Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DDB0189388
(564 letters)
Database: /home/dicty1/resource/WorkingDBs//nr-clean
2,329,665 sequences; 788,375,511 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|39577681|gb|AAR28448.1| Vps4p [Pichia angusta] 49 5e-04
gi|46442522|gb|EAL01811.1| potential vacuolar sorting ATPase [Ca... 48 9e-04
gi|46442656|gb|EAL01944.1| potential vacuolar sorting ATPase [Ca... 47 0.001
gi|49655406|emb|CAG87974.1| unnamed protein product [Debaryomyce... 46 0.003
gi|56757317|gb|AAW26830.1| unknown [Schistosoma japonicum] 45 0.007
gi|50749825|ref|XP_421772.1| PREDICTED: similar to actin-binding... 44 0.010
gi|40363543|ref|NP_954687.1| four and a half LIM domains [Danio ... 44 0.016
gi|54400313|dbj|BAD66671.1| four-and-a-half LIM domain protein 5... 44 0.016
gi|32413497|ref|XP_327228.1| hypothetical protein [Neurospora cr... 43 0.028
gi|6325431|ref|NP_015499.1| Defective in vacuolar protein sortin... 42 0.037
gi|49526839|emb|CAG60466.1| unnamed protein product [Candida gla... 42 0.037
gi|13384125|gb|AAK21278.1| vacuolar sorting protein 4 [Candida g... 42 0.037
gi|1054845|emb|CAA63364.1| END13 [Saccharomyces cerevisiae] 42 0.048
gi|57087187|ref|XP_536805.1| PREDICTED: similar to vacuolar prot... 42 0.062
gi|49654095|emb|CAG86511.1| unnamed protein product [Debaryomyce... 42 0.062
gi|48096031|ref|XP_392384.1| similar to ENSANGP00000018935 [Apis... 42 0.062
gi|39583313|emb|CAE60105.1| Hypothetical protein CBG03641 [Caeno... 42 0.062
gi|1019404|emb|CAA91171.1| SPAC2G11.06 [Schizosaccharomyces pomb... 41 0.082
gi|44983237|gb|AAS52419.1| AEL265Wp [Ashbya gossypii ATCC 10895]... 41 0.082
gi|50256627|gb|EAL19350.1| hypothetical protein CNBH0440 [Crypto... 41 0.082
gi|46101952|gb|EAK87185.1| hypothetical protein UM06412.1 [Ustil... 41 0.082
gi|50304123|ref|XP_452011.1| unnamed protein product [Kluyveromy... 41 0.082
gi|7019569|ref|NP_037377.1| vacuolar protein sorting factor 4A [... 41 0.11
gi|27716129|ref|XP_233499.1| similar to four and half LIM domain... 41 0.11
gi|57096576|ref|XP_532553.1| PREDICTED: similar to Splicing fact... 41 0.11
gi|54645820|gb|EAL34558.1| GA16596-PA [Drosophila pseudoobscura] 41 0.11
gi|30526305|gb|AAP32084.1| four and a half LIM domains 3 [Sus sc... 41 0.11
gi|2804415|gb|AAB97536.1| Hypothetical protein C34B2.4 [Caenorha... 41 0.11
gi|37894600|gb|AAF21428.2| salt-induced AAA-Type ATPase [Mesembr... 41 0.11
gi|18568119|gb|AAL75948.1| SKD2 protein [Homo sapiens] 41 0.11
gi|6563218|gb|AAF17203.1| SKD1 protein [Homo sapiens] 41 0.11
gi|38731682|gb|AAR27433.1| four and a half LIM domains 3 [Sus sc... 41 0.11
gi|5381417|gb|AAD42971.1| vacuolar sorting protein 4 [Homo sapiens] 41 0.11
gi|3360516|gb|AAC69756.1| LIM-domain protein [Branchiostoma flor... 41 0.11
gi|47225333|emb|CAG09833.1| unnamed protein product [Tetraodon n... 41 0.11
gi|47221920|emb|CAF98932.1| unnamed protein product [Tetraodon n... 41 0.11
gi|39579749|emb|CAE56517.1| Hypothetical protein CBG24239 [Caeno... 41 0.11
gi|15680277|gb|AAH14501.1| FHL3 protein [Homo sapiens] 40 0.14
gi|12655007|gb|AAH01351.1| Four and a half LIM domains 3 [Homo s... 40 0.14
gi|30584447|gb|AAP36476.1| Homo sapiens four and a half LIM doma... 40 0.14
gi|55586844|ref|XP_513331.1| PREDICTED: similar to four and a ha... 40 0.14
gi|6753868|ref|NP_034343.1| four and a half LIM domains 3 [Mus m... 40 0.14
gi|51173715|ref|NP_001003408.1| actin-binding LIM protein 1 isof... 40 0.14
gi|21728408|ref|NP_663711.1| vacuolar protein sorting 4a [Rattus... 40 0.14
gi|3880693|emb|CAA15978.1| Hypothetical protein Y1A5A.1 [Caenorh... 40 0.14
gi|47481731|gb|AAH70931.1| Vps4a protein [Rattus norvegicus] 40 0.14
gi|55859666|emb|CAI10909.1| actin binding LIM protein 1 [Homo sa... 40 0.14
gi|39595823|emb|CAE67326.1| Hypothetical protein CBG12788 [Caeno... 40 0.14
gi|48146967|emb|CAG33706.1| FHL3 [Homo sapiens] 40 0.14
gi|40744456|gb|EAA63632.1| hypothetical protein AN3061.2 [Asperg... 40 0.18
gi|46097053|gb|EAK82286.1| hypothetical protein UM01669.1 [Ustil... 40 0.18
gi|7381058|gb|AAF61376.1| LIM-only protein FHL3 [Homo sapiens] 40 0.18
gi|47216805|emb|CAG10127.1| unnamed protein product [Tetraodon n... 40 0.18
gi|2773175|gb|AAB96695.1| Hypothetical protein F33D11.1 [Caenorh... 40 0.24
gi|41053804|ref|NP_957191.1| hypothetical protein MGC77740 [Dani... 40 0.24
gi|51768229|ref|XP_138922.3| similar to SKD1 [Mus musculus] 40 0.24
gi|5441369|emb|CAB46728.1| ZASP protein [Homo sapiens] 40 0.24
gi|47208159|emb|CAF93402.1| unnamed protein product [Tetraodon n... 40 0.24
gi|24585205|ref|NP_523601.2| CG31794-PA, isoform A [Drosophila m... 39 0.31
gi|55237161|gb|EAA12524.3| ENSANGP00000011015 [Anopheles gambiae... 39 0.31
gi|55242499|gb|EAA44965.2| ENSANGP00000023717 [Anopheles gambiae... 39 0.31
gi|34880751|ref|XP_341136.1| similar to LIM-homeobox protein [Ra... 39 0.31
gi|57092835|ref|XP_531773.1| PREDICTED: similar to four and a ha... 39 0.31
gi|50254898|gb|EAL17638.1| hypothetical protein CNBL1530 [Crypto... 39 0.31
gi|24585209|ref|NP_724187.1| CG31794-PE, isoform E [Drosophila m... 39 0.31
gi|24585203|ref|NP_724185.1| CG31794-PB, isoform B [Drosophila m... 39 0.31
gi|24585201|ref|NP_724184.1| CG31794-PF, isoform F [Drosophila m... 39 0.31
gi|54644592|gb|EAL33333.1| GA16481-PA [Drosophila pseudoobscura] 39 0.31
gi|51703541|gb|AAH81138.1| MGC84050 protein [Xenopus laevis] 39 0.31
gi|21593336|gb|AAM65285.1| putative ATPase [Arabidopsis thaliana] 39 0.31
gi|49646836|emb|CAG83223.1| unnamed protein product [Yarrowia li... 39 0.31
gi|21483570|gb|AAM52760.1| SD04793p [Drosophila melanogaster] 39 0.31
gi|50730480|ref|XP_416924.1| PREDICTED: similar to four and a ha... 39 0.31
gi|20197659|gb|AAM15184.1| putative ATPase [Arabidopsis thaliana... 39 0.31
gi|8131974|gb|AAF73159.1| LIM protein FHL3 [Mus musculus] 39 0.31
gi|57228597|gb|AAW45032.1| conserved hypothetical protein [Crypt... 39 0.31
gi|14669824|dbj|BAB62005.1| paxillin-derived LIM-only protein [D... 39 0.31
gi|14669808|dbj|BAB33159.2| paxillin [Drosophila melanogaster] 39 0.31
gi|47219735|emb|CAG12657.1| unnamed protein product [Tetraodon n... 39 0.31
gi|11321422|gb|AAG34161.1| focal contact protein paxillin [Droso... 39 0.31
gi|23396870|sp|Q9R059|SLIM2_MOUSE Skeletal muscle LIM-protein 2 ... 39 0.31
gi|6677981|ref|NP_033216.1| vacuolar protein sorting 4b [Mus mus... 39 0.40
gi|13277834|gb|AAH03799.1| Vacuolar protein sorting 4b [Mus musc... 39 0.40
gi|34878783|ref|XP_341108.1| similar to SKD1 [Rattus norvegicus] 39 0.40
gi|33589342|gb|AAQ22438.1| RE64941p [Drosophila melanogaster] >g... 39 0.40
gi|45553163|ref|NP_996109.1| CG32171-PH, isoform H [Drosophila m... 39 0.40
gi|54641566|gb|EAL30316.1| GA16731-PA [Drosophila pseudoobscura] 39 0.40
gi|55770195|ref|XP_550087.1| putative p60 katanin [Oryza sativa ... 39 0.40
gi|55647529|ref|XP_523954.1| PREDICTED: similar to vacuolar prot... 39 0.40
gi|34895696|ref|NP_909197.1| putative AAA-type ATPase [Oryza sat... 39 0.40
gi|22652796|gb|AAN03820.1| AAA-ATPase-like protein [Oryza sativa... 39 0.40
gi|5441371|emb|CAB46729.1| ZASP protein [Homo sapiens] 39 0.40
gi|45592959|ref|NP_009009.1| LIM domain binding 3 [Homo sapiens] 39 0.40
gi|3327040|dbj|BAA31588.1| KIAA0613 protein [Homo sapiens] 39 0.40
gi|55665409|emb|CAH70853.1| filamin-binding LIM protein-1 (FBLP-... 39 0.53
gi|24645467|ref|NP_731391.1| CG31332-PA, isoform A [Drosophila m... 39 0.53
gi|57085155|ref|XP_536411.1| PREDICTED: similar to mKIAA0613 pro... 39 0.53
gi|28573136|ref|NP_731392.2| CG31332-PB, isoform B [Drosophila m... 39 0.53
gi|24645465|ref|NP_731390.1| CG31332-PC, isoform C [Drosophila m... 39 0.53
gi|28573138|ref|NP_731389.2| CG31332-PD, isoform D [Drosophila m... 39 0.53
gi|45550723|ref|NP_649930.4| CG31352-PA [Drosophila melanogaster... 39 0.53
gi|50510545|dbj|BAD32258.1| mKIAA0613 protein [Mus musculus] 39 0.53
gi|28144147|gb|AAO26190.1| PDZ-LIM protein cypher3s [Mus musculus] 39 0.53
gi|28144145|gb|AAO26189.1| PDZ-LIM protein cypher1s [Mus musculus] 39 0.53
gi|28144143|gb|AAO26188.1| PDZ-LIM protein cypher3c [Mus musculus] 39 0.53
gi|11612596|gb|AAD42950.2| PDZ-LIM protein cypher1c [Mus musculu... 39 0.53
gi|50747966|ref|XP_421060.1| PREDICTED: similar to leupaxin [Gal... 39 0.53
gi|55732104|emb|CAH92758.1| hypothetical protein [Pongo pygmaeus] 39 0.53
gi|6969631|gb|AAF33848.1| oracle 2 protein [Mus musculus] 39 0.53
gi|6969629|gb|AAF33847.1| oracle 1 protein [Mus musculus] 39 0.53
gi|7963882|gb|AAF71368.1| neuronal specific transcription factor... 39 0.53
gi|47229955|emb|CAG10369.1| unnamed protein product [Tetraodon n... 39 0.53
gi|39589329|emb|CAE74358.1| Hypothetical protein CBG22081 [Caeno... 39 0.53
gi|37926025|gb|AAP59551.1| cell migration-inducing 1 [Homo sapie... 38 0.69
gi|29841364|gb|AAP06396.1| similar to NM_031677 four and a half ... 38 0.69
gi|34189286|gb|AAH09692.1| VPS4B protein [Homo sapiens] 38 0.69
gi|21666433|gb|AAM73706.1| actin-binding LIM protein 1 medium is... 38 0.69
gi|51173713|ref|NP_001003407.1| actin-binding LIM protein 1 isof... 38 0.69
gi|51871614|ref|NP_001004112.1| zgc:92375 [Danio rerio] >gi|5126... 38 0.69
gi|3879677|emb|CAA90991.1| Hypothetical protein T11B7.4d [Caenor... 38 0.69
gi|37936023|emb|CAE52902.1| Hypothetical protein T11B7.4c [Caeno... 38 0.69
gi|37936025|emb|CAB54312.2| Hypothetical protein T11B7.4b [Caeno... 38 0.69
gi|55859665|emb|CAI10908.1| actin binding LIM protein 1 [Homo sa... 38 0.69
gi|55859664|emb|CAI10907.1| actin binding LIM protein 1 [Homo sa... 38 0.69
gi|55859663|emb|CAI10906.1| actin binding LIM protein 1 [Homo sa... 38 0.69
gi|50759730|ref|XP_417754.1| PREDICTED: similar to four and a ha... 38 0.69
gi|50754862|ref|XP_414527.1| PREDICTED: similar to actin binding... 38 0.69
gi|50744680|ref|XP_419829.1| PREDICTED: similar to LIM-only prot... 38 0.69
gi|28972049|dbj|BAC65478.1| mKIAA0059 protein [Mus musculus] 38 0.69
gi|20522012|dbj|BAA06681.2| KIAA0059 [Homo sapiens] 38 0.69
gi|3329390|gb|AAC39874.1| SKD1 homolog [Homo sapiens] 38 0.69
gi|2337952|gb|AAC51676.1| actin-binding double-zinc-finger prote... 38 0.69
gi|7511566|pir||T19157 probable metal binding protein T11B7.4b -... 38 0.69
gi|56404432|sp|O14639|ALM1_HUMAN Actin-binding LIM protein 1 (Ac... 38 0.69
gi|55957481|emb|CAI16879.1| LIM homeobox 3 [Homo sapiens] >gi|30... 38 0.90
gi|38016178|ref|NP_848803.2| actin-binding LIM protein 1 [Mus mu... 38 0.90
gi|55957480|emb|CAI16878.1| LIM homeobox 3 [Homo sapiens] >gi|76... 38 0.90
gi|50749126|ref|XP_421495.1| PREDICTED: similar to PDZ-LIM prote... 38 0.90
gi|4091889|gb|AAC99331.1| LIM homeodomain transcription factor [... 38 0.90
gi|20502369|dbj|BAB91364.1| LIM homeodomain protein [Branchiosto... 38 0.90
gi|6137602|pdb|1CXX|A Chain A, Mutant R122a Of Quail Cysteine An... 38 0.90
>gi|39577681|gb|AAR28448.1| Vps4p [Pichia angusta]
Length = 439
Score = 48.5 bits (114), Expect = 5e-04
Identities = 28/69 (40%), Positives = 36/69 (51%)
Query: 2 SSEILQTGLQLVKSAIDADNQKNYSLACNLYDQAVLNLKLALVAEREPSKNALISSKIEE 61
+SE L G+ LVK AI+AD+ Y A LY + L LAL E+ P I SK E
Sbjct: 4 ASEFLDKGVDLVKKAIEADSTSKYDEAYRLYYNGLDYLMLALKYEKNPKSKETIRSKFTE 63
Query: 62 YSQRNKFIK 70
Y R + +K
Sbjct: 64 YLSRAEQLK 72
>gi|46442522|gb|EAL01811.1| potential vacuolar sorting ATPase
[Candida albicans SC5314]
Length = 439
Score = 47.8 bits (112), Expect = 9e-04
Identities = 26/69 (37%), Positives = 36/69 (51%)
Query: 2 SSEILQTGLQLVKSAIDADNQKNYSLACNLYDQAVLNLKLALVAEREPSKNALISSKIEE 61
+S+ L G+ LV+ AIDAD Y A LY + L LA+ E+ P L+ SK E
Sbjct: 4 ASDFLSKGIDLVQKAIDADTATRYEEAYKLYYNGLDYLMLAIKYEKNPKSKELVKSKFTE 63
Query: 62 YSQRNKFIK 70
Y R + +K
Sbjct: 64 YLTRAEQLK 72
>gi|46442656|gb|EAL01944.1| potential vacuolar sorting ATPase
[Candida albicans SC5314]
Length = 439
Score = 47.4 bits (111), Expect = 0.001
Identities = 26/68 (38%), Positives = 35/68 (51%)
Query: 3 SEILQTGLQLVKSAIDADNQKNYSLACNLYDQAVLNLKLALVAEREPSKNALISSKIEEY 62
S+ L G+ LV+ AIDAD Y A LY + L LA+ E+ P L+ SK EY
Sbjct: 5 SDFLSKGIDLVQKAIDADTATRYEEAYKLYYNGLDYLMLAIKYEKNPKSKELVKSKFTEY 64
Query: 63 SQRNKFIK 70
R + +K
Sbjct: 65 LTRAEQLK 72
>gi|49655406|emb|CAG87974.1| unnamed protein product [Debaryomyces
hansenii CBS767]
ref|XP_459738.1| unnamed protein product [Debaryomyces hansenii]
Length = 429
Score = 45.8 bits (107), Expect = 0.003
Identities = 27/69 (39%), Positives = 35/69 (50%)
Query: 2 SSEILQTGLQLVKSAIDADNQKNYSLACNLYDQAVLNLKLALVAEREPSKNALISSKIEE 61
+S+ L G+ LV+ AIDAD Y A LY + L LAL E+ LI SK E
Sbjct: 4 ASDFLSKGIDLVQKAIDADTATRYEEAYKLYYNGLDYLMLALKYEKNQKSKELIKSKFTE 63
Query: 62 YSQRNKFIK 70
Y R + +K
Sbjct: 64 YLTRAEQLK 72
>gi|56757317|gb|AAW26830.1| unknown [Schistosoma japonicum]
Length = 433
Score = 44.7 bits (104), Expect = 0.007
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 190 EEEVKNYRGASQCYEEACNYYLMAIKSE-PDPTLKKNLSDEAKIYLDRIEVLKPFAAS 246
E++ KNY A + YE A Y++ AIK E P K+++ YLDR E +K + AS
Sbjct: 16 EDKAKNYEEALKLYEHAIEYFIHAIKYEAPSDRAKESIQSSCARYLDRAEQIKKYMAS 73
>gi|50749825|ref|XP_421772.1| PREDICTED: similar to actin-binding
LIM protein 1 long isoform [Gallus gallus]
Length = 213
Score = 44.3 bits (103), Expect = 0.010
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Query: 347 GDKCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMC 406
G KC AC ++ ++A D+++H C + C+ C + F + ++ + +HP C
Sbjct: 113 GVKCEACHQFITGKVLEAGDKHYHPSCAR----CSRCNQMFT-EGEEMYLQGSTVWHPDC 167
Query: 407 FESTTGLSQEEIRTFVGSSKQLFFSIQLQRKFYRAGETIQFGFTIDNG 454
+ST +++++R SS + F+ L + R+ E F++DNG
Sbjct: 168 KQSTK--TEDKLR---HSSSEFFYPKSLVLRRPRSAEVCCCVFSVDNG 210
>gi|40363543|ref|NP_954687.1| four and a half LIM domains [Danio
rerio]
gb|AAH53279.1| Four and a half LIM domains [Danio rerio]
Length = 280
Score = 43.5 bits (101), Expect = 0.016
Identities = 19/62 (30%), Positives = 33/62 (52%), Gaps = 6/62 (9%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMCFE 408
+CA C ++T + D+ WH+ECF +C+ C+KP L+ + + Y C++
Sbjct: 161 QCACCKKPITTGGVNYQDQPWHSECF----VCSSCRKP--LAGTRFTSHEEKVYCVDCYK 214
Query: 409 ST 410
ST
Sbjct: 215 ST 216
>gi|54400313|dbj|BAD66671.1| four-and-a-half LIM domain protein 5
[Anguilla japonica]
Length = 280
Score = 43.5 bits (101), Expect = 0.016
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 350 CAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMCFES 409
CA C ++T I D+ WH+ECF +C+ C+KP L+ ++++ Y CF++
Sbjct: 162 CACCKEAITTGGITYQDQPWHSECF----VCSTCRKP--LAGTRFTAQEDKVYCVDCFKT 215
Query: 410 T 410
+
Sbjct: 216 S 216
>gi|32413497|ref|XP_327228.1| hypothetical protein [Neurospora
crassa]
gb|EAA28812.1| hypothetical protein [Neurospora crassa]
Length = 441
Score = 42.7 bits (99), Expect = 0.028
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 2 SSEILQTGLQLVKSAIDADNQKNYSLACNLYDQAVLNLKLALVAEREPSKNALISSKIEE 61
+++ L ++ V+ AI+ADN Y A LY Q++ LAL E+ P +I +K E
Sbjct: 3 NTDFLGRAIEQVRKAIEADNAAQYDKAYQLYYQSLELFMLALKWEKNPKSKEMIRAKTGE 62
Query: 62 YSQRNKFIK 70
Y R + +K
Sbjct: 63 YMDRAEKLK 71
>gi|6325431|ref|NP_015499.1| Defective in vacuolar protein
sorting; homologous to mouse SKD1 and to human hVPS4;
AAA-type ATPase [Saccharomyces cerevisiae]
pir||S59831 END13 protein - yeast (Saccharomyces cerevisiae)
gb|AAB68107.1| Similar to several members of the Cdc48/Pas1/Sec18 family of
proteins (Swiss Prot. accession numbers P25694, P24004,
P18759)
sp|P52917|VPS4_YEAST Vacuolar protein sorting-associated protein VPS4 (END13 protein)
(DOA4-independent degradation protein 6)
Length = 437
Score = 42.4 bits (98), Expect = 0.037
Identities = 24/69 (34%), Positives = 34/69 (48%)
Query: 2 SSEILQTGLQLVKSAIDADNQKNYSLACNLYDQAVLNLKLALVAEREPSKNALISSKIEE 61
+ + L G++LV+ AID D Y A Y + L LAL E+ P LI +K E
Sbjct: 3 TGDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTE 62
Query: 62 YSQRNKFIK 70
Y R + +K
Sbjct: 63 YLNRAEQLK 71
>gi|49526839|emb|CAG60466.1| unnamed protein product [Candida
glabrata CBS138]
ref|XP_447529.1| unnamed protein product [Candida glabrata]
Length = 432
Score = 42.4 bits (98), Expect = 0.037
Identities = 24/69 (34%), Positives = 34/69 (48%)
Query: 2 SSEILQTGLQLVKSAIDADNQKNYSLACNLYDQAVLNLKLALVAEREPSKNALISSKIEE 61
+ + L G+ LV+ AI+ D Y A Y + L LAL E+ P LI +K E
Sbjct: 3 TGDFLSKGIDLVQKAIEYDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKELIRAKFTE 62
Query: 62 YSQRNKFIK 70
Y QR + +K
Sbjct: 63 YLQRAEQLK 71
>gi|13384125|gb|AAK21278.1| vacuolar sorting protein 4 [Candida
glabrata]
Length = 226
Score = 42.4 bits (98), Expect = 0.037
Identities = 24/69 (34%), Positives = 34/69 (48%)
Query: 2 SSEILQTGLQLVKSAIDADNQKNYSLACNLYDQAVLNLKLALVAEREPSKNALISSKIEE 61
+ + L G+ LV+ AI+ D Y A Y + L LAL E+ P LI +K E
Sbjct: 3 TGDFLSKGIDLVQKAIEYDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKELIRAKFTE 62
Query: 62 YSQRNKFIK 70
Y QR + +K
Sbjct: 63 YLQRAEQLK 71
>gi|1054845|emb|CAA63364.1| END13 [Saccharomyces cerevisiae]
Length = 437
Score = 42.0 bits (97), Expect = 0.048
Identities = 24/69 (34%), Positives = 34/69 (48%)
Query: 2 SSEILQTGLQLVKSAIDADNQKNYSLACNLYDQAVLNLKLALVAEREPSKNALISSKIEE 61
+ + L G++LV+ AID D Y A Y + L LAL E+ P LI +K E
Sbjct: 3 TGDFLTKGIELVQKAIDLDTATQYEEAYTSYYNGLDYLMLALKYEKNPKSKDLIRAKFTE 62
Query: 62 YSQRNKFIK 70
Y R + +K
Sbjct: 63 YLNRAEQLK 71
>gi|57087187|ref|XP_536805.1| PREDICTED: similar to vacuolar protein
sorting 4a [Canis familiaris]
Length = 523
Score = 41.6 bits (96), Expect = 0.062
Identities = 23/68 (33%), Positives = 37/68 (53%), Gaps = 1/68 (1%)
Query: 177 YEAAKNFSLKGRKEEEVKNYRGASQCYEEACNYYLMAIKSEP-DPTLKKNLSDEAKIYLD 235
++ A + K +E++ KNY A + Y+ A Y+L AIK E K+++ + YLD
Sbjct: 83 FQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKCMQYLD 142
Query: 236 RIEVLKPF 243
R E LK +
Sbjct: 143 RAEKLKDY 150
>gi|49654095|emb|CAG86511.1| unnamed protein product [Debaryomyces
hansenii CBS767]
ref|XP_458429.1| unnamed protein product [Debaryomyces hansenii]
Length = 1390
Score = 41.6 bits (96), Expect = 0.062
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Query: 340 SLPLTFSGDKCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFA-----LSNLSL 394
S+P T + D C C + + I+ ++ WH +CF IC C KP A +S L+
Sbjct: 675 SIP-TNATDSCQTCVKSIEKSCIRLDNKRWHTKCF----ICYNCSKPIASVRATISQLAY 729
Query: 395 KVKDNRAYHPMCF 407
+ +++ Y CF
Sbjct: 730 NISNSQVYCTECF 742
>gi|48096031|ref|XP_392384.1| similar to ENSANGP00000018935 [Apis
mellifera]
Length = 325
Score = 41.6 bits (96), Expect = 0.062
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMCFE 408
KC C+ + N I AL+ WH +CF +C C+KP +S S + + P C
Sbjct: 173 KCGGCNRAIMENYISALNSQWHPDCF----VCRDCKKP--VSGKSFYAMEGKPVCPKCVG 226
Query: 409 STTGLSQEE 417
+EE
Sbjct: 227 VDDDEEEEE 235
>gi|39583313|emb|CAE60105.1| Hypothetical protein CBG03641
[Caenorhabditis briggsae]
Length = 136
Score = 41.6 bits (96), Expect = 0.062
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMC 406
KCA C L + ALDR+WH CF C+ C +P L N + D++ Y C
Sbjct: 68 KCAGCQETLVDTCLLALDRHWHPRCF----TCSSCNRP--LPNGEFYLVDDKPYDLDC 119
>gi|1019404|emb|CAA91171.1| SPAC2G11.06 [Schizosaccharomyces
pombe]
pir||S62461 probable AAA-family ATPase, supressor protein - fission yeast
(Schizosaccharomyces pombe)
ref|NP_593086.1| putative AAA-family ATPase [Schizosaccharomyces pombe]
sp|Q09803|SKD1_SCHPO Suppressor protein of bem1/bed5 double mutants
gb|AAA35347.1| supressor protein
Length = 432
Score = 41.2 bits (95), Expect = 0.082
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 4 EILQTGLQLVKSAIDADNQKNYSLACNLYDQAVLNLKLALVAEREPSKNALISSKIEEYS 63
+ L + LVK+AID DN + Y A Y A+ +AL E+ +I SK+ EY
Sbjct: 5 DCLSKAISLVKTAIDNDNAEQYPDAYKYYQSALDYFMMALKYEKNEKSKEIIRSKVIEYL 64
Query: 64 QRNKFIK 70
R + +K
Sbjct: 65 DRAEKLK 71
>gi|44983237|gb|AAS52419.1| AEL265Wp [Ashbya gossypii ATCC 10895]
ref|NP_984595.1| AEL265Wp [Eremothecium gossypii]
Length = 431
Score = 41.2 bits (95), Expect = 0.082
Identities = 23/69 (33%), Positives = 34/69 (48%)
Query: 2 SSEILQTGLQLVKSAIDADNQKNYSLACNLYDQAVLNLKLALVAEREPSKNALISSKIEE 61
+ + L G++L++ AID D Y A Y + L LAL E+ P LI +K E
Sbjct: 3 TGDFLGKGIELIQKAIDLDTATQYQDAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTE 62
Query: 62 YSQRNKFIK 70
Y R + +K
Sbjct: 63 YLSRAEQLK 71
>gi|50256627|gb|EAL19350.1| hypothetical protein CNBH0440
[Cryptococcus neoformans var. neoformans B-3501A]
gb|AAW45476.1| ATPase, putative [Cryptococcus neoformans var. neoformans JEC21]
ref|XP_572783.1| ATPase, putative [Cryptococcus neoformans var. neoformans JEC21]
Length = 439
Score = 41.2 bits (95), Expect = 0.082
Identities = 23/57 (40%), Positives = 36/57 (62%), Gaps = 1/57 (1%)
Query: 190 EEEVK-NYRGASQCYEEACNYYLMAIKSEPDPTLKKNLSDEAKIYLDRIEVLKPFAA 245
+E+VK NY A + Y++A +Y++MA+K E + LK+ + + YLDR E LK A
Sbjct: 19 DEDVKQNYAEAYKQYQDALDYFMMAMKYEKNDKLKELIRKKFTEYLDRAEKLKEHIA 75
Score = 38.5 bits (88), Expect = 0.53
Identities = 22/69 (31%), Positives = 34/69 (48%)
Query: 2 SSEILQTGLQLVKSAIDADNQKNYSLACNLYDQAVLNLKLALVAEREPSKNALISSKIEE 61
+S L + LV+ AID D ++NY+ A Y A+ +A+ E+ LI K E
Sbjct: 3 NSNFLDKAIALVQKAIDEDVKQNYAEAYKQYQDALDYFMMAMKYEKNDKLKELIRKKFTE 62
Query: 62 YSQRNKFIK 70
Y R + +K
Sbjct: 63 YLDRAEKLK 71
>gi|46101952|gb|EAK87185.1| hypothetical protein UM06412.1 [Ustilago
maydis 521]
ref|XP_404027.1| hypothetical protein UM06412.1 [Ustilago maydis 521]
Length = 1037
Score = 41.2 bits (95), Expect = 0.082
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMCFE 408
+C C + + I AL WH ECF C C KPF + VKD R Y C++
Sbjct: 977 RCNGCKKPVLGDLISALRAKWHPECF----TCCSCDKPF--EDTMFFVKDGRPYDEACYK 1030
>gi|50304123|ref|XP_452011.1| unnamed protein product
[Kluyveromyces lactis]
emb|CAH02404.1| unnamed protein product [Kluyveromyces lactis NRRL Y-1140]
Length = 430
Score = 41.2 bits (95), Expect = 0.082
Identities = 23/69 (33%), Positives = 33/69 (47%)
Query: 2 SSEILQTGLQLVKSAIDADNQKNYSLACNLYDQAVLNLKLALVAEREPSKNALISSKIEE 61
+ + L G+ L++ AID D Y A Y + L LAL E+ P LI +K E
Sbjct: 3 TGDFLTKGIDLIQKAIDLDTATQYDEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTE 62
Query: 62 YSQRNKFIK 70
Y R + +K
Sbjct: 63 YLNRAEQLK 71
>gi|7019569|ref|NP_037377.1| vacuolar protein sorting factor 4A
[Homo sapiens]
gb|AAG01470.1| vacuolar protein sorting factor 4A [Homo sapiens]
gb|AAH47932.1| Vacuolar protein sorting factor 4A [Homo sapiens]
gb|AAD49227.1| SKD1-homolog [Homo sapiens]
gb|AAK52408.1| vacuolar protein sorting VPS4-1 [Homo sapiens]
Length = 437
Score = 40.8 bits (94), Expect = 0.11
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 186 KGRKEEEVKNYRGASQCYEEACNYYLMAIKSEP-DPTLKKNLSDEAKIYLDRIEVLKPFA 244
K +E++ KNY A + Y+ A Y+L AIK E K+++ + YLDR E LK +
Sbjct: 15 KATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKCVQYLDRAEKLKDYL 74
Query: 245 AS 246
S
Sbjct: 75 RS 76
>gi|27716129|ref|XP_233499.1| similar to four and half LIM domain
protein 3 [Rattus norvegicus]
Length = 288
Score = 40.8 bits (94), Expect = 0.11
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMCF 407
+CA C L+ + D+ WH EC ++C GCQ P L+ +D+ Y CF
Sbjct: 161 RCARCSKTLTQGGVTYRDQPWHREC----LVCTGCQTP--LAGQQFTSRDDDPYCVACF 213
>gi|57096576|ref|XP_532553.1| PREDICTED: similar to Splicing factor
3A subunit 3 (Spliceosome associated protein 61) (SAP
61) (SF3a60) [Canis familiaris]
Length = 974
Score = 40.8 bits (94), Expect = 0.11
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMCF 407
+CA C L+ + D+ WH EC ++C GCQ P L+ +D+ Y CF
Sbjct: 307 RCARCSKTLTQGGVTYRDQPWHREC----LVCTGCQTP--LAGQQFTSRDDDPYCVACF 359
>gi|54645820|gb|EAL34558.1| GA16596-PA [Drosophila pseudoobscura]
Length = 177
Score = 40.8 bits (94), Expect = 0.11
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 348 DKCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLK 395
DKCA C+ ++T++I A++ WH +CF+ C C P N +++
Sbjct: 124 DKCAKCEQPITTSAIVAMNVKWHHDCFR----CNRCSNPITTPNFTVE 167
Score = 37.7 bits (86), Expect = 0.90
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 350 CAACDALLSTNSIKALDRNWHAECFQVSIICAG-CQKPFALSNLSLKVKDNRAYHPMCFE 408
CA C + +I A+ NWH ECF C G C+KP LSN + +AY +E
Sbjct: 66 CAGCKKPILERTIVAMGENWHEECF----CCGGACKKP--LSNQPFFERGGKAYCKQDYE 119
Query: 409 S 409
+
Sbjct: 120 N 120
>gi|30526305|gb|AAP32084.1| four and a half LIM domains 3 [Sus
scrofa]
ref|NP_999111.1| four and a half LIM domains 3 [Sus scrofa]
Length = 280
Score = 40.8 bits (94), Expect = 0.11
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMCF 407
+CA C L+ + D+ WH EC ++C GCQ P L+ +D+ Y CF
Sbjct: 161 RCARCSKTLTQGGVTYRDQPWHREC----LVCTGCQTP--LAGQQFTSRDDDPYCVACF 213
>gi|2804415|gb|AAB97536.1| Hypothetical protein C34B2.4
[Caenorhabditis elegans]
ref|NP_492793.1| paxillin (1L246) [Caenorhabditis elegans]
pir||T32880 hypothetical protein C34B2.4 - Caenorhabditis elegans
Length = 131
Score = 40.8 bits (94), Expect = 0.11
Identities = 22/60 (36%), Positives = 29/60 (47%), Gaps = 11/60 (18%)
Query: 350 CAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMCFES 409
C C + TN +AL+ WH CFQ C+ CQKP LKV ++ + MC S
Sbjct: 65 CKGCGEFIKTNFCEALNSTWHPTCFQ----CSVCQKP-------LKVDFHQLPNRMCVHS 113
>gi|37894600|gb|AAF21428.2| salt-induced AAA-Type ATPase
[Mesembryanthemum crystallinum]
Length = 434
Score = 40.8 bits (94), Expect = 0.11
Identities = 24/70 (34%), Positives = 34/70 (48%)
Query: 1 MSSEILQTGLQLVKSAIDADNQKNYSLACNLYDQAVLNLKLALVAEREPSKNALISSKIE 60
M S + ++ VK A+ DN NYS A LY A+ K L E+ P I+ K
Sbjct: 1 MYSNFKEQAIEYVKQAVQEDNAGNYSKAFPLYMNALEYFKTHLKYEKNPKIREAITQKFT 60
Query: 61 EYSQRNKFIK 70
EY +R + I+
Sbjct: 61 EYLRRAEEIR 70
>gi|18568119|gb|AAL75948.1| SKD2 protein [Homo sapiens]
Length = 437
Score = 40.8 bits (94), Expect = 0.11
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 186 KGRKEEEVKNYRGASQCYEEACNYYLMAIKSEP-DPTLKKNLSDEAKIYLDRIEVLKPFA 244
K +E++ KNY A + Y+ A Y+L AIK E K+++ + YLDR E LK +
Sbjct: 15 KATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKCVQYLDRAEKLKDYL 74
Query: 245 AS 246
S
Sbjct: 75 RS 76
>gi|6563218|gb|AAF17203.1| SKD1 protein [Homo sapiens]
Length = 437
Score = 40.8 bits (94), Expect = 0.11
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 186 KGRKEEEVKNYRGASQCYEEACNYYLMAIKSEP-DPTLKKNLSDEAKIYLDRIEVLKPFA 244
K +E++ KNY A + Y+ A Y+L AIK E K+++ + YLDR E LK +
Sbjct: 15 KATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKCVQYLDRAEKLKDYL 74
Query: 245 AS 246
S
Sbjct: 75 RS 76
>gi|38731682|gb|AAR27433.1| four and a half LIM domains 3 [Sus
scrofa]
Length = 250
Score = 40.8 bits (94), Expect = 0.11
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMCF 407
+CA C L+ + D+ WH EC ++C GCQ P L+ +D+ Y CF
Sbjct: 131 RCARCSKTLTQGGVTYRDQPWHREC----LVCTGCQTP--LAGQQFTSRDDDPYCVACF 183
>gi|5381417|gb|AAD42971.1| vacuolar sorting protein 4 [Homo sapiens]
Length = 432
Score = 40.8 bits (94), Expect = 0.11
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 186 KGRKEEEVKNYRGASQCYEEACNYYLMAIKSEP-DPTLKKNLSDEAKIYLDRIEVLKPFA 244
K +E++ KNY A + Y+ A Y+L AIK E K+++ + YLDR E LK +
Sbjct: 10 KATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKCVQYLDRAEKLKDYL 69
Query: 245 AS 246
S
Sbjct: 70 RS 71
>gi|3360516|gb|AAC69756.1| LIM-domain protein [Branchiostoma
floridae]
Length = 291
Score = 40.8 bits (94), Expect = 0.11
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMCF 407
KC C ++S I D WH ECF +C C+KP +S KDN Y C+
Sbjct: 167 KCEKCRKVISMGGITYKDTPWHKECF----VCTHCKKP--MSGERFTSKDNNPYCINCY 219
>gi|47225333|emb|CAG09833.1| unnamed protein product [Tetraodon
nigroviridis]
Length = 296
Score = 40.8 bits (94), Expect = 0.11
Identities = 21/61 (34%), Positives = 30/61 (48%), Gaps = 6/61 (9%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMCFE 408
KC C +S+ I D WH+ECF +C C+KP A S + +N Y CF+
Sbjct: 177 KCFHCKKPISSGGISYQDHPWHSECF----VCHTCRKPLAESRFT--SHENNVYCVDCFK 230
Query: 409 S 409
+
Sbjct: 231 T 231
>gi|47221920|emb|CAF98932.1| unnamed protein product [Tetraodon
nigroviridis]
Length = 423
Score = 40.8 bits (94), Expect = 0.11
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 186 KGRKEEEVKNYRGASQCYEEACNYYLMAIKSEP-DPTLKKNLSDEAKIYLDRIEVLKPF 243
K +E++ KNY A + Y+ A Y+L AIK E K+++ + YLDR E LK +
Sbjct: 10 KATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRGKCMQYLDRAEKLKDY 68
>gi|39579749|emb|CAE56517.1| Hypothetical protein CBG24239
[Caenorhabditis briggsae]
Length = 1649
Score = 40.8 bits (94), Expect = 0.11
Identities = 18/47 (38%), Positives = 25/47 (52%), Gaps = 4/47 (8%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLK 395
KC+ C + ++ + AL + WH CF CA CQKPF S L+
Sbjct: 1536 KCSKCSKSIISDCLNALQKKWHPTCF----TCAHCQKPFGNSAFYLE 1578
>gi|15680277|gb|AAH14501.1| FHL3 protein [Homo sapiens]
Length = 172
Score = 40.4 bits (93), Expect = 0.14
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMCF 407
+CA C L+ + D+ WH EC ++C GCQ P L+ +D Y CF
Sbjct: 53 RCARCSKTLTQGGVTYRDQPWHREC----LVCTGCQTP--LAGQQFTSRDEDPYCVACF 105
>gi|12655007|gb|AAH01351.1| Four and a half LIM domains 3 [Homo
sapiens]
gb|AAP35701.1| four and a half LIM domains 3 [Homo sapiens]
ref|NP_004459.2| four and a half LIM domains 3 [Homo sapiens]
emb|CAH69931.1| four and a half LIM domains 3 [Homo sapiens]
gb|AAH11697.1| FHL3 protein [Homo sapiens]
Length = 280
Score = 40.4 bits (93), Expect = 0.14
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMCF 407
+CA C L+ + D+ WH EC ++C GCQ P L+ +D Y CF
Sbjct: 161 RCARCSKTLTQGGVTYRDQPWHREC----LVCTGCQTP--LAGQQFTSRDEDPYCVACF 213
>gi|30584447|gb|AAP36476.1| Homo sapiens four and a half LIM domains
3 [synthetic construct]
Length = 281
Score = 40.4 bits (93), Expect = 0.14
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMCF 407
+CA C L+ + D+ WH EC ++C GCQ P L+ +D Y CF
Sbjct: 161 RCARCSKTLTQGGVTYRDQPWHREC----LVCTGCQTP--LAGQQFTSRDEDPYCVACF 213
>gi|55586844|ref|XP_513331.1| PREDICTED: similar to four and a half
LIM domains 3 [Pan troglodytes]
Length = 372
Score = 40.4 bits (93), Expect = 0.14
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMCF 407
+CA C L+ + D+ WH EC ++C GCQ P L+ +D Y CF
Sbjct: 247 RCARCSKTLTQGGVTYRDQPWHREC----LVCTGCQTP--LAGQQFTSRDEDPYCVACF 299
>gi|6753868|ref|NP_034343.1| four and a half LIM domains 3 [Mus
musculus]
gb|AAD32623.1| LIM protein [Mus musculus]
Length = 280
Score = 40.4 bits (93), Expect = 0.14
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMCF 407
+CA C L+ + D+ WH EC ++C GCQ P L+ +D Y CF
Sbjct: 161 RCARCSKTLTQGGVTYRDQPWHREC----LVCTGCQTP--LAGQQFTSRDEDPYCVACF 213
>gi|51173715|ref|NP_001003408.1| actin-binding LIM protein 1 isoform
c [Homo sapiens]
Length = 746
Score = 40.4 bits (93), Expect = 0.14
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 347 GDKCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMC 406
G KC AC ++ ++A D+++H C + C+ C + F + ++ + +HP C
Sbjct: 222 GVKCEACHQFITGKVLEAGDKHYHPSCAR----CSRCNQMFT-EGEEMYLQGSTVWHPDC 276
Query: 407 FESTTGLSQEEIRTFVGSSKQLFFSIQLQRKFYRA 441
+ST + + SS F+S L R+ R+
Sbjct: 277 KQSTKTEEKLRLPNIRRSSSDFFYSKSLIRRTGRS 311
>gi|21728408|ref|NP_663711.1| vacuolar protein sorting 4a [Rattus
norvegicus]
ref|NP_569053.1| vacuolar protein sorting 4a [Mus musculus]
gb|AAM94861.1| vacuolar protein sorting factor VPS4a [Mus musculus]
gb|AAH18368.1| Vps4a protein [Mus musculus]
dbj|BAC33165.1| unnamed protein product [Mus musculus]
dbj|BAC00961.1| vacuolar sorting protein4 A [Rattus norvegicus]
Length = 437
Score = 40.4 bits (93), Expect = 0.14
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 186 KGRKEEEVKNYRGASQCYEEACNYYLMAIKSEP-DPTLKKNLSDEAKIYLDRIEVLKPF 243
K +E++ KNY A + Y+ A Y+L AIK E K+++ + YLDR E LK +
Sbjct: 15 KATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKCMQYLDRAEKLKDY 73
>gi|3880693|emb|CAA15978.1| Hypothetical protein Y1A5A.1
[Caenorhabditis elegans]
pir||T26544 hypothetical protein Y1A5A.1 - Caenorhabditis elegans
ref|NP_497801.1| protein containing two LIM domains (3F76) [Caenorhabditis elegans]
Length = 192
Score = 40.4 bits (93), Expect = 0.14
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMC 406
KCA C L + ALDR+WH CF C+ C +P L N + D++ Y C
Sbjct: 124 KCAGCMETLVDTCLLALDRHWHPRCF----TCSSCNRP--LPNGEFYLVDDKPYDLDC 175
>gi|47481731|gb|AAH70931.1| Vps4a protein [Rattus norvegicus]
Length = 447
Score = 40.4 bits (93), Expect = 0.14
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 186 KGRKEEEVKNYRGASQCYEEACNYYLMAIKSEP-DPTLKKNLSDEAKIYLDRIEVLKPF 243
K +E++ KNY A + Y+ A Y+L AIK E K+++ + YLDR E LK +
Sbjct: 15 KATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKCMQYLDRAEKLKDY 73
>gi|55859666|emb|CAI10909.1| actin binding LIM protein 1 [Homo
sapiens]
emb|CAI40139.1| actin binding LIM protein 1 [Homo sapiens]
Length = 846
Score = 40.4 bits (93), Expect = 0.14
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 347 GDKCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMC 406
G KC AC ++ ++A D+++H C + C+ C + F + ++ + +HP C
Sbjct: 282 GVKCEACHQFITGKVLEAGDKHYHPSCAR----CSRCNQMFT-EGEEMYLQGSTVWHPDC 336
Query: 407 FESTTGLSQEEIRTFVGSSKQLFFSIQLQRKFYRA 441
+ST + + SS F+S L R+ R+
Sbjct: 337 KQSTKTEEKLRLPNIRRSSSDFFYSKSLIRRTGRS 371
>gi|39595823|emb|CAE67326.1| Hypothetical protein CBG12788
[Caenorhabditis briggsae]
Length = 131
Score = 40.4 bits (93), Expect = 0.14
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 350 CAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMCF 407
C C + TN +AL+ WH CFQ C+ CQKP ++ L K H CF
Sbjct: 65 CKGCGDFIKTNVCEALNSTWHPTCFQ----CSVCQKPLEVNFHQLPNK--MCVHSECF 116
>gi|48146967|emb|CAG33706.1| FHL3 [Homo sapiens]
Length = 280
Score = 40.4 bits (93), Expect = 0.14
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMCF 407
+CA C L+ + D+ WH EC ++C GCQ P L+ +D Y CF
Sbjct: 161 RCARCSKTLTQGGVTYRDQPWHREC----LVCTGCQTP--LAGQQFTSRDEDPYCVACF 213
>gi|40744456|gb|EAA63632.1| hypothetical protein AN3061.2
[Aspergillus nidulans FGSC A4]
ref|XP_407198.1| hypothetical protein AN3061.2 [Aspergillus nidulans FGSC A4]
Length = 434
Score = 40.0 bits (92), Expect = 0.18
Identities = 22/69 (31%), Positives = 35/69 (49%)
Query: 2 SSEILQTGLQLVKSAIDADNQKNYSLACNLYDQAVLNLKLALVAEREPSKNALISSKIEE 61
+++ L + VK AI++DN+ Y A Y A+ LAL E+ P +I +K E
Sbjct: 3 NTDFLGRAIDTVKKAIESDNEGEYEKAYQQYYSALELFMLALKWEKNPKSKEMIRAKTGE 62
Query: 62 YSQRNKFIK 70
Y R + +K
Sbjct: 63 YMDRAEKLK 71
>gi|46097053|gb|EAK82286.1| hypothetical protein UM01669.1
[Ustilago maydis 521]
ref|XP_399284.1| hypothetical protein UM01669.1 [Ustilago maydis 521]
Length = 474
Score = 40.0 bits (92), Expect = 0.18
Identities = 21/69 (30%), Positives = 36/69 (51%)
Query: 2 SSEILQTGLQLVKSAIDADNQKNYSLACNLYDQAVLNLKLALVAEREPSKNALISSKIEE 61
+S+ L +++V+ AID D ++NY A LY ++ +A+ E+ LI K E
Sbjct: 3 NSDFLNKAIEIVQKAIDEDVKQNYQEAYKLYQNSLDYFMMAMKYEKNDKLKDLIRKKFTE 62
Query: 62 YSQRNKFIK 70
Y R + +K
Sbjct: 63 YLDRAEKLK 71
Score = 40.0 bits (92), Expect = 0.18
Identities = 22/57 (38%), Positives = 35/57 (60%), Gaps = 1/57 (1%)
Query: 190 EEEVK-NYRGASQCYEEACNYYLMAIKSEPDPTLKKNLSDEAKIYLDRIEVLKPFAA 245
+E+VK NY+ A + Y+ + +Y++MA+K E + LK + + YLDR E LK A
Sbjct: 19 DEDVKQNYQEAYKLYQNSLDYFMMAMKYEKNDKLKDLIRKKFTEYLDRAEKLKEHLA 75
>gi|7381058|gb|AAF61376.1| LIM-only protein FHL3 [Homo sapiens]
Length = 280
Score = 40.0 bits (92), Expect = 0.18
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 350 CAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMCF 407
CA C L+ + D+ WH EC ++C GCQ P A + +D Y CF
Sbjct: 162 CARCSKTLTQGGVTYRDQPWHREC----LVCTGCQTPLARQQFT--SRDEDPYCVACF 213
>gi|47216805|emb|CAG10127.1| unnamed protein product [Tetraodon
nigroviridis]
Length = 372
Score = 40.0 bits (92), Expect = 0.18
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 347 GDKCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSN 391
G +C CD+ ++ + AL R +H +CF +C+ C KPF + +
Sbjct: 59 GTRCDRCDSFITGEVVSALGRTYHPKCF----VCSVCSKPFPIGD 99
>gi|2773175|gb|AAB96695.1| Hypothetical protein F33D11.1
[Caenorhabditis elegans]
ref|NP_491698.1| paxillin (1G427) [Caenorhabditis elegans]
pir||T32769 hypothetical protein F33D11.1 - Caenorhabditis elegans
Length = 131
Score = 39.7 bits (91), Expect = 0.24
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 350 CAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMCF 407
C C + TN +AL+ WH CFQ C+ CQKP + L + H CF
Sbjct: 65 CKGCGEFIKTNLCEALNSTWHPTCFQ----CSVCQKPLEVDFHQL--PNRMCVHSDCF 116
>gi|41053804|ref|NP_957191.1| hypothetical protein MGC77740 [Danio
rerio]
emb|CAI20916.1| novel protein similar to vertebrate cysteine and glycine-rich
protein 2 (CSRP2) (zgc:77740) [Danio rerio]
gb|AAH64303.1| Hypothetical protein MGC77740 [Danio rerio]
Length = 193
Score = 39.7 bits (91), Expect = 0.24
Identities = 25/77 (32%), Positives = 35/77 (44%), Gaps = 8/77 (10%)
Query: 338 TSSLPLTFSG-DKCAAC-DALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLK 395
TS F G +KCA C DA+ + I + + WH CF+ CA C K +L + +
Sbjct: 106 TSKFAQKFGGSEKCARCGDAVYAAEKIMSAGKPWHKNCFR----CAKCGK--SLESTTQT 159
Query: 396 VKDNRAYHPMCFESTTG 412
KD Y C+ G
Sbjct: 160 EKDGEIYCKACYAKNFG 176
>gi|51768229|ref|XP_138922.3| similar to SKD1 [Mus musculus]
Length = 446
Score = 39.7 bits (91), Expect = 0.24
Identities = 25/79 (31%), Positives = 39/79 (48%), Gaps = 7/79 (8%)
Query: 166 STNRQLSRVEAYEAAKNFSLKGRKEEEVKNYRGASQCYEEACNYYLMAIKSEPD-PTLKK 224
STN L + A + + K +E++ NY A Q Y+ A Y+L +K E K+
Sbjct: 3 STNTNLQK------AIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQ 56
Query: 225 NLSDEAKIYLDRIEVLKPF 243
++ + YLDR E LK +
Sbjct: 57 SIGTKCTEYLDRAEKLKEY 75
>gi|5441369|emb|CAB46728.1| ZASP protein [Homo sapiens]
Length = 617
Score = 39.7 bits (91), Expect = 0.24
Identities = 19/58 (32%), Positives = 27/58 (45%), Gaps = 6/58 (10%)
Query: 345 FSGDKCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAY 402
F CA C+ + + AL + WH CF +CA C+KPF N ++D Y
Sbjct: 495 FXAPLCAKCNTKIMGEVMHALRQTWHTTCF----VCAACKKPF--GNSLFHMEDGEPY 546
>gi|47208159|emb|CAF93402.1| unnamed protein product [Tetraodon
nigroviridis]
Length = 257
Score = 39.7 bits (91), Expect = 0.24
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFA 388
KC+ C + N + A + WH ECF +C C KPFA
Sbjct: 142 KCSGCGEAVKENYLSAANGTWHPECF----VCLDCLKPFA 177
>gi|24585205|ref|NP_523601.2| CG31794-PA, isoform A [Drosophila
melanogaster]
gb|AAF53792.3| CG31794-PA, isoform A [Drosophila melanogaster]
Length = 581
Score = 39.3 bits (90), Expect = 0.31
Identities = 15/39 (38%), Positives = 22/39 (55%), Gaps = 4/39 (10%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPF 387
KC C+ + N I AL+ WH +CF +C C++PF
Sbjct: 465 KCNGCNRAIMENYISALNSQWHPDCF----VCRDCRQPF 499
>gi|55237161|gb|EAA12524.3| ENSANGP00000011015 [Anopheles gambiae
str. PEST]
ref|XP_316909.2| ENSANGP00000011015 [Anopheles gambiae str. PEST]
Length = 293
Score = 39.3 bits (90), Expect = 0.31
Identities = 15/39 (38%), Positives = 22/39 (55%), Gaps = 4/39 (10%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPF 387
KC C+ + N I AL+ WH +CF +C C++PF
Sbjct: 177 KCNGCNRAIMENYISALNSQWHPDCF----VCRDCREPF 211
>gi|55242499|gb|EAA44965.2| ENSANGP00000023717 [Anopheles gambiae
str. PEST]
ref|XP_311813.2| ENSANGP00000023717 [Anopheles gambiae str. PEST]
Length = 296
Score = 39.3 bits (90), Expect = 0.31
Identities = 15/39 (38%), Positives = 22/39 (55%), Gaps = 4/39 (10%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPF 387
KC C+ + N I AL+ WH +CF +C C++PF
Sbjct: 180 KCNGCNRAIMENYISALNSQWHPDCF----VCRDCREPF 214
>gi|34880751|ref|XP_341136.1| similar to LIM-homeobox protein
[Rattus norvegicus]
Length = 452
Score = 39.3 bits (90), Expect = 0.31
Identities = 20/49 (40%), Positives = 27/49 (54%), Gaps = 5/49 (10%)
Query: 341 LPLTFSGDKCAACDA-LLSTNSIKALDRNWHAECFQVSIICAGCQKPFA 388
LPLT +CA C+ +L +K LDR+WH+ C + CA CQ A
Sbjct: 118 LPLTSEIPQCAGCNQHILDKFILKVLDRHWHSSCLK----CADCQMQLA 162
>gi|57092835|ref|XP_531773.1| PREDICTED: similar to four and a half
LIM domains 2 [Canis familiaris]
Length = 184
Score = 39.3 bits (90), Expect = 0.31
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMCF 407
+C C ++T + ++ WH ECF +C C+KP LS +D AY CF
Sbjct: 66 QCVQCKKPITTGGVTYREQPWHRECF----VCTACKKP--LSGQRFTSRDEFAYCLSCF 118
>gi|50254898|gb|EAL17638.1| hypothetical protein CNBL1530
[Cryptococcus neoformans var. neoformans B-3501A]
Length = 542
Score = 39.3 bits (90), Expect = 0.31
Identities = 22/60 (36%), Positives = 30/60 (49%), Gaps = 6/60 (10%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMCFE 408
KC AC + +I A+ WH ECF +C+ C FA +NL KD A +C+E
Sbjct: 485 KCKACTLPIPDIAINAMGAKWHKECF----VCSRCHNDFA-NNLFFP-KDGTAICTICYE 538
>gi|24585209|ref|NP_724187.1| CG31794-PE, isoform E [Drosophila
melanogaster]
ref|NP_724186.1| CG31794-PD, isoform D [Drosophila melanogaster]
gb|AAN11040.1| CG31794-PE, isoform E [Drosophila melanogaster]
gb|AAN11039.1| CG31794-PD, isoform D [Drosophila melanogaster]
Length = 255
Score = 39.3 bits (90), Expect = 0.31
Identities = 15/39 (38%), Positives = 22/39 (55%), Gaps = 4/39 (10%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPF 387
KC C+ + N I AL+ WH +CF +C C++PF
Sbjct: 139 KCNGCNRAIMENYISALNSQWHPDCF----VCRDCRQPF 173
>gi|24585203|ref|NP_724185.1| CG31794-PB, isoform B [Drosophila
melanogaster]
gb|AAF53791.2| CG31794-PB, isoform B [Drosophila melanogaster]
Length = 556
Score = 39.3 bits (90), Expect = 0.31
Identities = 15/39 (38%), Positives = 22/39 (55%), Gaps = 4/39 (10%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPF 387
KC C+ + N I AL+ WH +CF +C C++PF
Sbjct: 440 KCNGCNRAIMENYISALNSQWHPDCF----VCRDCRQPF 474
>gi|24585201|ref|NP_724184.1| CG31794-PF, isoform F [Drosophila
melanogaster]
ref|NP_724183.1| CG31794-PC, isoform C [Drosophila melanogaster]
gb|AAN11038.1| CG31794-PF, isoform F [Drosophila melanogaster]
gb|AAN11037.1| CG31794-PC, isoform C [Drosophila melanogaster]
Length = 557
Score = 39.3 bits (90), Expect = 0.31
Identities = 15/39 (38%), Positives = 22/39 (55%), Gaps = 4/39 (10%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPF 387
KC C+ + N I AL+ WH +CF +C C++PF
Sbjct: 441 KCNGCNRAIMENYISALNSQWHPDCF----VCRDCRQPF 475
>gi|54644592|gb|EAL33333.1| GA16481-PA [Drosophila pseudoobscura]
Length = 593
Score = 39.3 bits (90), Expect = 0.31
Identities = 15/39 (38%), Positives = 22/39 (55%), Gaps = 4/39 (10%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPF 387
KC C+ + N I AL+ WH +CF +C C++PF
Sbjct: 477 KCNGCNRAIMENYISALNSQWHPDCF----VCRDCRQPF 511
>gi|51703541|gb|AAH81138.1| MGC84050 protein [Xenopus laevis]
Length = 436
Score = 39.3 bits (90), Expect = 0.31
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 186 KGRKEEEVKNYRGASQCYEEACNYYLMAIKSEP-DPTLKKNLSDEAKIYLDRIEVLKPF 243
K +E++ KNY A + Y+ A Y+L AIK E K+++ + YLDR E LK +
Sbjct: 15 KATEEDKNKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKCMQYLDRAEKLKDY 73
>gi|21593336|gb|AAM65285.1| putative ATPase [Arabidopsis thaliana]
Length = 434
Score = 39.3 bits (90), Expect = 0.31
Identities = 23/70 (32%), Positives = 34/70 (47%)
Query: 1 MSSEILQTGLQLVKSAIDADNQKNYSLACNLYDQAVLNLKLALVAEREPSKNALISSKIE 60
M S + ++ VK A+ DN NY+ A LY A+ K L E+ P I+ K
Sbjct: 1 MYSNFKEQAIEYVKQAVHEDNAGNYNKAFPLYMNALEYFKTHLKYEKNPKIREAITQKFT 60
Query: 61 EYSQRNKFIK 70
EY +R + I+
Sbjct: 61 EYLRRAEEIR 70
>gi|49646836|emb|CAG83223.1| unnamed protein product [Yarrowia
lipolytica CLIB99]
ref|XP_500970.1| hypothetical protein [Yarrowia lipolytica]
Length = 428
Score = 39.3 bits (90), Expect = 0.31
Identities = 21/67 (31%), Positives = 33/67 (48%)
Query: 4 EILQTGLQLVKSAIDADNQKNYSLACNLYDQAVLNLKLALVAEREPSKNALISSKIEEYS 63
+ L L++V+ AI+ADN Y A LY + A+ E+ P L+ +I EY
Sbjct: 5 DFLSKALEIVRKAIEADNASKYEEAHELYVNGLDYFIKAIKYEKNPKSKELLRQRITEYF 64
Query: 64 QRNKFIK 70
R + +K
Sbjct: 65 SRAEQLK 71
>gi|21483570|gb|AAM52760.1| SD04793p [Drosophila melanogaster]
Length = 557
Score = 39.3 bits (90), Expect = 0.31
Identities = 15/39 (38%), Positives = 22/39 (55%), Gaps = 4/39 (10%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPF 387
KC C+ + N I AL+ WH +CF +C C++PF
Sbjct: 441 KCNGCNRAIMENYISALNSQWHPDCF----VCRDCRQPF 475
>gi|50730480|ref|XP_416924.1| PREDICTED: similar to four and a half
LIM domains 2 isoform 2; down-regulated in
rhabdomyosarcoma LIM protein [Gallus gallus]
Length = 279
Score = 39.3 bits (90), Expect = 0.31
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMCF 407
+C C ++T + ++ WH ECF +C GC+K LS +D AY CF
Sbjct: 161 QCVQCKKAITTGGVTYREQPWHKECF----VCTGCKK--QLSGQRFTSRDEFAYCLSCF 213
>gi|20197659|gb|AAM15184.1| putative ATPase [Arabidopsis thaliana]
gb|AAC73040.1| putative ATPase [Arabidopsis thaliana]
gb|AAM10283.1| F10A12.27/F10A12.27 [Arabidopsis thaliana]
gb|AAK32884.1| F10A12.27/F10A12.27 [Arabidopsis thaliana]
pir||F84674 probable AAA-type ATPase [imported] - Arabidopsis thaliana
ref|NP_180328.1| AAA-type ATPase family protein / vacuolar sorting protein-related
[Arabidopsis thaliana]
Length = 435
Score = 39.3 bits (90), Expect = 0.31
Identities = 23/70 (32%), Positives = 34/70 (47%)
Query: 1 MSSEILQTGLQLVKSAIDADNQKNYSLACNLYDQAVLNLKLALVAEREPSKNALISSKIE 60
M S + ++ VK A+ DN NY+ A LY A+ K L E+ P I+ K
Sbjct: 1 MYSNFKEQAIEYVKQAVHEDNAGNYNKAFPLYMNALEYFKTHLKYEKNPKIREAITQKFT 60
Query: 61 EYSQRNKFIK 70
EY +R + I+
Sbjct: 61 EYLRRAEEIR 70
>gi|8131974|gb|AAF73159.1| LIM protein FHL3 [Mus musculus]
Length = 218
Score = 39.3 bits (90), Expect = 0.31
Identities = 18/59 (30%), Positives = 28/59 (46%), Gaps = 6/59 (10%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMCF 407
+CA C L+ + D+ WH EC ++C GC+ P L+ +D+ Y CF
Sbjct: 151 RCARCSKTLTQGGVTYRDQPWHREC----LVCTGCKTP--LAGQQFTSRDDDPYCVACF 203
>gi|57228597|gb|AAW45032.1| conserved hypothetical protein
[Cryptococcus neoformans var. neoformans JEC21]
ref|XP_572339.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 821
Score = 39.3 bits (90), Expect = 0.31
Identities = 22/60 (36%), Positives = 30/60 (49%), Gaps = 6/60 (10%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMCFE 408
KC AC + +I A+ WH ECF +C+ C FA +NL KD A +C+E
Sbjct: 764 KCKACTLPIPDIAINAMGAKWHKECF----VCSRCHNDFA-NNLFFP-KDGTAICTICYE 817
>gi|14669824|dbj|BAB62005.1| paxillin-derived LIM-only protein
[Drosophila melanogaster]
Length = 197
Score = 39.3 bits (90), Expect = 0.31
Identities = 21/69 (30%), Positives = 32/69 (45%), Gaps = 10/69 (14%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMCFE 408
KC C+ + N I AL+ WH +CF +C C+K A+ S + + P C
Sbjct: 139 KCNGCNRAIMENYISALNSQWHPDCF----VCRDCKK--AVRGKSFYAMEGKPVCPQC-- 190
Query: 409 STTGLSQEE 417
G+ +EE
Sbjct: 191 --VGVDEEE 197
>gi|14669808|dbj|BAB33159.2| paxillin [Drosophila melanogaster]
Length = 581
Score = 39.3 bits (90), Expect = 0.31
Identities = 15/39 (38%), Positives = 22/39 (55%), Gaps = 4/39 (10%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPF 387
KC C+ + N I AL+ WH +CF +C C++PF
Sbjct: 465 KCNGCNRAIMENYISALNSQWHPDCF----VCRDCRQPF 499
>gi|47219735|emb|CAG12657.1| unnamed protein product [Tetraodon
nigroviridis]
Length = 410
Score = 39.3 bits (90), Expect = 0.31
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 11/91 (12%)
Query: 344 TFSGDKCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYH 403
T CA C+ + + ALD+NWH ECF C C + F + ++ + Y
Sbjct: 230 TLFSPHCAHCNKPILNKMVTALDKNWHPECF----CCVKCSRAF--GDEGFHDREGQQYC 283
Query: 404 PMCF-----ESTTGLSQEEIRTFVGSSKQLF 429
CF G SQ + +++ + L+
Sbjct: 284 QHCFLTLFASRCQGCSQPILESYISALNALW 314
>gi|11321422|gb|AAG34161.1| focal contact protein paxillin
[Drosophila melanogaster]
Length = 556
Score = 39.3 bits (90), Expect = 0.31
Identities = 15/39 (38%), Positives = 22/39 (55%), Gaps = 4/39 (10%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPF 387
KC C+ + N I AL+ WH +CF +C C++PF
Sbjct: 440 KCNGCNRAIMENYISALNSQWHPDCF----VCRDCRQPF 474
>gi|23396870|sp|Q9R059|SLIM2_MOUSE Skeletal muscle LIM-protein 2
(SLIM 2) (Four and a half LIM domains protein 3) (FHL-3)
gb|AAD53231.1| four and half LIM domain protein 3 [Mus musculus]
Length = 289
Score = 39.3 bits (90), Expect = 0.31
Identities = 18/59 (30%), Positives = 29/59 (48%), Gaps = 6/59 (10%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMCF 407
+CA C L+ + D+ WH EC ++C GC+ P A + + +D+ Y CF
Sbjct: 161 RCARCSKTLTQGGVTYRDQPWHREC----LVCTGCKTPLAGQHFT--SRDDDPYCVACF 213
>gi|6677981|ref|NP_033216.1| vacuolar protein sorting 4b [Mus
musculus]
pir||S48696 suppressor protein SKD1 - mouse
gb|AAA50497.1| SKD1
Length = 444
Score = 38.9 bits (89), Expect = 0.40
Identities = 25/79 (31%), Positives = 39/79 (48%), Gaps = 7/79 (8%)
Query: 166 STNRQLSRVEAYEAAKNFSLKGRKEEEVKNYRGASQCYEEACNYYLMAIKSEPD-PTLKK 224
STN L + A + + K +E++ NY A Q Y+ A Y+L +K E K+
Sbjct: 3 STNTNLQK------AIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQ 56
Query: 225 NLSDEAKIYLDRIEVLKPF 243
++ + YLDR E LK +
Sbjct: 57 SIRAKCTEYLDRAEKLKEY 75
>gi|13277834|gb|AAH03799.1| Vacuolar protein sorting 4b [Mus
musculus]
gb|AAD47570.1| SKD1 [Mus musculus]
sp|P46467|SKD1_MOUSE SKD1 protein (Vacuolar sorting protein 4b)
Length = 444
Score = 38.9 bits (89), Expect = 0.40
Identities = 25/79 (31%), Positives = 39/79 (48%), Gaps = 7/79 (8%)
Query: 166 STNRQLSRVEAYEAAKNFSLKGRKEEEVKNYRGASQCYEEACNYYLMAIKSEPD-PTLKK 224
STN L + A + + K +E++ NY A Q Y+ A Y+L +K E K+
Sbjct: 3 STNTNLQK------AIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQ 56
Query: 225 NLSDEAKIYLDRIEVLKPF 243
++ + YLDR E LK +
Sbjct: 57 SIRAKCTEYLDRAEKLKEY 75
>gi|34878783|ref|XP_341108.1| similar to SKD1 [Rattus norvegicus]
Length = 444
Score = 38.9 bits (89), Expect = 0.40
Identities = 25/79 (31%), Positives = 39/79 (48%), Gaps = 7/79 (8%)
Query: 166 STNRQLSRVEAYEAAKNFSLKGRKEEEVKNYRGASQCYEEACNYYLMAIKSEPD-PTLKK 224
STN L + A + + K +E++ NY A Q Y+ A Y+L +K E K+
Sbjct: 3 STNTNLQK------AIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQ 56
Query: 225 NLSDEAKIYLDRIEVLKPF 243
++ + YLDR E LK +
Sbjct: 57 SIRAKCTEYLDRAEKLKEY 75
>gi|33589342|gb|AAQ22438.1| RE64941p [Drosophila melanogaster]
ref|NP_996110.1| CG32171-PG, isoform G [Drosophila melanogaster]
ref|NP_648930.1| CG32171-PB, isoform B [Drosophila melanogaster]
gb|AAS64977.1| CG32171-PG, isoform G [Drosophila melanogaster]
gb|AAF49398.2| CG32171-PB, isoform B [Drosophila melanogaster]
gb|AAL39841.1| LD46723p [Drosophila melanogaster]
emb|CAD11441.1| limpet [Drosophila melanogaster]
Length = 559
Score = 38.9 bits (89), Expect = 0.40
Identities = 25/84 (29%), Positives = 42/84 (49%), Gaps = 8/84 (9%)
Query: 349 KCAACDALL-STNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMCF 407
+CA CD L+ S KA+D++WH+ F C C + +L+ ++D+ Y C+
Sbjct: 257 RCAGCDELIFSGEYTKAMDKDWHSGHF----CCWQCDE--SLTGQRYVIRDDHPYCIKCY 310
Query: 408 ESTTGLSQEEIRTFVG-SSKQLFF 430
E+ + EE +G SK L +
Sbjct: 311 ENVFANTCEECNKIIGIDSKDLSY 334
>gi|45553163|ref|NP_996109.1| CG32171-PH, isoform H [Drosophila
melanogaster]
ref|NP_730212.1| CG32171-PD, isoform D [Drosophila melanogaster]
gb|AAS64978.1| CG32171-PH, isoform H [Drosophila melanogaster]
gb|AAN11714.1| CG32171-PD, isoform D [Drosophila melanogaster]
Length = 558
Score = 38.9 bits (89), Expect = 0.40
Identities = 25/84 (29%), Positives = 42/84 (49%), Gaps = 8/84 (9%)
Query: 349 KCAACDALL-STNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMCF 407
+CA CD L+ S KA+D++WH+ F C C + +L+ ++D+ Y C+
Sbjct: 256 RCAGCDELIFSGEYTKAMDKDWHSGHF----CCWQCDE--SLTGQRYVIRDDHPYCIKCY 309
Query: 408 ESTTGLSQEEIRTFVG-SSKQLFF 430
E+ + EE +G SK L +
Sbjct: 310 ENVFANTCEECNKIIGIDSKDLSY 333
>gi|54641566|gb|EAL30316.1| GA16731-PA [Drosophila pseudoobscura]
Length = 559
Score = 38.9 bits (89), Expect = 0.40
Identities = 25/84 (29%), Positives = 42/84 (49%), Gaps = 8/84 (9%)
Query: 349 KCAACDALL-STNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMCF 407
+CA CD L+ S KA+D++WH+ F C C + +L+ ++D+ Y C+
Sbjct: 257 RCAGCDELIFSGEYTKAMDKDWHSGHF----CCWQCDE--SLTGQRYVIRDDHPYCIKCY 310
Query: 408 ESTTGLSQEEIRTFVG-SSKQLFF 430
E+ + EE +G SK L +
Sbjct: 311 ENVFANTCEECNKIIGIDSKDLSY 334
>gi|55770195|ref|XP_550087.1| putative p60 katanin [Oryza sativa
(japonica cultivar-group)]
dbj|BAD61062.1| putative p60 katanin [Oryza sativa (japonica cultivar-group)]
Length = 478
Score = 38.9 bits (89), Expect = 0.40
Identities = 23/70 (32%), Positives = 35/70 (49%)
Query: 1 MSSEILQTGLQLVKSAIDADNQKNYSLACNLYDQAVLNLKLALVAEREPSKNALISSKIE 60
M S + ++ VK A+ DN NY A LY A+ K L E++P I++K
Sbjct: 1 MYSNFKEQAIEYVKQAVQEDNGGNYVKAFPLYMNALEYFKTHLKYEKDPKIKDAIAAKFT 60
Query: 61 EYSQRNKFIK 70
EY +R + I+
Sbjct: 61 EYLRRAEEIR 70
>gi|55647529|ref|XP_523954.1| PREDICTED: similar to vacuolar protein
sorting factor 4B; suppressor of K+ transport defect 1;
cell migration-inducing 1 [Pan troglodytes]
Length = 529
Score = 38.9 bits (89), Expect = 0.40
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 171 LSRVEAYEAAKNFSLKGRKEEEVKNYRGASQCYEEACNYYLMAIKSEPD-PTLKKNLSDE 229
+S V + A + + K +E++ NY A Q Y+ A Y+L +K E K+++ +
Sbjct: 87 VSPVMVEKKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAK 146
Query: 230 AKIYLDRIEVLKPF 243
YLDR E LK +
Sbjct: 147 CTEYLDRAEKLKEY 160
>gi|34895696|ref|NP_909197.1| putative AAA-type ATPase [Oryza
sativa (japonica cultivar-group)]
Length = 411
Score = 38.9 bits (89), Expect = 0.40
Identities = 23/70 (32%), Positives = 35/70 (49%)
Query: 1 MSSEILQTGLQLVKSAIDADNQKNYSLACNLYDQAVLNLKLALVAEREPSKNALISSKIE 60
M S + ++ VK A+ DN NY A LY A+ K L E++P I++K
Sbjct: 1 MYSNFKEQAIEYVKQAVQEDNGGNYVKAFPLYMNALEYFKTHLKYEKDPKIKDAIAAKFT 60
Query: 61 EYSQRNKFIK 70
EY +R + I+
Sbjct: 61 EYLRRAEEIR 70
>gi|22652796|gb|AAN03820.1| AAA-ATPase-like protein [Oryza sativa
(japonica cultivar-group)]
Length = 408
Score = 38.9 bits (89), Expect = 0.40
Identities = 23/70 (32%), Positives = 34/70 (47%)
Query: 1 MSSEILQTGLQLVKSAIDADNQKNYSLACNLYDQAVLNLKLALVAEREPSKNALISSKIE 60
M S + ++ VK A+ DN NY A LY A+ K L E+ P I++K
Sbjct: 1 MYSNFKEQAIEYVKQAVQEDNAGNYVKAFPLYMNALEYFKTHLKYEKNPKIKEAITAKFT 60
Query: 61 EYSQRNKFIK 70
EY +R + I+
Sbjct: 61 EYLRRAEEIR 70
>gi|5441371|emb|CAB46729.1| ZASP protein [Homo sapiens]
Length = 470
Score = 38.9 bits (89), Expect = 0.40
Identities = 19/58 (32%), Positives = 27/58 (45%), Gaps = 6/58 (10%)
Query: 345 FSGDKCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAY 402
F CA C+ + + AL + WH CF +CA C+KPF N ++D Y
Sbjct: 348 FFAPLCAKCNTKIMGEVMHALRQTWHTTCF----VCAACKKPF--GNSLFHMEDGEPY 399
>gi|45592959|ref|NP_009009.1| LIM domain binding 3 [Homo sapiens]
Length = 727
Score = 38.9 bits (89), Expect = 0.40
Identities = 19/58 (32%), Positives = 27/58 (45%), Gaps = 6/58 (10%)
Query: 345 FSGDKCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAY 402
F CA C+ + + AL + WH CF +CA C+KPF N ++D Y
Sbjct: 605 FFAPLCAKCNTKIMGEVMHALRQTWHTTCF----VCAACKKPF--GNSLFHMEDGEPY 656
>gi|3327040|dbj|BAA31588.1| KIAA0613 protein [Homo sapiens]
Length = 734
Score = 38.9 bits (89), Expect = 0.40
Identities = 19/58 (32%), Positives = 27/58 (45%), Gaps = 6/58 (10%)
Query: 345 FSGDKCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAY 402
F CA C+ + + AL + WH CF +CA C+KPF N ++D Y
Sbjct: 612 FFAPLCAKCNTKIMGEVMHALRQTWHTTCF----VCAACKKPF--GNSLFHMEDGEPY 663
>gi|55665409|emb|CAH70853.1| filamin-binding LIM protein-1 (FBLP-1)
[Homo sapiens]
Length = 276
Score = 38.5 bits (88), Expect = 0.53
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 345 FSGDKCAACDALLSTN--SIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAY 402
F+GD CA C +S +++A+ R +HA+CF C C++ L+ S KD R
Sbjct: 81 FNGDICAFCHKTVSPRELAVEAMKRQYHAQCF----TCRTCRR--QLAGQSFYQKDGRPL 134
Query: 403 HPMCFEST 410
C++ T
Sbjct: 135 CEPCYQDT 142
>gi|24645467|ref|NP_731391.1| CG31332-PA, isoform A [Drosophila
melanogaster]
gb|AAF54428.2| CG31332-PA, isoform A [Drosophila melanogaster]
gb|AAL30429.1| DUNC-115m [Drosophila melanogaster]
gb|AAK93504.1| SD03267p [Drosophila melanogaster]
Length = 768
Score = 38.5 bits (88), Expect = 0.53
Identities = 23/70 (32%), Positives = 32/70 (44%), Gaps = 8/70 (11%)
Query: 345 FSGDKCAACDALLSTN-SIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYH 403
+ + CA C LL ++ ALDR WH CF+ C CQ A+ N KD Y
Sbjct: 190 YDPNDCAGCGELLKEGQALVALDRQWHVSCFR----CKACQ---AVLNGEYMGKDAVPYC 242
Query: 404 PMCFESTTGL 413
C++ G+
Sbjct: 243 EKCYQKGFGV 252
>gi|57085155|ref|XP_536411.1| PREDICTED: similar to mKIAA0613 protein
[Canis familiaris]
Length = 5432
Score = 38.5 bits (88), Expect = 0.53
Identities = 18/53 (33%), Positives = 26/53 (48%), Gaps = 6/53 (11%)
Query: 350 CAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAY 402
CA C+ + + AL + WH CF +CA C+KPF N ++D Y
Sbjct: 5315 CAKCNTKIMGEVMHALRQTWHTTCF----VCAACKKPF--GNSLFHMEDGEPY 5361
>gi|28573136|ref|NP_731392.2| CG31332-PB, isoform B [Drosophila
melanogaster]
gb|AAN13439.2| CG31332-PB, isoform B [Drosophila melanogaster]
Length = 749
Score = 38.5 bits (88), Expect = 0.53
Identities = 23/70 (32%), Positives = 32/70 (44%), Gaps = 8/70 (11%)
Query: 345 FSGDKCAACDALLSTN-SIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYH 403
+ + CA C LL ++ ALDR WH CF+ C CQ A+ N KD Y
Sbjct: 190 YDPNDCAGCGELLKEGQALVALDRQWHVSCFR----CKACQ---AVLNGEYMGKDAVPYC 242
Query: 404 PMCFESTTGL 413
C++ G+
Sbjct: 243 EKCYQKGFGV 252
>gi|24645465|ref|NP_731390.1| CG31332-PC, isoform C [Drosophila
melanogaster]
gb|AAN13438.1| CG31332-PC, isoform C [Drosophila melanogaster]
Length = 784
Score = 38.5 bits (88), Expect = 0.53
Identities = 23/70 (32%), Positives = 32/70 (44%), Gaps = 8/70 (11%)
Query: 345 FSGDKCAACDALLSTN-SIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYH 403
+ + CA C LL ++ ALDR WH CF+ C CQ A+ N KD Y
Sbjct: 206 YDPNDCAGCGELLKEGQALVALDRQWHVSCFR----CKACQ---AVLNGEYMGKDAVPYC 258
Query: 404 PMCFESTTGL 413
C++ G+
Sbjct: 259 EKCYQKGFGV 268
>gi|28573138|ref|NP_731389.2| CG31332-PD, isoform D [Drosophila
melanogaster]
gb|AAN13437.2| CG31332-PD, isoform D [Drosophila melanogaster]
Length = 760
Score = 38.5 bits (88), Expect = 0.53
Identities = 23/70 (32%), Positives = 32/70 (44%), Gaps = 8/70 (11%)
Query: 345 FSGDKCAACDALLSTN-SIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYH 403
+ + CA C LL ++ ALDR WH CF+ C CQ A+ N KD Y
Sbjct: 201 YDPNDCAGCGELLKEGQALVALDRQWHVSCFR----CKACQ---AVLNGEYMGKDAVPYC 253
Query: 404 PMCFESTTGL 413
C++ G+
Sbjct: 254 EKCYQKGFGV 263
>gi|45550723|ref|NP_649930.4| CG31352-PA [Drosophila melanogaster]
gb|AAF54427.4| CG31352-PA [Drosophila melanogaster]
gb|AAL68375.1| SD01878p [Drosophila melanogaster]
gb|AAL30427.1| DUNC-115l [Drosophila melanogaster]
Length = 806
Score = 38.5 bits (88), Expect = 0.53
Identities = 23/70 (32%), Positives = 32/70 (44%), Gaps = 8/70 (11%)
Query: 345 FSGDKCAACDALLSTN-SIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYH 403
+ + CA C LL ++ ALDR WH CF+ C CQ A+ N KD Y
Sbjct: 168 YDPNDCAGCGELLKEGQALVALDRQWHVSCFR----CKACQ---AVLNGEYMGKDAVPYC 220
Query: 404 PMCFESTTGL 413
C++ G+
Sbjct: 221 EKCYQKGFGV 230
>gi|50510545|dbj|BAD32258.1| mKIAA0613 protein [Mus musculus]
Length = 730
Score = 38.5 bits (88), Expect = 0.53
Identities = 18/53 (33%), Positives = 26/53 (48%), Gaps = 6/53 (11%)
Query: 350 CAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAY 402
CA C+ + + AL + WH CF +CA C+KPF N ++D Y
Sbjct: 613 CAKCNTKIMGEVMHALRQTWHTTCF----VCAACKKPF--GNSLFHMEDGEPY 659
>gi|28144147|gb|AAO26190.1| PDZ-LIM protein cypher3s [Mus musculus]
Length = 622
Score = 38.5 bits (88), Expect = 0.53
Identities = 18/53 (33%), Positives = 26/53 (48%), Gaps = 6/53 (11%)
Query: 350 CAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAY 402
CA C+ + + AL + WH CF +CA C+KPF N ++D Y
Sbjct: 505 CAKCNTKIMGEVMHALRQTWHTTCF----VCAACKKPF--GNSLFHMEDGEPY 551
>gi|28144145|gb|AAO26189.1| PDZ-LIM protein cypher1s [Mus musculus]
Length = 679
Score = 38.5 bits (88), Expect = 0.53
Identities = 18/53 (33%), Positives = 26/53 (48%), Gaps = 6/53 (11%)
Query: 350 CAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAY 402
CA C+ + + AL + WH CF +CA C+KPF N ++D Y
Sbjct: 562 CAKCNTKIMGEVMHALRQTWHTTCF----VCAACKKPF--GNSLFHMEDGEPY 608
>gi|28144143|gb|AAO26188.1| PDZ-LIM protein cypher3c [Mus musculus]
Length = 661
Score = 38.5 bits (88), Expect = 0.53
Identities = 18/53 (33%), Positives = 26/53 (48%), Gaps = 6/53 (11%)
Query: 350 CAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAY 402
CA C+ + + AL + WH CF +CA C+KPF N ++D Y
Sbjct: 544 CAKCNTKIMGEVMHALRQTWHTTCF----VCAACKKPF--GNSLFHMEDGEPY 590
>gi|11612596|gb|AAD42950.2| PDZ-LIM protein cypher1c [Mus musculus]
ref|NP_036048.2| LIM domain binding 3 [Mus musculus]
Length = 723
Score = 38.5 bits (88), Expect = 0.53
Identities = 18/53 (33%), Positives = 26/53 (48%), Gaps = 6/53 (11%)
Query: 350 CAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAY 402
CA C+ + + AL + WH CF +CA C+KPF N ++D Y
Sbjct: 606 CAKCNTKIMGEVMHALRQTWHTTCF----VCAACKKPF--GNSLFHMEDGEPY 652
>gi|50747966|ref|XP_421060.1| PREDICTED: similar to leupaxin [Gallus
gallus]
Length = 348
Score = 38.5 bits (88), Expect = 0.53
Identities = 22/64 (34%), Positives = 29/64 (44%), Gaps = 6/64 (9%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMCFE 408
KC C+ L+ N + AL WH ECF +CA C F +N S + R Y + F
Sbjct: 232 KCQGCERPLTDNYLSALQGVWHPECF----VCADCLSSF--TNGSFFELEGRPYCELHFH 285
Query: 409 STTG 412
G
Sbjct: 286 QRQG 289
>gi|55732104|emb|CAH92758.1| hypothetical protein [Pongo pygmaeus]
Length = 444
Score = 38.5 bits (88), Expect = 0.53
Identities = 21/67 (31%), Positives = 35/67 (51%), Gaps = 1/67 (1%)
Query: 178 EAAKNFSLKGRKEEEVKNYRGASQCYEEACNYYLMAIKSEPD-PTLKKNLSDEAKIYLDR 236
+ A + + K +E++ NY A Q Y+ A Y+L +K E K+++ + YLDR
Sbjct: 9 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAQCTEYLDR 68
Query: 237 IEVLKPF 243
E LK +
Sbjct: 69 AEKLKEY 75
>gi|6969631|gb|AAF33848.1| oracle 2 protein [Mus musculus]
Length = 661
Score = 38.5 bits (88), Expect = 0.53
Identities = 18/53 (33%), Positives = 26/53 (48%), Gaps = 6/53 (11%)
Query: 350 CAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAY 402
CA C+ + + AL + WH CF +CA C+KPF N ++D Y
Sbjct: 544 CAKCNTKIMGEVMHALRQTWHTTCF----VCAACKKPF--GNSLFHMEDGEPY 590
>gi|6969629|gb|AAF33847.1| oracle 1 protein [Mus musculus]
Length = 723
Score = 38.5 bits (88), Expect = 0.53
Identities = 18/53 (33%), Positives = 26/53 (48%), Gaps = 6/53 (11%)
Query: 350 CAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAY 402
CA C+ + + AL + WH CF +CA C+KPF N ++D Y
Sbjct: 606 CAKCNTKIMGEVMHALRQTWHTTCF----VCAACKKPF--GNSLFHMEDGEPY 652
>gi|7963882|gb|AAF71368.1| neuronal specific transcription factor
DAT1 [Homo sapiens]
Length = 125
Score = 38.5 bits (88), Expect = 0.53
Identities = 23/72 (31%), Positives = 32/72 (43%), Gaps = 15/72 (20%)
Query: 350 CAACDALLSTNSI-KALDRNWHAEC-------------FQVSIICAGCQKPFALSNLSLK 395
CA C+ + + KALD+ WH +C F V+ CA C K + ++
Sbjct: 13 CAGCNRKIKDRYLLKALDKYWHEDCPKCACCDCRWERLFGVTGNCAACSKLIPAFEMVMR 72
Query: 396 VKDNRAYHPMCF 407
KDN YH CF
Sbjct: 73 AKDN-VYHLDCF 83
>gi|47229955|emb|CAG10369.1| unnamed protein product [Tetraodon
nigroviridis]
Length = 277
Score = 38.5 bits (88), Expect = 0.53
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMCFE 408
+C AC ++T + ++ WH ECF +C C+K LS ++N Y CF
Sbjct: 163 QCCACKKAITTGGVTYQEKPWHRECF----LCISCRK--QLSGQRFTTRENYPYCLECFS 216
Query: 409 S 409
+
Sbjct: 217 N 217
>gi|39589329|emb|CAE74358.1| Hypothetical protein CBG22081
[Caenorhabditis briggsae]
Length = 146
Score = 38.5 bits (88), Expect = 0.53
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 176 AYEAAKNFSLKGRKEEEVKNYRGASQCYEEACNYYLMAIKSEPDPTLKKN-LSDEAKIYL 234
A + A K +E+ Y A + Y++A Y+L AIK E +KN + D+ YL
Sbjct: 5 ALQKAIELVTKATEEDTAGKYDAALRFYDQAIEYFLHAIKYESQGDKQKNAIRDKVAQYL 64
Query: 235 DRIEVLKPF 243
+R E +K F
Sbjct: 65 NRAEQIKSF 73
>gi|37926025|gb|AAP59551.1| cell migration-inducing 1 [Homo sapiens]
gb|AAG01471.1| vacuolar protein sorting factor 4B [Homo sapiens]
ref|NP_004860.2| vacuolar protein sorting factor 4B [Homo sapiens]
gb|AAH39574.1| VPS4B protein [Homo sapiens]
gb|AAG33022.1| VPS4-2 ATPase [Homo sapiens]
sp|O75351|SKD1_HUMAN SKD1 protein (Vacuolar sorting protein 4b)
Length = 444
Score = 38.1 bits (87), Expect = 0.69
Identities = 21/67 (31%), Positives = 35/67 (51%), Gaps = 1/67 (1%)
Query: 178 EAAKNFSLKGRKEEEVKNYRGASQCYEEACNYYLMAIKSEPD-PTLKKNLSDEAKIYLDR 236
+ A + + K +E++ NY A Q Y+ A Y+L +K E K+++ + YLDR
Sbjct: 9 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDR 68
Query: 237 IEVLKPF 243
E LK +
Sbjct: 69 AEKLKEY 75
>gi|29841364|gb|AAP06396.1| similar to NM_031677 four and a half LIM
domains 2 in Rattus norvegicus [Schistosoma japonicum]
Length = 120
Score = 38.1 bits (87), Expect = 0.69
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 350 CAACDALLSTNSI-KALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMCFE 408
CA C ++ SI ALD+ WH ECF +C C++ L++ S VK++ Y C +
Sbjct: 7 CAKCARPFTSGSILSALDKKWHPECF----VCTICKR--TLADQSFHVKNDDPYCANCLK 60
Query: 409 STTGLSQEEIRTFVGSSKQ 427
R + S+Q
Sbjct: 61 ENFQPRCATCRNIIDPSEQ 79
>gi|34189286|gb|AAH09692.1| VPS4B protein [Homo sapiens]
Length = 81
Score = 38.1 bits (87), Expect = 0.69
Identities = 21/67 (31%), Positives = 35/67 (51%), Gaps = 1/67 (1%)
Query: 178 EAAKNFSLKGRKEEEVKNYRGASQCYEEACNYYLMAIKSEPD-PTLKKNLSDEAKIYLDR 236
+ A + + K +E++ NY A Q Y+ A Y+L +K E K+++ + YLDR
Sbjct: 9 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDR 68
Query: 237 IEVLKPF 243
E LK +
Sbjct: 69 AEKLKEY 75
>gi|21666433|gb|AAM73706.1| actin-binding LIM protein 1 medium
isoform [Mus musculus]
Length = 701
Score = 38.1 bits (87), Expect = 0.69
Identities = 21/83 (25%), Positives = 44/83 (52%), Gaps = 7/83 (8%)
Query: 347 GDKCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMC 406
G KC AC ++ ++A D+++H C + C+ C + F + ++ + +HP C
Sbjct: 206 GVKCEACHQFITGKVLEAGDKHYHPSCAR----CSRCNQMFT-EGEEMYLQGSTVWHPDC 260
Query: 407 FESTTGLSQEEIRTFVGSSKQLF 429
+ST ++E++R SS+ ++
Sbjct: 261 KQSTK--TEEKLRPTRTSSESIY 281
>gi|51173713|ref|NP_001003407.1| actin-binding LIM protein 1 isoform
b [Homo sapiens]
emb|CAI10910.1| actin binding LIM protein 1 [Homo sapiens]
emb|CAI40141.1| actin binding LIM protein 1 [Homo sapiens]
Length = 718
Score = 38.1 bits (87), Expect = 0.69
Identities = 21/83 (25%), Positives = 44/83 (52%), Gaps = 7/83 (8%)
Query: 347 GDKCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMC 406
G KC AC ++ ++A D+++H C + C+ C + F + ++ + +HP C
Sbjct: 222 GVKCEACHQFITGKVLEAGDKHYHPSCAR----CSRCNQMFT-EGEEMYLQGSTVWHPDC 276
Query: 407 FESTTGLSQEEIRTFVGSSKQLF 429
+ST ++E++R SS+ ++
Sbjct: 277 KQSTK--TEEKLRPTRTSSESIY 297
>gi|51871614|ref|NP_001004112.1| zgc:92375 [Danio rerio]
gb|AAH79524.1| Zgc:92375 [Danio rerio]
Length = 280
Score = 38.1 bits (87), Expect = 0.69
Identities = 18/65 (27%), Positives = 30/65 (45%), Gaps = 9/65 (13%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMCFE 408
+C AC ++T + D+ WH ECF C GC++ A + +R +P C +
Sbjct: 162 QCCACKKAITTGGVTYHDKPWHRECF----TCIGCKRQLAGQRFT-----SRENYPYCLD 212
Query: 409 STTGL 413
+ L
Sbjct: 213 CFSNL 217
>gi|3879677|emb|CAA90991.1| Hypothetical protein T11B7.4d
[Caenorhabditis elegans]
emb|CAA90978.1| Hypothetical protein T11B7.4d [Caenorhabditis elegans]
pir||T19156 probable metal binding protein T11B7.4a - Caenorhabditis elegans
ref|NP_501533.1| EATing: abnormal pharyngeal pumping EAT-1, enigma (157.4 kD) (eat-1)
[Caenorhabditis elegans]
Length = 1424
Score = 38.1 bits (87), Expect = 0.69
Identities = 17/47 (36%), Positives = 24/47 (50%), Gaps = 4/47 (8%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLK 395
+C C + ++ + AL + WH CF CA CQKPF S L+
Sbjct: 1311 RCNKCSKPIISDCLNALQKKWHPTCF----TCAHCQKPFGNSAFYLE 1353
>gi|37936023|emb|CAE52902.1| Hypothetical protein T11B7.4c
[Caenorhabditis elegans]
emb|CAE52905.1| Hypothetical protein T11B7.4c [Caenorhabditis elegans]
Length = 771
Score = 38.1 bits (87), Expect = 0.69
Identities = 17/47 (36%), Positives = 24/47 (50%), Gaps = 4/47 (8%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLK 395
+C C + ++ + AL + WH CF CA CQKPF S L+
Sbjct: 658 RCNKCSKPIISDCLNALQKKWHPTCF----TCAHCQKPFGNSAFYLE 700
>gi|37936025|emb|CAB54312.2| Hypothetical protein T11B7.4b
[Caenorhabditis elegans]
emb|CAB54190.2| Hypothetical protein T11B7.4b [Caenorhabditis elegans]
Length = 645
Score = 38.1 bits (87), Expect = 0.69
Identities = 17/47 (36%), Positives = 24/47 (50%), Gaps = 4/47 (8%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLK 395
+C C + ++ + AL + WH CF CA CQKPF S L+
Sbjct: 532 RCNKCSKPIISDCLNALQKKWHPTCF----TCAHCQKPFGNSAFYLE 574
>gi|55859665|emb|CAI10908.1| actin binding LIM protein 1 [Homo
sapiens]
emb|CAI40140.1| actin binding LIM protein 1 [Homo sapiens]
ref|NP_002304.3| actin-binding LIM protein 1 isoform a [Homo sapiens]
Length = 778
Score = 38.1 bits (87), Expect = 0.69
Identities = 21/83 (25%), Positives = 44/83 (52%), Gaps = 7/83 (8%)
Query: 347 GDKCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMC 406
G KC AC ++ ++A D+++H C + C+ C + F + ++ + +HP C
Sbjct: 282 GVKCEACHQFITGKVLEAGDKHYHPSCAR----CSRCNQMFT-EGEEMYLQGSTVWHPDC 336
Query: 407 FESTTGLSQEEIRTFVGSSKQLF 429
+ST ++E++R SS+ ++
Sbjct: 337 KQSTK--TEEKLRPTRTSSESIY 357
>gi|55859664|emb|CAI10907.1| actin binding LIM protein 1 [Homo
sapiens]
emb|CAI40133.1| actin binding LIM protein 1 [Homo sapiens]
Length = 702
Score = 38.1 bits (87), Expect = 0.69
Identities = 21/83 (25%), Positives = 44/83 (52%), Gaps = 7/83 (8%)
Query: 347 GDKCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMC 406
G KC AC ++ ++A D+++H C + C+ C + F + ++ + +HP C
Sbjct: 206 GVKCEACHQFITGKVLEAGDKHYHPSCAR----CSRCNQMFT-EGEEMYLQGSTVWHPDC 260
Query: 407 FESTTGLSQEEIRTFVGSSKQLF 429
+ST ++E++R SS+ ++
Sbjct: 261 KQSTK--TEEKLRPTRTSSESIY 281
>gi|55859663|emb|CAI10906.1| actin binding LIM protein 1 [Homo
sapiens]
emb|CAI40131.1| actin binding LIM protein 1 [Homo sapiens]
Length = 651
Score = 38.1 bits (87), Expect = 0.69
Identities = 21/83 (25%), Positives = 44/83 (52%), Gaps = 7/83 (8%)
Query: 347 GDKCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMC 406
G KC AC ++ ++A D+++H C + C+ C + F + ++ + +HP C
Sbjct: 190 GVKCEACHQFITGKVLEAGDKHYHPSCAR----CSRCNQMFT-EGEEMYLQGSTVWHPDC 244
Query: 407 FESTTGLSQEEIRTFVGSSKQLF 429
+ST ++E++R SS+ ++
Sbjct: 245 KQSTK--TEEKLRPTRTSSESIY 265
>gi|50759730|ref|XP_417754.1| PREDICTED: similar to four and a half
LIM domains 3 [Gallus gallus]
Length = 279
Score = 38.1 bits (87), Expect = 0.69
Identities = 18/59 (30%), Positives = 25/59 (41%), Gaps = 6/59 (10%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMCF 407
+C C L+ + D WH ECF +C GC P L+ +D+ Y CF
Sbjct: 161 RCTRCKKTLTKGGVTYRDEPWHKECF----VCTGCMTP--LAGQQFTSQDDNPYCIKCF 213
>gi|50754862|ref|XP_414527.1| PREDICTED: similar to actin binding
LIM protein family, member 3 [Gallus gallus]
Length = 1514
Score = 38.1 bits (87), Expect = 0.69
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 347 GDKCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSN 391
G +C +C ++ I AL R +H +CF +C+ C+KPF + +
Sbjct: 810 GTRCDSCGDFITGEVISALGRTYHPKCF----VCSTCRKPFPIGD 850
>gi|50744680|ref|XP_419829.1| PREDICTED: similar to LIM-only protein
ACT [Gallus gallus]
Length = 279
Score = 38.1 bits (87), Expect = 0.69
Identities = 19/59 (32%), Positives = 29/59 (48%), Gaps = 6/59 (10%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMCF 407
+C +C ++++ + D+ WH ECF +CAGC+ LS KD Y CF
Sbjct: 162 RCYSCKKVITSGGVAYHDQPWHKECF----VCAGCKT--QLSGQRFVSKDEYPYCVDCF 214
>gi|28972049|dbj|BAC65478.1| mKIAA0059 protein [Mus musculus]
Length = 670
Score = 38.1 bits (87), Expect = 0.69
Identities = 21/83 (25%), Positives = 44/83 (52%), Gaps = 7/83 (8%)
Query: 347 GDKCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMC 406
G KC AC ++ ++A D+++H C + C+ C + F + ++ + +HP C
Sbjct: 222 GVKCEACHQFITGKVLEAGDKHYHPSCAR----CSRCNQMFT-EGEEMYLQGSTVWHPDC 276
Query: 407 FESTTGLSQEEIRTFVGSSKQLF 429
+ST ++E++R SS+ ++
Sbjct: 277 KQSTK--TEEKLRPTRTSSESIY 297
>gi|20522012|dbj|BAA06681.2| KIAA0059 [Homo sapiens]
Length = 724
Score = 38.1 bits (87), Expect = 0.69
Identities = 21/83 (25%), Positives = 44/83 (52%), Gaps = 7/83 (8%)
Query: 347 GDKCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMC 406
G KC AC ++ ++A D+++H C + C+ C + F + ++ + +HP C
Sbjct: 228 GVKCEACHQFITGKVLEAGDKHYHPSCAR----CSRCNQMFT-EGEEMYLQGSTVWHPDC 282
Query: 407 FESTTGLSQEEIRTFVGSSKQLF 429
+ST ++E++R SS+ ++
Sbjct: 283 KQSTK--TEEKLRPTRTSSESIY 303
>gi|3329390|gb|AAC39874.1| SKD1 homolog [Homo sapiens]
Length = 444
Score = 38.1 bits (87), Expect = 0.69
Identities = 21/67 (31%), Positives = 35/67 (51%), Gaps = 1/67 (1%)
Query: 178 EAAKNFSLKGRKEEEVKNYRGASQCYEEACNYYLMAIKSEPD-PTLKKNLSDEAKIYLDR 236
+ A + + K +E++ NY A Q Y+ A Y+L +K E K+++ + YLDR
Sbjct: 9 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDR 68
Query: 237 IEVLKPF 243
E LK +
Sbjct: 69 AEKLKEY 75
>gi|2337952|gb|AAC51676.1| actin-binding double-zinc-finger protein
[Homo sapiens]
Length = 778
Score = 38.1 bits (87), Expect = 0.69
Identities = 21/83 (25%), Positives = 44/83 (52%), Gaps = 7/83 (8%)
Query: 347 GDKCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMC 406
G KC AC ++ ++A D+++H C + C+ C + F + ++ + +HP C
Sbjct: 282 GVKCEACHQFITGKVLEAGDKHYHPSCAR----CSRCNQMFT-EGEEMYLQGSTVWHPDC 336
Query: 407 FESTTGLSQEEIRTFVGSSKQLF 429
+ST ++E++R SS+ ++
Sbjct: 337 KQSTK--TEEKLRPTRTSSESIY 357
>gi|7511566|pir||T19157 probable metal binding protein T11B7.4b -
Caenorhabditis elegans
ref|NP_501534.1| EATing: abnormal pharyngeal pumping EAT-1, enigma (149.7 kD) (eat-1)
[Caenorhabditis elegans]
Length = 1353
Score = 38.1 bits (87), Expect = 0.69
Identities = 17/47 (36%), Positives = 24/47 (50%), Gaps = 4/47 (8%)
Query: 349 KCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLK 395
+C C + ++ + AL + WH CF CA CQKPF S L+
Sbjct: 1240 RCNKCSKPIISDCLNALQKKWHPTCF----TCAHCQKPFGNSAFYLE 1282
>gi|56404432|sp|O14639|ALM1_HUMAN Actin-binding LIM protein 1
(Actin-binding LIM protein family member 1) (abLIM-1)
(Actin-binding double-zinc-finger protein) (LIMAB1)
(Limatin)
Length = 778
Score = 38.1 bits (87), Expect = 0.69
Identities = 21/83 (25%), Positives = 44/83 (52%), Gaps = 7/83 (8%)
Query: 347 GDKCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMC 406
G KC AC ++ ++A D+++H C + C+ C + F + ++ + +HP C
Sbjct: 282 GVKCEACHQFITGKVLEAGDKHYHPSCAR----CSRCNQMFT-EGEEMYLQGSTVWHPDC 336
Query: 407 FESTTGLSQEEIRTFVGSSKQLF 429
+ST ++E++R SS+ ++
Sbjct: 337 KQSTK--TEEKLRPTRTSSESIY 357
>gi|55957481|emb|CAI16879.1| LIM homeobox 3 [Homo sapiens]
ref|NP_835258.1| LIM homeobox protein 3 isoform a [Homo sapiens]
gb|AAL26314.1| LIM homeobox protein 3 [Homo sapiens]
gb|AAF36808.1| LIM homeobox protein 3 isoform a [Homo sapiens]
sp|Q9UBR4|LHX3_HUMAN LIM/homeobox protein Lhx3
Length = 397
Score = 37.7 bits (86), Expect = 0.90
Identities = 17/40 (42%), Positives = 24/40 (59%), Gaps = 5/40 (12%)
Query: 350 CAACDA-LLSTNSIKALDRNWHAECFQVSIICAGCQKPFA 388
CA CD +L +KALDR+WH++C + C+ C P A
Sbjct: 31 CAGCDQHILDRFILKALDRHWHSKCLK----CSDCHTPLA 66
>gi|38016178|ref|NP_848803.2| actin-binding LIM protein 1 [Mus
musculus]
gb|AAM73705.1| actin-binding LIM protein 1 long isoform [Mus musculus]
sp|Q8K4G5|ALM1_MOUSE Actin-binding LIM protein 1 (Actin-binding LIM protein family
member 1) (abLIM-1)
Length = 861
Score = 37.7 bits (86), Expect = 0.90
Identities = 25/97 (25%), Positives = 48/97 (48%), Gaps = 9/97 (9%)
Query: 347 GDKCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAYHPMC 406
G KC AC ++ ++A D+++H C + C+ C + F + ++ + +HP C
Sbjct: 282 GVKCEACHQFITGKVLEAGDKHYHPSCAR----CSRCNQMFT-EGEEMYLQGSTVWHPDC 336
Query: 407 FESTTGLSQEEIR--TFVGSSKQLFFSIQLQRKFYRA 441
+ST ++E++R SS F+ L R+ R+
Sbjct: 337 KQSTK--TEEKLRPPNIPRSSSDFFYPKSLIRRTGRS 371
>gi|55957480|emb|CAI16878.1| LIM homeobox 3 [Homo sapiens]
ref|NP_055379.1| LIM homeobox protein 3 isoform b [Homo sapiens]
gb|AAF36809.1| LIM homeobox protein 3 isoform b [Homo sapiens]
Length = 402
Score = 37.7 bits (86), Expect = 0.90
Identities = 17/40 (42%), Positives = 24/40 (59%), Gaps = 5/40 (12%)
Query: 350 CAACDA-LLSTNSIKALDRNWHAECFQVSIICAGCQKPFA 388
CA CD +L +KALDR+WH++C + C+ C P A
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLK----CSDCHTPLA 71
>gi|50749126|ref|XP_421495.1| PREDICTED: similar to PDZ-LIM protein
cypher1s [Gallus gallus]
Length = 813
Score = 37.7 bits (86), Expect = 0.90
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 345 FSGDKCAACDALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLKVKDNRAY 402
F C+ C + + AL + WH CF +CA C+KPF N ++D Y
Sbjct: 691 FFAPTCSRCHTKIMGEVMHALRQTWHTSCF----VCAACKKPF--GNSLFHMEDGEPY 742
>gi|4091889|gb|AAC99331.1| LIM homeodomain transcription factor [Sus
scrofa]
sp|O97581|LHX3_PIG LIM/homeobox protein Lhx3 (Homeobox protein LIM-3) (Homeobox
protein P-LIM) (LIM homeobox protein 3)
Length = 383
Score = 37.7 bits (86), Expect = 0.90
Identities = 17/40 (42%), Positives = 24/40 (59%), Gaps = 5/40 (12%)
Query: 350 CAACDA-LLSTNSIKALDRNWHAECFQVSIICAGCQKPFA 388
CA CD +L +KALDR+WH++C + C+ C P A
Sbjct: 16 CAGCDQHILDRFILKALDRHWHSKCLK----CSDCHTPLA 51
>gi|20502369|dbj|BAB91364.1| LIM homeodomain protein [Branchiostoma
belcheri]
Length = 402
Score = 37.7 bits (86), Expect = 0.90
Identities = 17/37 (45%), Positives = 23/37 (61%), Gaps = 5/37 (13%)
Query: 349 KCAACD-ALLSTNSIKALDRNWHAECFQVSIICAGCQ 384
KCA C+ +L +K LDR+WHA+C Q C+ CQ
Sbjct: 40 KCAGCEQVILDRFILKVLDRSWHAKCLQ----CSDCQ 72
>gi|6137602|pdb|1CXX|A Chain A, Mutant R122a Of Quail Cysteine And
Glycine-Rich Protein, Nmr, Minimized Structure
Length = 113
Score = 37.7 bits (86), Expect = 0.90
Identities = 23/77 (29%), Positives = 36/77 (45%), Gaps = 8/77 (10%)
Query: 338 TSSLPLTFSG-DKCAAC-DALLSTNSIKALDRNWHAECFQVSIICAGCQKPFALSNLSLK 395
TS F G +KC+AC D++ + + + WH CF+ CA C K +L + +L
Sbjct: 26 TSKFAQKFGGAEKCSACGDSVYAAEKVIGAGKPWHKNCFR----CAKCGK--SLESTTLT 79
Query: 396 VKDNRAYHPMCFESTTG 412
K+ Y C+ G
Sbjct: 80 EKEGEIYCKGCYAKNFG 96
Database: /home/dicty1/resource/WorkingDBs//nr-clean
Posted date: Mar 10, 2005 12:10 PM
Number of letters in database: 788,375,511
Number of sequences in database: 2,329,665
Lambda K H
0.317 0.132 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 571,489,785
Number of Sequences: 2329665
Number of extensions: 19585520
Number of successful extensions: 47092
Number of sequences better than 1.0: 141
Number of HSP's better than 1.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 119
Number of HSP's that attempted gapping in prelim test: 46867
Number of HSP's gapped (non-prelim): 325
length of query: 564
length of database: 788,375,511
effective HSP length: 133
effective length of query: 431
effective length of database: 478,530,066
effective search space: 206246458446
effective search space used: 206246458446
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 86 (37.7 bits)
BLASTP 2.2.1 [Jul-12-2001]