Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DDB0186475
(63 letters)
Database: /home/dicty1/resource/WorkingDBs//nr-clean
2,329,665 sequences; 788,375,511 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|50939475|ref|XP_479265.1| vesicle soluble NSF attachment prot... 35 0.36
gi|53829389|gb|AAU94637.1| SNARE 13 [Oryza sativa (japonica cult... 35 0.36
gi|53829383|gb|AAU94635.1| SNARE 11 [Oryza sativa (japonica cult... 35 0.36
gi|46228042|gb|EAK88941.1| possible t-snare domain, possible tra... 35 0.36
gi|54657527|gb|EAL36287.1| hypothetical protein Chro.30485 [Cryp... 35 0.36
gi|34896946|ref|NP_909819.1| putative vesicle soluble NSF attach... 35 0.47
gi|19569611|gb|AAL92119.1| NPSN12 [Arabidopsis thaliana] >gi|264... 35 0.47
gi|8778964|gb|AAD49774.2| F11A17.20 [Arabidopsis thaliana] >gi|2... 35 0.47
gi|53829387|gb|AAU94636.1| SNARE 12 [Oryza sativa (japonica cult... 35 0.62
>gi|50939475|ref|XP_479265.1| vesicle soluble NSF attachment protein
receptor-like protein [Oryza sativa (japonica
cultivar-group)]
dbj|BAC16405.1| vesicle soluble NSF attachment protein receptor-like protein [Oryza
sativa (japonica cultivar-group)]
Length = 266
Score = 35.4 bits (80), Expect = 0.36
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 4 QEEPIYRIKNDMDLIDSNLKLAPRQMRSIARKMATDKXXXXXXXXXXAGKNVVIVYK 60
Q E + RI N++D + +LK A + ++ I R++ATDK G +IV K
Sbjct: 177 QTEQMKRIGNELDSVHFSLKKASQMVKEIGRQVATDKCIMAFLFLIVCGVIAIIVVK 233
>gi|53829389|gb|AAU94637.1| SNARE 13 [Oryza sativa (japonica
cultivar-group)]
Length = 266
Score = 35.4 bits (80), Expect = 0.36
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 4 QEEPIYRIKNDMDLIDSNLKLAPRQMRSIARKMATDKXXXXXXXXXXAGKNVVIVYK 60
Q E + RI N++D + +LK A + ++ I R++ATDK G +IV K
Sbjct: 177 QTEQMKRIGNELDSVHFSLKKASQMVKEIGRQVATDKCIMAFLFLIVCGVIAIIVVK 233
>gi|53829383|gb|AAU94635.1| SNARE 11 [Oryza sativa (japonica
cultivar-group)]
dbj|BAD53572.1| putative NPSN12 [Oryza sativa (japonica cultivar-group)]
Length = 261
Score = 35.4 bits (80), Expect = 0.36
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 4 QEEPIYRIKNDMDLIDSNLKLAPRQMRSIARKMATDKXXXXXXXXXXAGKNVVIVYK 60
Q E + RI N++D I ++K A + ++ I R++ATD+ AG +IV K
Sbjct: 175 QTEQMSRIVNELDSIHFSIKKASQMVKEIGRQVATDRCIMALLFLIVAGVIAIIVVK 231
>gi|46228042|gb|EAK88941.1| possible t-snare domain, possible
transmembrane domain or GPI anchor signal at C-terminus
[Cryptosporidium parvum]
Length = 222
Score = 35.4 bits (80), Expect = 0.36
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 1 MNIQEEPIYRIKNDMDLIDSNLKLAPRQMRSIARKMATD 39
MN Q+E + RI+N++D + N+ A +++IAR ATD
Sbjct: 151 MNTQKEQLDRIRNELDNVKDNIYKANISLKAIARNTATD 189
>gi|54657527|gb|EAL36287.1| hypothetical protein Chro.30485
[Cryptosporidium hominis]
Length = 222
Score = 35.4 bits (80), Expect = 0.36
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 1 MNIQEEPIYRIKNDMDLIDSNLKLAPRQMRSIARKMATD 39
MN Q+E + RI+N++D + N+ A +++IAR ATD
Sbjct: 151 MNTQKEQLDRIRNELDNVKDNIYKANISLKAIARNTATD 189
>gi|34896946|ref|NP_909819.1| putative vesicle soluble NSF
attachment protein receptor [Oryza sativa]
gb|AAG46143.1| putative vesicle soluble NSF attachment protein receptor [Oryza
sativa]
Length = 275
Score = 35.0 bits (79), Expect = 0.47
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 4 QEEPIYRIKNDMDLIDSNLKLAPRQMRSIARKMATDKXXXXXXXXXXAGKNVVIVYK 60
Q E + RI N++D + +LK A + ++ I R++ATDK G +IV K
Sbjct: 181 QTEQMKRIGNELDTVHFSLKKASQLVKEIGRQVATDKCIMALLFLIVCGVIAIIVVK 237
>gi|19569611|gb|AAL92119.1| NPSN12 [Arabidopsis thaliana]
dbj|BAC41993.1| unknown protein [Arabidopsis thaliana]
gb|AAO63335.1| At1g48240 [Arabidopsis thaliana]
gb|AAF79516.1| F21D18.4 [Arabidopsis thaliana]
ref|NP_175258.2| novel plant SNARE 12 (NPSN12) [Arabidopsis thaliana]
sp|Q9LNH6|NS12_ARATH Novel plant SNARE 12 (AtNPSN12)
Length = 265
Score = 35.0 bits (79), Expect = 0.47
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 4 QEEPIYRIKNDMDLIDSNLKLAPRQMRSIARKMATDKXXXXXXXXXXAGKNVVIVYK 60
Q + + R+ ND+D I +LK A + ++ I R++ATDK G +I+ K
Sbjct: 180 QTDQMGRVVNDLDTIQFSLKKASQLVKEIGRQVATDKCIMAFLFLIVCGVIAIIIVK 236
>gi|8778964|gb|AAD49774.2| F11A17.20 [Arabidopsis thaliana]
pir||C96522 F11A17.20 [imported] - Arabidopsis thaliana
Length = 285
Score = 35.0 bits (79), Expect = 0.47
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 4 QEEPIYRIKNDMDLIDSNLKLAPRQMRSIARKMATDKXXXXXXXXXXAGKNVVIVYK 60
Q + + R+ ND+D I +LK A + ++ I R++ATDK G +I+ K
Sbjct: 200 QTDQMGRVVNDLDTIQFSLKKASQLVKEIGRQVATDKCIMAFLFLIVCGVIAIIIVK 256
>gi|53829387|gb|AAU94636.1| SNARE 12 [Oryza sativa (japonica
cultivar-group)]
Length = 275
Score = 34.7 bits (78), Expect = 0.62
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 4 QEEPIYRIKNDMDLIDSNLKLAPRQMRSIARKMATDKXXXXXXXXXXAGKNVVIVYK 60
Q E + RI N++D + +LK A + ++ I R++ATDK G +IV K
Sbjct: 181 QTERMKRIGNELDTVHFSLKKASQLVKEIGRQVATDKCIMALLFLIVCGVIAIIVVK 237
Database: /home/dicty1/resource/WorkingDBs//nr-clean
Posted date: Mar 10, 2005 12:10 PM
Number of letters in database: 788,375,511
Number of sequences in database: 2,329,665
Lambda K H
0.320 0.134 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,635,733
Number of Sequences: 2329665
Number of extensions: 1321154
Number of successful extensions: 3306
Number of sequences better than 1.0: 9
Number of HSP's better than 1.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3297
Number of HSP's gapped (non-prelim): 9
length of query: 63
length of database: 788,375,511
effective HSP length: 39
effective length of query: 24
effective length of database: 697,518,576
effective search space: 16740445824
effective search space used: 16740445824
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 77 (34.3 bits)
BLASTP 2.2.1 [Jul-12-2001]