47226007|emb|CAG04381.1| unnamed protein product [Tetraodon
nigroviridis]
Length = 768
Score = 44.3 bits (103), Expect = 0.012
Identities = 35/159 (22%), Positives = 67/159 (42%), Gaps = 11/159 (6%)
Query: 512 RVIGNVNQDTTISFEYGV---RXXXXXXXXXXXXPFQLQIFYTTLTGKKCVRMITQTQEI 568
R +GNV+ DT I+F++G QLQ+ Y G+ +R+I+ + +
Sbjct: 592 REVGNVDPDTEITFQFGAHEQNTLVAAPASGSCVSIQLQVRYRQRNGQTMLRVISSERTV 651
Query: 569 TTSSDLAEEHANIEALGINMVQTSTKIASSGDYEKSRAKNYSHAGLMQKVMMKKQKATKV 628
T +S ++ + +N Q S +A G + +R + G +Q+ ++ +A
Sbjct: 652 TDNSAAILSSLSLAIIQLNSSQASAALAVRGRFLDARRE-----GKLQRQLI---EAAIE 703
Query: 629 DSDEIDSMSNYMQQAQDIETQLSNTVSNEKSYNSSGDRL 667
+ +D Y Q + +E N +S +G L
Sbjct: 704 HNRSVDDKHTYHQWVKTMEPIYKNIFHFTRSLTDAGAAL 742
Score = 39.7 bits (91), Expect = 0.31
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 27/91 (29%)
Query: 231 VIFCIDISGSMEVTQSVNGLSIPSSLVSNSGIYDNEIPEKLAALTKVSYVSRLQCVQIGL 290
++FCID+SGSM +T V + +V S +++ + +QCVQ
Sbjct: 478 LLFCIDVSGSMSITSQV---TEKEGVVHRSRLHE----------------AVIQCVQ--- 515
Query: 291 LHQIESIAEKYPNKRVGIVTFSDKVTMFGDG 321
++++ P+ RVG++TF+++V + DG
Sbjct: 516 -----RLSDQQPDMRVGLITFNNQVIICTDG 541
>gi|57223418|gb|AAW41461.1| ER to Golgi transport-related protein,
putative [Cryptococcus neoformans var. neoformans JEC21]
ref|XP_568768.1| ER to Golgi transport-related protein, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 857
Score = 42.0 bits (97), Expect = 0.062
Identities = 56/298 (18%), Positives = 118/298 (38%), Gaps = 42/298 (14%)
Query: 359 SLLEKVKTLRGSGST---ALGSAVAACVGITGGSRGSQIIICTDGQSNMGLGATEAPEKQ 415
SLL K+ + T ALGS + A + G G +II +G G +A +
Sbjct: 353 SLLAKLSDMFQDSHTVGSALGSGLQAAHQLIG-KIGGKIIALGASLPTIGEGVLKARDDP 411
Query: 416 QMV---------------FEQIANMAQRSGTSISVLTIKGTDTKLEVIGKLANNTGGEVN 460
+++ ++ A ++ S+ + GT T + +G L T G+
Sbjct: 412 KLLGTSKESQLLNAGNNWYKTFAIECSKNQVSVDMFLFSGTYTDVATLGCLPRYTAGQTY 471
Query: 461 IM---------DPINLNDGFKEILSLPTLATNVSVKIFLHKGLYVSDFDNN---NNTEKS 508
+ D I F ++L++P + +++ +G+ +S F N +T+
Sbjct: 472 LYPGFNASRSEDAIKFATEFGKVLAMP-IGLEAVIRVRASRGIRMSAFHGNFFIRSTDLL 530
Query: 509 FVERVIGNVNQDTTISFEYGVRXXXXXXXXXXXXPFQLQIFYTTLTGKKCVRMITQTQEI 568
+ V + N + E ++ Q + +TT G++ +R+ITQ +
Sbjct: 531 ALPVVPQDQNYVIELQIEDDIKGSFVV--------IQTAVLHTTCYGERRIRVITQA--M 580
Query: 569 TTSSDLAEEHANIEALGINMVQTSTKIASSGDYEKSRAKNYSHAGLMQKVMMKKQKAT 626
T+ +AE + + + + + + + S + A+N+ L + + + K + T
Sbjct: 581 PTTDSIAELYTSADQIALATYLANKAVERSMSHSLDDARNHVTNRLGEMLTVYKNQVT 638
>gi|57223417|gb|AAW41460.1| ER to Golgi transport-related protein,
putative [Cryptococcus neoformans var. neoformans JEC21]
ref|XP_568767.1| ER to Golgi transport-related protein, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 920
Score = 42.0 bits (97), Expect = 0.062
Identities = 56/298 (18%), Positives = 118/298 (38%), Gaps = 42/298 (14%)
Query: 359 SLLEKVKTLRGSGST---ALGSAVAACVGITGGSRGSQIIICTDGQSNMGLGATEAPEKQ 415
SLL K+ + T ALGS + A + G G +II +G G +A +
Sbjct: 416 SLLAKLSDMFQDSHTVGSALGSGLQAAHQLIG-KIGGKIIALGASLPTIGEGVLKARDDP 474
Query: 416 QMV---------------FEQIANMAQRSGTSISVLTIKGTDTKLEVIGKLANNTGGEVN 460
+++ ++ A ++ S+ + GT T + +G L T G+
Sbjct: 475 KLLGTSKESQLLNAGNNWYKTFAIECSKNQVSVDMFLFSGTYTDVATLGCLPRYTAGQTY 534
Query: 461 IM---------DPINLNDGFKEILSLPTLATNVSVKIFLHKGLYVSDFDNN---NNTEKS 508
+ D I F ++L++P + +++ +G+ +S F N +T+
Sbjct: 535 LYPGFNASRSEDAIKFATEFGKVLAMP-IGLEAVIRVRASRGIRMSAFHGNFFIRSTDLL 593
Query: 509 FVERVIGNVNQDTTISFEYGVRXXXXXXXXXXXXPFQLQIFYTTLTGKKCVRMITQTQEI 568
+ V + N + E ++ Q + +TT G++ +R+ITQ +
Sbjct: 594 ALPVVPQDQNYVIELQIEDDIKGSFVV--------IQTAVLHTTCYGERRIRVITQA--M 643
Query: 569 TTSSDLAEEHANIEALGINMVQTSTKIASSGDYEKSRAKNYSHAGLMQKVMMKKQKAT 626
T+ +AE + + + + + + + S + A+N+ L + + + K + T
Sbjct: 644 PTTDSIAELYTSADQIALATYLANKAVERSMSHSLDDARNHVTNRLGEMLTVYKNQVT 701
>gi|50259698|gb|EAL22368.1| hypothetical protein CNBB5410
[Cryptococcus neoformans var. neoformans B-3501A]
Length = 920
Score = 42.0 bits (97), Expect = 0.062
Identities = 56/298 (18%), Positives = 118/298 (38%), Gaps = 42/298 (14%)
Query: 359 SLLEKVKTLRGSGST---ALGSAVAACVGITGGSRGSQIIICTDGQSNMGLGATEAPEKQ 415
SLL K+ + T ALGS + A + G G +II +G G +A +
Sbjct: 416 SLLAKLSDMFQDSHTVGSALGSGLQAAHQLIG-KIGGKIIALGASLPTIGEGVLKARDDP 474
Query: 416 QMV---------------FEQIANMAQRSGTSISVLTIKGTDTKLEVIGKLANNTGGEVN 460
+++ ++ A ++ S+ + GT T + +G L T G+
Sbjct: 475 KLLGTSKESQLLNAGNNWYKTFAIECSKNQVSVDMFLFSGTYTDVATLGCLPRYTAGQTY 534
Query: 461 IM---------DPINLNDGFKEILSLPTLATNVSVKIFLHKGLYVSDFDNN---NNTEKS 508
+ D I F ++L++P + +++ +G+ +S F N +T+
Sbjct: 535 LYPGFNASRSEDAIKFATEFGKVLAMP-IGLEAVIRVRASRGIRMSAFHGNFFIRSTDLL 593
Query: 509 FVERVIGNVNQDTTISFEYGVRXXXXXXXXXXXXPFQLQIFYTTLTGKKCVRMITQTQEI 568
+ V + N + E ++ Q + +TT G++ +R+ITQ +
Sbjct: 594 ALPVVPQDQNYVIELQIEDDIKGSFVV--------IQTAVLHTTCYGERRIRVITQA--M 643
Query: 569 TTSSDLAEEHANIEALGINMVQTSTKIASSGDYEKSRAKNYSHAGLMQKVMMKKQKAT 626
T+ +AE + + + + + + + S + A+N+ L + + + K + T
Sbjct: 644 PTTDSIAELYTSADQIALATYLANKAVERSMSHSLDDARNHVTNRLGEMLTVYKNQVT 701
>gi|42519588|ref|NP_965518.1| hypothetical protein LJ1711
[Lactobacillus johnsonii NCC 533]
gb|AAS09484.1| hypothetical protein LJ1711 [Lactobacillus johnsonii NCC 533]
Length = 3039
Score = 40.8 bits (94), Expect = 0.14
Identities = 85/449 (18%), Positives = 188/449 (40%), Gaps = 37/449 (8%)
Query: 237 ISGSMEVTQSV-NGLSIPSSL---VSNSGIYDNEIPEKLAALTKVSYVSRLQCVQIGLLH 292
+S S+ +++S+ N +S+ SL VS S N + + VS RL + +
Sbjct: 2012 LSNSVSMSESISNSVSMSESLSNSVSMSESLSNSVSMSESISNSVSMSERLSN-SVSMSE 2070
Query: 293 QIE---SIAEKYPNKRVGIVTFSDKVTMFGDGSTEPVTISDKAKLLDLSQLVEEGGLLQM 349
I S++E N + S+ V M + + V++S+ +S V L
Sbjct: 2071 SISNSVSMSESMSNSVSMSESLSNSVNM-SESLSNSVSMSES-----MSNSVSMSESLSN 2124
Query: 350 NNPVSKTKNSLLEKVKTLRGSGSTALGSAVAACVGITGGSRGSQIIICTDGQSNMGLGAT 409
+ +S++ + + ++L S S ++ +++ V ++ S + ++ SN + +
Sbjct: 2125 SVSMSESLSDSVSMSESL--SNSVSMSESLSNSVSMSESLSSS--VSMSESISN-SVSMS 2179
Query: 410 EAPEKQQMVFEQIANMAQRSGT-SISVLTIKGTDTKLEVIGKLANNTGGEVNIMDPINLN 468
E+ + E I+N SG+ S SV + + + ++N+ ++ ++++
Sbjct: 2180 ESLSNSVSMSESISNSVSMSGSMSNSVSMSESLSNSVSMSESMSNSVSMSESLSISVSMS 2239
Query: 469 DGFKEILSLP-TLATNVSVKIFLHKGLYVSDFDNNNNTEKSFVERVIGNVNQDTTISFEY 527
+ +SL +L+ +VS+ L + VS+ +N+ S E + +V+ ++S
Sbjct: 2240 ESLSNSVSLSESLSNSVSMSESLSNSVCVSESLSNS---VSMSESLSNSVSMSESLSNSV 2296
Query: 528 GVRXXXXXXXXXXXXPFQLQIFYTTLTGKKCV-----RMITQTQEITTSSDLAEEHANIE 582
+ +L+ C+ ++ ++ ++ S ++E +N
Sbjct: 2297 SMSESLSNSVSMSESLSNSVSMSESLSNSVCMSESLSNSVSMSESLSNSVSMSESLSNSV 2356
Query: 583 ALG---INMVQTSTKIASSGDYEKSRAKNYSHA-GLMQKVMMKKQKATKVDSDEIDS--- 635
++ N V S +++S +S + + S + L V M + + V E S
Sbjct: 2357 SMSESLSNSVSMSESLSNSVSMSESLSNSVSMSESLSNSVSMSESLSNSVSMSESMSNSV 2416
Query: 636 -MSNYMQQAQDIETQLSNTVSNEKSYNSS 663
MS M + + LSN+VS +S ++S
Sbjct: 2417 SMSESMSNSVSMSESLSNSVSMSESMSNS 2445
>gi|56498105|emb|CAH98118.1| conserved hypothetical protein
[Plasmodium berghei]
Length = 1320
Score = 40.4 bits (93), Expect = 0.18
Identities = 59/286 (20%), Positives = 109/286 (37%), Gaps = 34/286 (11%)
Query: 348 QMNNPVSKTKNSLLEKVKTLRGSGSTALGSAVAACVGITGGSRGSQIIICTDGQSNMGLG 407
++NN + K +L K++ G++AL A+ G S T N G+G
Sbjct: 805 KINNLIDTIK-TLCPKMQAYGSCGNSALKVAIEILKERNGVGSISMFYASTP---NCGVG 860
Query: 408 ATEAPEKQQMVFEQIANMAQRS--------------GTSISVLTIKGTDTKLEVIGKLAN 453
A ++ + E + + Q+S T + +++ T + + +A
Sbjct: 861 AINEIKRTEQ--ENLFEVQQKSFYDSMLLDLYNYNISTDVFIISANNTRICVPTLQYVAQ 918
Query: 454 NTGGEVNIMDPINLNDGFKEI-------LSLPTLATNVSVKIFLHKGLYVSDF---DNNN 503
NTGG++ ++ +KEI L+ +A +K+ + + V +NN
Sbjct: 919 NTGGKILFLENFIWQKDYKEIYMNIKDILTSENIAYCCELKLRYSQNISVKKLLCCNNNF 978
Query: 504 NTEKSFVERVIGNVNQDTTISFEYGVRXXXXXXXXXXXXPFQLQIFYTTLTGKKCVRMIT 563
N+ S I + D T +F + Q YT L G + VR+ T
Sbjct: 979 NSIISVDTIKIPKIRHDQTFAF---LLNYSDISESKKQVYIQCACIYTNLNGDRYVRLHT 1035
Query: 564 QTQEITTSSDLAEEHANIEAL-GINMVQTSTKIASSGDYEKSRAKN 608
+T+S A + + E L I + Q + + +Y K+ N
Sbjct: 1036 THMNVTSSLSTAFRYTDAETLMNILIKQLCMDVLHNENYSKNIIDN 1081
>gi|23478653|gb|EAA15682.1| putative Sec24-like protein [Plasmodium
yoelii yoelii]
Length = 1396
Score = 40.4 bits (93), Expect = 0.18
Identities = 59/286 (20%), Positives = 109/286 (37%), Gaps = 34/286 (11%)
Query: 348 QMNNPVSKTKNSLLEKVKTLRGSGSTALGSAVAACVGITGGSRGSQIIICTDGQSNMGLG 407
++NN + K +L K++ G++AL A+ G S T N G+G
Sbjct: 868 KINNLIDTIK-TLCPKMQAYGSCGNSALKVAIEILKERNGVGSISMFYASTP---NCGIG 923
Query: 408 ATEAPEKQQMVFEQIANMAQRS--------------GTSISVLTIKGTDTKLEVIGKLAN 453
A ++ + E + + Q+S T + +++ T + + +A
Sbjct: 924 AINEIKRTKQ--ENLFEVQQKSFYDSMLLDLYNYNISTDVFIISANNTRICVPTLQYVAQ 981
Query: 454 NTGGEVNIMDPINLNDGFKEI-------LSLPTLATNVSVKIFLHKGLYVSDF---DNNN 503
NTGG++ ++ +KEI L+ +A +K+ + + V +NN
Sbjct: 982 NTGGKILFLENFIWQKDYKEIYMNIKDILTSENIAYCCELKLRYSQNISVKKLLCCNNNF 1041
Query: 504 NTEKSFVERVIGNVNQDTTISFEYGVRXXXXXXXXXXXXPFQLQIFYTTLTGKKCVRMIT 563
N+ S I + D T +F + Q YT L G + VR+ T
Sbjct: 1042 NSIISVDTIKIPKIRHDQTFAF---LLNYSDISESKKQLYIQCACIYTNLNGDRYVRLHT 1098
Query: 564 QTQEITTSSDLAEEHANIEAL-GINMVQTSTKIASSGDYEKSRAKN 608
+T+S A + + E L I + Q + + +Y K+ N
Sbjct: 1099 THMNVTSSLSTAFRYTDAETLMNILIKQLCMDVLHNENYSKNIIDN 1144
>gi|50254775|gb|EAL17520.1| hypothetical protein CNBM0870
[Cryptococcus neoformans var. neoformans B-3501A]
gb|AAW46895.1| ER to Golgi transport-related protein, putative [Cryptococcus
neoformans var. neoformans JEC21]
ref|XP_568412.1| ER to Golgi transport-related protein, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 1003
Score = 40.0 bits (92), Expect = 0.23
Identities = 56/241 (23%), Positives = 94/241 (38%), Gaps = 35/241 (14%)
Query: 368 RGSGSTALGSAVAACVGITGGSR--GSQIIICTDGQSNMGLGATEAPE--------KQQM 417
R G A GSA+ VG G + G QI + + GLG E K++
Sbjct: 505 REGGRVAAGSAI---VGALAGLKHTGGQINLFLTSLTTHGLGTLTTRENPDYYNTDKERT 561
Query: 418 VFEQ------IANMAQRSGTSISVLTIKGTDTKLEVIGKLANNTGGEV-------NIMDP 464
+F A+ +G +++ T + +G LA TGGE + D
Sbjct: 562 LFTPSQWYLTTADQLAEAGVGVNLFLFPSAYTDIASLGALAAGTGGETFFHPRFDVVRDR 621
Query: 465 INLNDGFKEILSLPTLATNVSVKIFLHKGLYVSDFDNNNNTEKSFVERVIGNVNQDTTIS 524
++ ++L+ T A N +V++ GL VSD N F +R + ++ T S
Sbjct: 622 EKIHSELLQVLTRET-AYNATVRVRCSNGLRVSDHLGN------FYQRSLTDLEYATIDS 674
Query: 525 FEYGVRXXXXXXXXXXXXP--FQLQIFYTTLTGKKCVRMITQTQEITTSSDLAEEHANIE 582
+ P Q+ I YT+ G++ VR + + +T+ + A+ E
Sbjct: 675 AKSFTAVLKHEHRLDDRQPAFIQVAILYTSKEGERRVRCLNMSFVVTSMIGNVFKFADQE 734
Query: 583 A 583
A
Sbjct: 735 A 735
>gi|46098183|gb|EAK83416.1| hypothetical protein UM02378.1 [Ustilago
maydis 521]
ref|XP_399993.1| hypothetical protein UM02378.1 [Ustilago maydis 521]
Length = 1187
Score = 40.0 bits (92), Expect = 0.23
Identities = 69/287 (24%), Positives = 112/287 (38%), Gaps = 43/287 (14%)
Query: 305 RVGIVTFSDKVTMFGDGSTEPVTISDKAKLLDLSQLVE-----EGGLLQMNNPVSKTKNS 359
RV I+TF D+ F + S E D+A++L + + E GLL
Sbjct: 612 RVAILTF-DRALHFYNLSAE----LDQAQMLVVGDIDEPFVPISDGLLADVWESRHLIEG 666
Query: 360 LLEKVKTLRGS---GSTALGSAVAACVGITGGSRGSQIIICTDGQSNMGLGATEAPEKQQ 416
LLE + ++ G G ALG+AV + G Q+ I +G GA + E +
Sbjct: 667 LLENLPSMFGENMVGDAALGAAVRGAQAALS-TIGGQVNIFLSTIPTVGPGALKHREDTK 725
Query: 417 MV---------------FEQIANMAQRSGTSISVLTIKGTDTKLEVIGKLANNTGGEVNI 461
+ + +A +G I+V + IG L +TGGEV
Sbjct: 726 LYGTDKEKNLFIPQDGFYRGVAEECVDAGIGINVFFFPSQYIDVATIGVLPGSTGGEVFF 785
Query: 462 ---MDPINLNDGFKEILS-----LPTLATNVSVKIFLHKGLYVSDFDNNNNTEKSFVERV 513
DP+ DG K + L A NV++++ GL V+D N + + +
Sbjct: 786 HPRFDPV--RDGIKLQIEVRRTVLRETAYNVTMRLRCSNGLRVAD-HFGNFFQHNATDLE 842
Query: 514 IGNVNQDTTISFEYGVRXXXXXXXXXXXXPFQLQIFYTTLTGKKCVR 560
+G ++ D ++ + FQ + YTT G++ VR
Sbjct: 843 LGTMDADKCVA---ALVKHDSKLDEKHEAHFQCAVLYTTAEGERRVR 886
>gi|53714874|ref|YP_100866.1| putative outer membrane protein
[Bacteroides fragilis YCH46]
dbj|BAD50332.1| putative outer membrane protein [Bacteroides fragilis YCH46]
Length = 610
Score = 39.7 bits (91), Expect = 0.31
Identities = 39/171 (22%), Positives = 77/171 (44%), Gaps = 30/171 (17%)
Query: 357 KNSLLEKVKTLRGSGSTALGSAVAACVGI------TGGSRGSQIIICTDGQSNMGLGATE 410
K + E + L SGSTA G + I +GG+ ++II+CTDG N+G+ + +
Sbjct: 308 KQKIREAIDELEASGSTAGGEGIMLAYKIAQKNFISGGN--NRIILCTDGDFNVGVSSDK 365
Query: 411 APEKQQMVFEQIANMAQRSGTSISVLTI---KGTDTKLEVIGKLANNTGGEVNIMDPINL 467
EK + ++SG ++VL D+K++ + + N ++ + N
Sbjct: 366 ELEK-------LIEQKRKSGIFLTVLGYGMGNYKDSKMQTLSEKGNGNHAYIDNLQEANR 418
Query: 468 NDGFKEILSLPTLATNVSVKIFL------------HKGLYVSDFDNNNNTE 506
+ +L T+A +V +++ ++ ++D D NN+T+
Sbjct: 419 VLVNEFGATLHTVAKDVKLQVEFNPAQVQAYRLIGYESRLLADEDFNNDTK 469
>gi|60494289|emb|CAH09084.1| conserved exported hypothetical protein
[Bacteroides fragilis NCTC 9343]
Length = 610
Score = 39.7 bits (91), Expect = 0.31
Identities = 39/171 (22%), Positives = 77/171 (44%), Gaps = 30/171 (17%)
Query: 357 KNSLLEKVKTLRGSGSTALGSAVAACVGI------TGGSRGSQIIICTDGQSNMGLGATE 410
K + E + L SGSTA G + I +GG+ ++II+CTDG N+G+ + +
Sbjct: 308 KQKIREAIDELEASGSTAGGEGIMLAYKIAQKNFISGGN--NRIILCTDGDFNVGVSSDK 365
Query: 411 APEKQQMVFEQIANMAQRSGTSISVLTI---KGTDTKLEVIGKLANNTGGEVNIMDPINL 467
EK + ++SG ++VL D+K++ + + N ++ + N
Sbjct: 366 ELEK-------LIEQKRKSGIFLTVLGYGMGNYKDSKMQTLAEKGNGNHAYIDNLQEANR 418
Query: 468 NDGFKEILSLPTLATNVSVKIFL------------HKGLYVSDFDNNNNTE 506
+ +L T+A +V +++ ++ ++D D NN+T+
Sbjct: 419 VLVNEFGATLHTVAKDVKLQVEFNPAQVQAYRLIGYESRLLADEDFNNDTK 469
>gi|36958780|gb|AAQ87248.1| Acriflavin resistance plasma membrane
protein (truncated) [Rhizobium sp. NGR234]
Length = 718
Score = 38.5 bits (88), Expect = 0.68
Identities = 34/157 (21%), Positives = 66/157 (41%), Gaps = 30/157 (19%)
Query: 353 VSKTKNSLLEKVKTLRGSGSTALGSAV-------------AACVGITGGSRGSQIIICTD 399
+ +L E+++TL G G+ +A AA +G+T + + TD
Sbjct: 334 LDSASTALEEQLRTLNGIGAVTSSAARQAPEVQITPDFARAAALGVTSSDIAEAVRVATD 393
Query: 400 GQSNMGLGATEAPEKQQMVFEQIANMAQRSGTSISVLTIKGTDTKLEVIGKLAN-NTGGE 458
G+ + L P++Q + + A+ + I + + GT ++ +G +A+ GG
Sbjct: 394 GEYSSALPKLNLPQRQVPIVVRFTPEARTNLDDIRNMRVAGTTGSVD-LGSIADIRVGGS 452
Query: 459 VNIMDPIN---------------LNDGFKEILSLPTL 480
+ +D I+ LND ++E +LP L
Sbjct: 453 PSEIDRIDRMRNVTLSVELNGRILNDVYREAKALPAL 489
>gi|53721820|ref|YP_110805.1| putative surface-exposed protein
[Burkholderia pseudomallei K96243]
emb|CAH38256.1| putative surface-exposed protein [Burkholderia pseudomallei K96243]
Length = 1653
Score = 38.1 bits (87), Expect = 0.89
Identities = 51/255 (20%), Positives = 94/255 (36%), Gaps = 27/255 (10%)
Query: 354 SKTKNSLLEKVKTLRGSGSTALGSAVAACVGITGGSRGSQIIICTDGQSNMGLGATEAPE 413
SKT ++ ++ G+ GS A+ V + G+ GS+ I + G+T+A
Sbjct: 443 SKTAAAVATSTVSVNGANYAVAGSGPASTVSV--GAPGSERTITNVAAGQVSAGSTDAVN 500
Query: 414 KQQMVFEQIA-----NMAQRSGTSISVLTIKGTDTKLEVIGKL------ANNTGGEVNIM 462
++ A + A S S+S T G + IG L AN+T ++
Sbjct: 501 GSELYATNQAITTGLSTANSSIASLSTSTSTGLSSANSNIGSLSTGLSTANSTVASLSSS 560
Query: 463 DPINLNDGFKEILSLPTLATNVSVKIFLHKGLYVSDFDNNNNTEKSFVERVIGNVNQDTT 522
L+ + SL T + + G + N+T S + ++N +T
Sbjct: 561 TSTGLSSANSAVASLSTSTSTGLSSANSNIGSLSTGLSTANSTVASLSTSTVASLNSLST 620
Query: 523 ISFEYGVRXXXXXXXXXXXXPFQLQIFYTTLTGKKCVRMITQTQEITTSSDLAEEHANIE 582
G+ +T TG + +TS+ L+ ++NI
Sbjct: 621 -----GLSTTNSNVASLSS---------STSTGLSSANSAVASLSTSTSTGLSSANSNIG 666
Query: 583 ALGINMVQTSTKIAS 597
+L + T++ +AS
Sbjct: 667 SLSTGLSTTNSTVAS 681
Database: /home/dicty1/resource/WorkingDBs//nr-clean
Posted date: Mar 10, 2005 12:10 PM
Number of letters in database: 788,375,511
Number of sequences in database: 2,329,665
Lambda K H
0.313 0.131 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 815,391,989
Number of Sequences: 2329665
Number of extensions: 31580993
Number of successful extensions: 74627
Number of sequences better than 1.0: 15
Number of HSP's better than 1.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 74455
Number of HSP's gapped (non-prelim): 49
length of query: 698
length of database: 788,375,511
effective HSP length: 135
effective length of query: 563
effective length of database: 473,870,736
effective search space: 266789224368
effective search space used: 266789224368
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 87 (38.1 bits)
BLASTP 2.2.1 [Jul-12-2001]