Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DDB0186648
(1197 letters)
Database: /home/dicty1/resource/WorkingDBs//nr-clean
2,329,665 sequences; 788,375,511 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|6562677|emb|CAB62838.1| hypothetical protein L5529.07 [Leishm... 56 8e-06
gi|54020141|ref|YP_115833.1| hypothetical protein mhp321 [Mycopl... 41 0.25
gi|23508952|ref|NP_701620.1| hypothetical protein PFL1290w [Plas... 40 0.43
gi|6968982|emb|CAB73553.1| paralysed flagellum protein [Campylob... 40 0.57
gi|57238578|ref|YP_179709.1| paralyzed flagella protein PflA [Ca... 40 0.57
>gi|6562677|emb|CAB62838.1| hypothetical protein L5529.07
[Leishmania major]
Length = 1104
Score = 55.8 bits (133), Expect = 8e-06
Identities = 53/271 (19%), Positives = 107/271 (38%), Gaps = 6/271 (2%)
Query: 526 DVDSMTFNNGVFRMLGAKFSFIIELIVSKTIIFTVPXXXXXXXXXXXXXXXXXXXXKRFT 585
+ + F + R G + II ++V +T+ FTVP FT
Sbjct: 420 NAEERQFELAMIRAQGMSRTQIIGILVMQTLAFTVPGTAVGVLLACATNAILERMLSNFT 479
Query: 586 NSDEISNYLTVDSIVYSILLGFLIPMVSLILPIRKALSFSLGEQLDTSRSNISSSHQITT 645
+ + +IV IL+G L+P+V+ P+++ALS SL + LD R + +H +
Sbjct: 480 KVPARLGDVPITAIVIGILMGLLLPLVATYSPVKRALSSSLRDALDIYRQVYNEAH-VKA 538
Query: 646 IDKDSTDSEYRKFXXXXXXXXXXXXXXXCFLLPKXXXXXXXXXXXXXXXXXXXXXXXXXI 705
I ++ R + +L+P
Sbjct: 539 IRLEAMG--LRMWQILLGLFLVFAGFLVYYLMPLSFIFSNMMMFFILLDFVLICMIAG-- 594
Query: 706 FLMMNFHLIISKTLVYLITLIDPFAKNIIRIILYKNLISHKKKNKSTMFMFGVSVSLIII 765
L M +++ V+++ L+ + ++ ++ KNL SH+ +N M +SV+ ++
Sbjct: 595 -LCMMTYVVQGPAEVFVLYLLLWGRETRLQTLIRKNLRSHRDRNSKAYMMVLLSVACLVA 653
Query: 766 INCLFLVQVEISNASNKQYFGSLLKIETSTF 796
+F + IS+ + G+ + + + +F
Sbjct: 654 SGMMFSMMSTISSQLAELTTGAPVTVVSKSF 684
>gi|54020141|ref|YP_115833.1| hypothetical protein mhp321
[Mycoplasma hyopneumoniae 232]
gb|AAV27515.1| hypothetical protein mhp321 [Mycoplasma hyopneumoniae 232]
Length = 1975
Score = 40.8 bits (94), Expect = 0.25
Identities = 51/221 (23%), Positives = 99/221 (44%), Gaps = 30/221 (13%)
Query: 740 KNLISHKKKNKSTMFMFGVSVSLIIIINCLFLVQV---EISNASNKQYFGSLLKIETSTF 796
K I +K NK + F + +L+I+ N + ++ E S SN + F +L+ S
Sbjct: 201 KITILYKNDNKEEIQNF--TSNLLILENIIAQIKSIKNEYSTESN-EIFNNLITNFNSNI 257
Query: 797 IKREDLSNITQCLDRIIDDENNGLDSYSLRSMEFSEFSQPDKKSIVSDLAKTKTLKSSLW 856
++N+T + + +NN L+ +S E ++ Q KKS + D+ K L ++
Sbjct: 258 NSSSLINNVTDSIRNFKNIQNN-LEKIVNKSAEKNQKLQELKKSAILDVEKAANLSQTVQ 316
Query: 857 A---------VGPTYFSEL---MEDYFQVSSVSKNLKTDK-----DVDFNQNGDMTDLST 899
+ + + S++ + + V+ + +LKT+K + ++ + + T+L
Sbjct: 317 SNFKEKINNSITESQISQIKTFISELEHVAPLLSSLKTEKTRLENEPNYLNSENKTELD- 375
Query: 900 ILYSKDSMNKLILTQSQKKLMYLDEKGGPDEFLLSNYIEIN 940
D MN L L + KL DE ++ LSN + +N
Sbjct: 376 -----DLMNSLNLLDQENKLALNDEISTNTKYFLSNVLTVN 411
>gi|23508952|ref|NP_701620.1| hypothetical protein PFL1290w
[Plasmodium falciparum 3D7]
gb|AAN36344.1| hypothetical protein PFL1290w [Plasmodium falciparum 3D7]
Length = 636
Score = 40.0 bits (92), Expect = 0.43
Identities = 36/113 (31%), Positives = 55/113 (47%), Gaps = 11/113 (9%)
Query: 878 KNLKTDKDVDFNQNGDMTDLST--ILYSKDSMNKLILTQSQKKLMYLDEKGGPDEFLLSN 935
KN K ++ N+N D +++ + IL S+DS N + +KKL Y DE+ DE
Sbjct: 14 KNKKGNEKNKANKNIDDSEIESDDILSSQDSDNNVTFLNKKKKLNY-DEEDYSDE----- 67
Query: 936 YIEINNYTKID-PSGKNQQQNVTFNWIGRNVMKPLAYLKTAGTFSVSEIPDED 987
+INN +D + N+ +NV N R + YLK G S E +E+
Sbjct: 68 --DINNNKNVDEENDDNEYENVFNNPEERKIYLAKKYLKDMGIESSDEDNEEE 118
>gi|6968982|emb|CAB73553.1| paralysed flagellum protein
[Campylobacter jejuni subsp. jejuni NCTC 11168]
pir||I40776 paralysed flagellum protein Cj1565c [imported] - Campylobacter
jejuni (strain NCTC 11168)
ref|NP_282693.1| paralysed flagellum protein [Campylobacter jejuni subsp. jejuni
NCTC 11168]
gb|AAA86822.1| required for flagellar function
Length = 788
Score = 39.7 bits (91), Expect = 0.57
Identities = 57/214 (26%), Positives = 88/214 (40%), Gaps = 32/214 (14%)
Query: 732 NIIRIILYKNLISHKKKNKSTMFMFGVSV----SLIIIINCLFLVQVEISNASNKQYFGS 787
N I+ YK+LI KK +T F+ ++ + I NC+ NA+N S
Sbjct: 497 NFSAILAYKDLIESKKIPNATQFLEKAAINDLKNAIKADNCI--------NAANIFMRFS 548
Query: 788 LLKIETSTFIKREDL------SNITQCLDRIIDDENNGLDSYSLR--SMEFSEFSQPDKK 839
I K++ L SN+ Q LD I + N Y L+ S+ F P
Sbjct: 549 AYDIGQKIENKKQMLACLIRTSNVEQALDYIDKNYNEDSIFYGLQKASILFDNKQYPQVI 608
Query: 840 SIVSDLAKTKTLKSSLWAVGPTYFSEL----MEDYFQVSSVSKNLKTDKDVDFNQNGDMT 895
I D+A ++ LKS Y L + DY Q + + L++ F N M
Sbjct: 609 KISKDIANSRILKSDDENFKAYYLQFLSLLRLNDYNQAIKILQILES-----FPMNFSMV 663
Query: 896 DL--STILYSKD-SMNKLILTQSQKKLMYLDEKG 926
+ + + Y+ D +M ILT + K + Y + KG
Sbjct: 664 EAYDALLSYANDHNMQTTILTYAPKAIDYQNFKG 697
>gi|57238578|ref|YP_179709.1| paralyzed flagella protein PflA
[Campylobacter jejuni RM1221]
gb|AAW36161.1| paralyzed flagella protein PflA [Campylobacter jejuni RM1221]
Length = 788
Score = 39.7 bits (91), Expect = 0.57
Identities = 57/214 (26%), Positives = 88/214 (40%), Gaps = 32/214 (14%)
Query: 732 NIIRIILYKNLISHKKKNKSTMFMFGVSV----SLIIIINCLFLVQVEISNASNKQYFGS 787
N I+ YK+LI KK +T F+ ++ + I NC+ NA+N S
Sbjct: 497 NFSAILAYKDLIESKKIPNATQFLEKAAINDLKNAIKADNCI--------NAANIFMRFS 548
Query: 788 LLKIETSTFIKREDL------SNITQCLDRIIDDENNGLDSYSLR--SMEFSEFSQPDKK 839
I K++ L SN+ Q LD I + N Y L+ S+ F P
Sbjct: 549 AYDIGQKIENKKQMLACLIRTSNVEQALDYIDKNYNEDSIFYGLQKASILFDNKQYPQVI 608
Query: 840 SIVSDLAKTKTLKSSLWAVGPTYFSEL----MEDYFQVSSVSKNLKTDKDVDFNQNGDMT 895
I D+A ++ LKS Y L + DY Q + + L++ F N M
Sbjct: 609 KISKDIANSRILKSDDENFKAYYLQFLSLLRLNDYNQAIKILQILES-----FPMNFSMV 663
Query: 896 DL--STILYSKD-SMNKLILTQSQKKLMYLDEKG 926
+ + + Y+ D +M ILT + K + Y + KG
Sbjct: 664 EAYDALLSYANDHNMQTTILTYAPKAIDYQNFKG 697
Database: /home/dicty1/resource/WorkingDBs//nr-clean
Posted date: Mar 10, 2005 12:10 PM
Number of letters in database: 788,375,511
Number of sequences in database: 2,329,665
Lambda K H
0.320 0.138 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,365,409,506
Number of Sequences: 2329665
Number of extensions: 49984630
Number of successful extensions: 122314
Number of sequences better than 1.0: 5
Number of HSP's better than 1.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 122310
Number of HSP's gapped (non-prelim): 7
length of query: 1197
length of database: 788,375,511
effective HSP length: 139
effective length of query: 1058
effective length of database: 464,552,076
effective search space: 491496096408
effective search space used: 491496096408
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 89 (38.9 bits)
BLASTP 2.2.1 [Jul-12-2001]