Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DDB0192053
(123 letters)
Database: /home/dicty1/resource/WorkingDBs//nr-clean
2,329,665 sequences; 788,375,511 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|55961121|emb|CAI13844.1| OTTHUMP00000022229 [Homo sapiens] 42 0.003
gi|55961120|emb|CAI13843.1| OTTHUMP00000022228 [Homo sapiens] >g... 42 0.003
gi|55961117|emb|CAI13840.1| OTTHUMP00000022230 [Homo sapiens] 42 0.003
gi|41222651|ref|XP_372143.1| PREDICTED: similar to C9orf119 prot... 42 0.003
gi|5731911|emb|CAB52605.1| SPBC409.03 [Schizosaccharomyces pombe... 42 0.003
gi|57092063|ref|XP_537826.1| PREDICTED: similar to C9orf119 prot... 40 0.015
gi|52350647|gb|AAH82799.1| Unknown (protein for MGC:105672) [Rat... 39 0.034
gi|50757444|ref|XP_425339.1| PREDICTED: similar to RIKEN cDNA 29... 39 0.034
gi|50380135|gb|AAT76305.1| curly protein [Gallus gallus] 39 0.034
gi|30424800|ref|NP_780399.1| RIKEN cDNA 2900010J23 [Mus musculus... 38 0.059
gi|48109766|ref|XP_396242.1| similar to ENSANGP00000017958 [Apis... 35 0.50
>gi|55961121|emb|CAI13844.1| OTTHUMP00000022229 [Homo sapiens]
Length = 162
Score = 42.0 bits (97), Expect = 0.003
Identities = 21/79 (26%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 41 ENIKKELQELQDEENQILKDLEPFXXXXXXXXXXXXRNLDKVHTYNEIKDATQNQIGKLA 100
E++ ++Q+L+++ + + K++ F ++ ++H YN+IKD Q +GKLA
Sbjct: 84 ESLHLDIQKLKEKRDMLDKEISQFVSEGYSVDELED-HITQLHEYNDIKDVGQMLMGKLA 142
Query: 101 EYEGVTIIQMTKKLGIFLN 119
GVT ++ + G+ +N
Sbjct: 143 VIRGVTTKELYPEFGLDMN 161
>gi|55961120|emb|CAI13843.1| OTTHUMP00000022228 [Homo sapiens]
gb|AAH29911.1| C9orf119 protein [Homo sapiens]
Length = 209
Score = 42.0 bits (97), Expect = 0.003
Identities = 21/79 (26%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 41 ENIKKELQELQDEENQILKDLEPFXXXXXXXXXXXXRNLDKVHTYNEIKDATQNQIGKLA 100
E++ ++Q+L+++ + + K++ F ++ ++H YN+IKD Q +GKLA
Sbjct: 131 ESLHLDIQKLKEKRDMLDKEISQFVSEGYSVDELED-HITQLHEYNDIKDVGQMLMGKLA 189
Query: 101 EYEGVTIIQMTKKLGIFLN 119
GVT ++ + G+ +N
Sbjct: 190 VIRGVTTKELYPEFGLDMN 208
>gi|55961117|emb|CAI13840.1| OTTHUMP00000022230 [Homo sapiens]
Length = 144
Score = 42.0 bits (97), Expect = 0.003
Identities = 21/79 (26%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 41 ENIKKELQELQDEENQILKDLEPFXXXXXXXXXXXXRNLDKVHTYNEIKDATQNQIGKLA 100
E++ ++Q+L+++ + + K++ F ++ ++H YN+IKD Q +GKLA
Sbjct: 66 ESLHLDIQKLKEKRDMLDKEISQFVSEGYSVDELED-HITQLHEYNDIKDVGQMLMGKLA 124
Query: 101 EYEGVTIIQMTKKLGIFLN 119
GVT ++ + G+ +N
Sbjct: 125 VIRGVTTKELYPEFGLDMN 143
>gi|41222651|ref|XP_372143.1| PREDICTED: similar to C9orf119 protein
[Homo sapiens]
Length = 211
Score = 42.0 bits (97), Expect = 0.003
Identities = 21/79 (26%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 41 ENIKKELQELQDEENQILKDLEPFXXXXXXXXXXXXRNLDKVHTYNEIKDATQNQIGKLA 100
E++ ++Q+L+++ + + K++ F ++ ++H YN+IKD Q +GKLA
Sbjct: 133 ESLHLDIQKLKEKRDMLDKEISQFVSEGYSVDELED-HITQLHEYNDIKDVGQMLMGKLA 191
Query: 101 EYEGVTIIQMTKKLGIFLN 119
GVT ++ + G+ +N
Sbjct: 192 VIRGVTTKELYPEFGLDMN 210
>gi|5731911|emb|CAB52605.1| SPBC409.03 [Schizosaccharomyces pombe]
dbj|BAC77072.1| swi5 protein [Schizosaccharomyces pombe]
dbj|BAC77071.1| Swi5 protein [Schizosaccharomyces pombe]
pir||T40431 hypothetical protein SPBC409.03 - fission yeast
(Schizosaccharomyces pombe)
ref|NP_595453.1| hypothetical protein [Schizosaccharomyces pombe]
sp|Q9UUB7|SWI5_SCHPO Mating-type switching protein swi5 (DNA repair protein swi5)
Length = 85
Score = 42.0 bits (97), Expect = 0.003
Identities = 16/40 (40%), Positives = 28/40 (70%)
Query: 77 RNLDKVHTYNEIKDATQNQIGKLAEYEGVTIIQMTKKLGI 116
+++D +HTYNEI+D IGK+AE+E T +++ + G+
Sbjct: 42 KHIDLLHTYNEIRDIALGMIGKVAEHEKCTSVELFDRFGV 81
>gi|57092063|ref|XP_537826.1| PREDICTED: similar to C9orf119 protein
[Canis familiaris]
Length = 149
Score = 39.7 bits (91), Expect = 0.015
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 36 LNYDIENIKKELQELQDEENQILKDLEPFXXXXXXXXXXXXRNLDKVHTYNEIKDATQNQ 95
L DI+ +K++ L E Q++ + ++ ++H YN+IKD Q
Sbjct: 73 LRLDIQKLKEKRDLLDKEITQLISE--------GYSVDELEDHISQLHEYNDIKDIGQML 124
Query: 96 IGKLAEYEGVTIIQMTKKLGIFLN 119
+GKLA GVT ++ + G+ +N
Sbjct: 125 LGKLAMIRGVTTKELYPEFGLEMN 148
>gi|52350647|gb|AAH82799.1| Unknown (protein for MGC:105672) [Rattus
norvegicus]
Length = 89
Score = 38.5 bits (88), Expect = 0.034
Identities = 22/71 (30%), Positives = 37/71 (51%), Gaps = 8/71 (11%)
Query: 36 LNYDIENIKKELQELQDEENQILKDLEPFXXXXXXXXXXXXRNLDKVHTYNEIKDATQNQ 95
LN DI+ +K++ L E +Q++ + +++ +H YN+IKD +Q
Sbjct: 13 LNSDIQKLKEKQDMLDKEISQLIAE--------GYRVIELEQHISLLHEYNDIKDVSQML 64
Query: 96 IGKLAEYEGVT 106
+GKLA GVT
Sbjct: 65 LGKLAVTRGVT 75
>gi|50757444|ref|XP_425339.1| PREDICTED: similar to RIKEN cDNA
2900010J23 [Gallus gallus]
Length = 176
Score = 38.5 bits (88), Expect = 0.034
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 77 RNLDKVHTYNEIKDATQNQIGKLAEYEGVTIIQMTKKLGIFLN 119
+++ +H YNEIKDA Q +GKLA GVT Q+ + + LN
Sbjct: 133 KHISLLHEYNEIKDAGQMLLGKLAVIRGVTTKQLYPEYDLELN 175
>gi|50380135|gb|AAT76305.1| curly protein [Gallus gallus]
Length = 70
Score = 38.5 bits (88), Expect = 0.034
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 77 RNLDKVHTYNEIKDATQNQIGKLAEYEGVTIIQMTKKLGIFLN 119
+++ +H YNEIKDA Q +GKLA GVT Q+ + + LN
Sbjct: 27 KHISLLHEYNEIKDAGQMLLGKLAVIRGVTTKQLYPEYDLELN 69
>gi|30424800|ref|NP_780399.1| RIKEN cDNA 2900010J23 [Mus musculus]
gb|AAH21748.1| RIKEN cDNA 2900010J23 [Mus musculus]
dbj|BAC25409.1| unnamed protein product [Mus musculus]
Length = 89
Score = 37.7 bits (86), Expect = 0.059
Identities = 23/84 (27%), Positives = 42/84 (49%), Gaps = 8/84 (9%)
Query: 36 LNYDIENIKKELQELQDEENQILKDLEPFXXXXXXXXXXXXRNLDKVHTYNEIKDATQNQ 95
L+ DI+ +K++ L E +Q++ + +++ +H YN+IKD +Q
Sbjct: 13 LSSDIKKLKEKHDMLDKEISQLIAE--------GYRVIELEKHISLLHEYNDIKDVSQML 64
Query: 96 IGKLAEYEGVTIIQMTKKLGIFLN 119
+GKLA GVT ++ + LN
Sbjct: 65 LGKLAVTRGVTTKELYPDFDLNLN 88
>gi|48109766|ref|XP_396242.1| similar to ENSANGP00000017958 [Apis
mellifera]
Length = 749
Score = 34.7 bits (78), Expect = 0.50
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 79 LDKVHTYNEIKDATQNQIGKLAEYEGVTIIQMTKKLGI 116
+D +H YNEIKD TQ IG +A TI + + G+
Sbjct: 74 MDLLHKYNEIKDVTQMVIGAIAVLNNTTIKNLYDQYGL 111
Database: /home/dicty1/resource/WorkingDBs//nr-clean
Posted date: Mar 10, 2005 12:10 PM
Number of letters in database: 788,375,511
Number of sequences in database: 2,329,665
Lambda K H
0.309 0.132 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147,039,698
Number of Sequences: 2329665
Number of extensions: 4360610
Number of successful extensions: 12972
Number of sequences better than 1.0: 11
Number of HSP's better than 1.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12962
Number of HSP's gapped (non-prelim): 11
length of query: 123
length of database: 788,375,511
effective HSP length: 99
effective length of query: 24
effective length of database: 557,738,676
effective search space: 13385728224
effective search space used: 13385728224
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 76 (33.9 bits)
BLASTP 2.2.1 [Jul-12-2001]