Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DDB0205029
(1333 letters)
Database: /home/dicty1/resource/WorkingDBs//nr-clean
2,329,665 sequences; 788,375,511 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|46101566|gb|EAK86799.1| hypothetical protein UM05854.1 [Ustil... 44 0.044
gi|34867545|ref|XP_213658.2| similar to CTD-binding SR-like prot... 42 0.098
gi|6685965|sp|Q63627|SFRF_RAT Splicing factor, arginine/serine-r... 42 0.098
gi|24652816|ref|NP_610701.1| CG12443-PA [Drosophila melanogaster... 40 0.37
gi|34784233|gb|AAH57592.1| Sfrs15 protein [Mus musculus] 40 0.37
gi|31418605|gb|AAH53096.1| Sfrs15 protein [Mus musculus] 40 0.37
gi|19353682|gb|AAH24860.1| Sfrs15 protein [Mus musculus] 40 0.37
gi|51769540|ref|XP_489602.1| similar to AA517739 protein [Mus mu... 40 0.37
gi|51769390|ref|XP_484570.1| PREDICTED: expressed sequence AA517... 40 0.37
gi|46371741|gb|AAS90559.1| thisbe [Drosophila melanogaster] 40 0.37
gi|52007927|ref|ZP_00335304.1| COG1530: Ribonucleases G and E [T... 40 0.63
gi|6752415|gb|AAF27718.1| PspA [Streptococcus pneumoniae] 40 0.63
gi|44984214|gb|AAS53180.1| AFL194Wp [Ashbya gossypii ATCC 10895]... 39 0.83
gi|55250418|gb|AAH85814.1| Special AT-rich sequence binding prot... 39 0.83
>gi|46101566|gb|EAK86799.1| hypothetical protein UM05854.1 [Ustilago
maydis 521]
ref|XP_403469.1| hypothetical protein UM05854.1 [Ustilago maydis 521]
Length = 1654
Score = 43.5 bits (101), Expect = 0.044
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 505 EQKQRQQKTPRSQVQQKSQERTTPPKPSPNQPQSAPNVNSPQAVVAPKSQTKSNDQKHKT 564
+Q+Q+QQ+ + Q QQ+ Q++ P +P+P Q + P QA+ A +QT+ N Q T
Sbjct: 1578 QQQQQQQQQQQQQQQQQQQQQQQPQQPAPTQQRPPPQQLLNQAIQALAAQTQKNQQPAPT 1637
>gi|34867545|ref|XP_213658.2| similar to CTD-binding SR-like protein
RA4 [Rattus norvegicus]
Length = 1278
Score = 42.4 bits (98), Expect = 0.098
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 505 EQKQRQQKTPRSQVQQKSQERTTPPKPSPNQPQSAPNVNSPQAVVAPKSQTKSNDQKHKT 564
+Q+ +QQ+ + Q QQ+ Q++ P P +Q Q P + A + Q ND + +
Sbjct: 1064 QQQPQQQQQQQQQQQQQQQQQQQQPPPQQSQTQQQPAPSQQPAPAQQQPQQFRNDNRQQF 1123
Query: 565 NDRRSETKVGKKS 577
N R + + G++S
Sbjct: 1124 NSGRDQERFGRRS 1136
>gi|6685965|sp|Q63627|SFRF_RAT Splicing factor, arginine/serine-rich
15 (CTD-binding SR-like protein RA4)
gb|AAC52660.1| rA4
pir||T31425 C-terminal domain-binding protein rA4, splice form 2 - rat
(fragment)
Length = 1048
Score = 42.4 bits (98), Expect = 0.098
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 505 EQKQRQQKTPRSQVQQKSQERTTPPKPSPNQPQSAPNVNSPQAVVAPKSQTKSNDQKHKT 564
+Q+ +QQ+ + Q QQ+ Q++ P P +Q Q P + A + Q ND + +
Sbjct: 834 QQQPQQQQQQQQQQQQQQQQQQQQPPPQQSQTQQQPAPSQQPAPAQQQPQQFRNDNRQQF 893
Query: 565 NDRRSETKVGKKS 577
N R + + G++S
Sbjct: 894 NSGRDQERFGRRS 906
>gi|24652816|ref|NP_610701.1| CG12443-PA [Drosophila melanogaster]
gb|AAF58621.1| CG12443-PA [Drosophila melanogaster]
Length = 665
Score = 40.4 bits (93), Expect = 0.37
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 505 EQKQRQQKTPRSQVQQKSQERTT--PPKPSPNQPQSAPNVNSPQAVVAPKSQTKSND--Q 560
+Q +++QK + Q QQ+ Q+R + P P P P +AP A +P + T+S
Sbjct: 181 QQHEKKQKRRKQQKQQQHQQRVSASPTNPMPATPTAAPAATPTVAATSPATATRSTTAAM 240
Query: 561 KHKTNDRRSETKVGKKS 577
K RR + KV K+
Sbjct: 241 SSKRKGRRRKAKVRPKA 257
>gi|34784233|gb|AAH57592.1| Sfrs15 protein [Mus musculus]
Length = 1209
Score = 40.4 bits (93), Expect = 0.37
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 506 QKQRQQKTPRSQVQQKSQERTTPPKPSPNQPQSAPNVNSPQAVVAPKSQTKSNDQKHKTN 565
Q+Q QQ+ P Q QQ+ Q + PP+ SP+Q + PQ ND + + N
Sbjct: 1006 QQQPQQQPPPQQQQQQQQPQQQPPQQSPSQQPAPAQQQPPQF---------RNDSRQQFN 1056
Query: 566 DRRSETKVGKKS 577
R + + G++S
Sbjct: 1057 SGRDQERFGRRS 1068
>gi|31418605|gb|AAH53096.1| Sfrs15 protein [Mus musculus]
Length = 1183
Score = 40.4 bits (93), Expect = 0.37
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 506 QKQRQQKTPRSQVQQKSQERTTPPKPSPNQPQSAPNVNSPQAVVAPKSQTKSNDQKHKTN 565
Q+Q QQ+ P Q QQ+ Q + PP+ SP+Q + PQ ND + + N
Sbjct: 980 QQQPQQQPPPQQQQQQQQPQQQPPQQSPSQQPAPAQQQPPQF---------RNDSRQQFN 1030
Query: 566 DRRSETKVGKKS 577
R + + G++S
Sbjct: 1031 SGRDQERFGRRS 1042
>gi|19353682|gb|AAH24860.1| Sfrs15 protein [Mus musculus]
Length = 382
Score = 40.4 bits (93), Expect = 0.37
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 506 QKQRQQKTPRSQVQQKSQERTTPPKPSPNQPQSAPNVNSPQAVVAPKSQTKSNDQKHKTN 565
Q+Q QQ+ P Q QQ+ Q + PP+ SP+Q + PQ ND + + N
Sbjct: 179 QQQPQQQPPPQQQQQQQQPQQQPPQQSPSQQPAPAQQQPPQF---------RNDSRQQFN 229
Query: 566 DRRSETKVGKKS 577
R + + G++S
Sbjct: 230 SGRDQERFGRRS 241
>gi|51769540|ref|XP_489602.1| similar to AA517739 protein [Mus
musculus]
Length = 1187
Score = 40.4 bits (93), Expect = 0.37
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 506 QKQRQQKTPRSQVQQKSQERTTPPKPSPNQPQSAPNVNSPQAVVAPKSQTKSNDQKHKTN 565
Q+Q QQ+ P Q QQ+ Q + PP+ SP+Q + PQ ND + + N
Sbjct: 984 QQQPQQQPPPQQQQQQQQPQQQPPQQSPSQQPAPAQQQPPQF---------RNDSRQQFN 1034
Query: 566 DRRSETKVGKKS 577
R + + G++S
Sbjct: 1035 SGRDQERFGRRS 1046
>gi|51769390|ref|XP_484570.1| PREDICTED: expressed sequence AA517739
[Mus musculus]
Length = 1245
Score = 40.4 bits (93), Expect = 0.37
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 506 QKQRQQKTPRSQVQQKSQERTTPPKPSPNQPQSAPNVNSPQAVVAPKSQTKSNDQKHKTN 565
Q+Q QQ+ P Q QQ+ Q + PP+ SP+Q + PQ ND + + N
Sbjct: 1042 QQQPQQQPPPQQQQQQQQPQQQPPQQSPSQQPAPAQQQPPQF---------RNDSRQQFN 1092
Query: 566 DRRSETKVGKKS 577
R + + G++S
Sbjct: 1093 SGRDQERFGRRS 1104
>gi|46371741|gb|AAS90559.1| thisbe [Drosophila melanogaster]
Length = 748
Score = 40.4 bits (93), Expect = 0.37
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 505 EQKQRQQKTPRSQVQQKSQERTT--PPKPSPNQPQSAPNVNSPQAVVAPKSQTKSND--Q 560
+Q +++QK + Q QQ+ Q+R + P P P P +AP A +P + T+S
Sbjct: 264 QQHEKKQKRRKQQKQQQHQQRVSASPTNPMPATPTAAPAATPTVAATSPATATRSTTAAM 323
Query: 561 KHKTNDRRSETKVGKKS 577
K RR + KV K+
Sbjct: 324 SSKRKGRRRKAKVRPKA 340
>gi|52007927|ref|ZP_00335304.1| COG1530: Ribonucleases G and E
[Thiobacillus denitrificans ATCC 25259]
Length = 873
Score = 39.7 bits (91), Expect = 0.63
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 507 KQRQQKTPRSQVQQKSQERTTPPKPSPNQPQSAPNVN-SPQAVVAPKSQTKSNDQKHKTN 565
+ RQ + + +V++ E+ PP+P P QP+ P +P+A AP ++ + ++K +
Sbjct: 624 ESRQTEPRQPEVREPRAEQAKPPRP-PRQPKPRPEAEVAPRAATAPVAEEPAGEEKREPR 682
Query: 566 DRRSETKVGK 575
RR + G+
Sbjct: 683 SRRGRGRRGR 692
>gi|6752415|gb|AAF27718.1| PspA [Streptococcus pneumoniae]
Length = 480
Score = 39.7 bits (91), Expect = 0.63
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 518 VQQKSQERTTPPKPSPNQPQSAPNVNSPQAVVAPKSQTKSNDQKHKTNDRRSE 570
V +E T P P P++P AP N+ Q APK + ++ Q + RRSE
Sbjct: 395 VPDGGEEETPAPAPQPDEPAPAPAPNAEQPAPAPKPEKSADQQAEEDYARRSE 447
>gi|44984214|gb|AAS53180.1| AFL194Wp [Ashbya gossypii ATCC 10895]
ref|NP_985356.1| AFL194Wp [Eremothecium gossypii]
Length = 1168
Score = 39.3 bits (90), Expect = 0.83
Identities = 21/62 (33%), Positives = 31/62 (49%), Gaps = 2/62 (3%)
Query: 505 EQKQRQQKTPRSQVQQKSQERTTPPKP--SPNQPQSAPNVNSPQAVVAPKSQTKSNDQKH 562
+Q+Q+QQ+ P+SQ QQ+ Q++ + P+P P Q Q Q P QT Q
Sbjct: 392 QQQQQQQQQPQSQPQQQQQQQQSQPQPQQKPQQTQPQQQQQQTQQQTPPPQQTPPQQQAP 451
Query: 563 KT 564
T
Sbjct: 452 PT 453
Score = 39.3 bits (90), Expect = 0.83
Identities = 16/54 (29%), Positives = 33/54 (60%)
Query: 505 EQKQRQQKTPRSQVQQKSQERTTPPKPSPNQPQSAPNVNSPQAVVAPKSQTKSN 558
+ +Q+ Q+T Q QQ++Q++T PP+ +P Q Q+ P + P+ + + Q + +
Sbjct: 417 QPQQKPQQTQPQQQQQQTQQQTPPPQQTPPQQQAPPTLQKPKPQQSQQQQQQQS 470
>gi|55250418|gb|AAH85814.1| Special AT-rich sequence binding protein
1 (predicted) [Rattus norvegicus]
ref|NP_001012129.1| special AT-rich sequence binding protein 1 (predicted) [Rattus
norvegicus]
Length = 764
Score = 39.3 bits (90), Expect = 0.83
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 505 EQKQRQQKTPRSQVQQKSQERTTPPKPSPNQPQSAPNVNSPQAVVAPKSQT-KSNDQKHK 563
EQ Q+QQ+ + Q QQ+ Q PP+P P QPQ+ P + Q VA +++ + N QK +
Sbjct: 590 EQLQQQQQQQQQQ-QQQQQPPPPPPQPQP-QPQAGPRLPPRQPTVASSAESDEENRQKTR 647
Query: 564 TNDRRSETKVGKKSNF 579
+ S +G +F
Sbjct: 648 PRTKISVEALGILQSF 663
Database: /home/dicty1/resource/WorkingDBs//nr-clean
Posted date: Mar 10, 2005 12:10 PM
Number of letters in database: 788,375,511
Number of sequences in database: 2,329,665
Lambda K H
0.300 0.119 0.317
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 766,919,583
Number of Sequences: 2329665
Number of extensions: 18506901
Number of successful extensions: 93203
Number of sequences better than 1.0: 14
Number of HSP's better than 1.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 93006
Number of HSP's gapped (non-prelim): 79
length of query: 1333
length of database: 788,375,511
effective HSP length: 140
effective length of query: 1193
effective length of database: 462,222,411
effective search space: 551431336323
effective search space used: 551431336323
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 90 (39.3 bits)
BLASTP 2.2.1 [Jul-12-2001]