Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DDB0186473
(232 letters)
Database: /home/dicty1/resource/WorkingDBs//nr-clean
2,329,665 sequences; 788,375,511 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|50939475|ref|XP_479265.1| vesicle soluble NSF attachment prot... 50 6e-05
gi|53829389|gb|AAU94637.1| SNARE 13 [Oryza sativa (japonica cult... 50 6e-05
gi|49646284|emb|CAG82636.1| unnamed protein product [Yarrowia li... 47 3e-04
gi|34896946|ref|NP_909819.1| putative vesicle soluble NSF attach... 44 0.004
gi|53829387|gb|AAU94636.1| SNARE 12 [Oryza sativa (japonica cult... 42 0.013
gi|19569611|gb|AAL92119.1| NPSN12 [Arabidopsis thaliana] >gi|264... 42 0.017
gi|50748320|ref|XP_421192.1| PREDICTED: similar to vesicle trans... 42 0.017
gi|8778964|gb|AAD49774.2| F11A17.20 [Arabidopsis thaliana] >gi|2... 42 0.017
gi|33861354|ref|NP_892915.1| possible mRNA binding protein [Proc... 41 0.028
gi|54695564|gb|AAV38154.1| vesicle transport through interaction... 40 0.037
gi|31980617|ref|NP_058080.2| vesicle transport through interacti... 40 0.048
gi|4104432|gb|AAD02039.1| GES30 [Mus musculus] 40 0.048
gi|3213229|gb|AAC23483.1| putative v-SNARE Vti1b [Mus musculus] ... 40 0.048
gi|57087179|ref|XP_536801.1| PREDICTED: similar to polyamine mod... 39 0.082
gi|20197215|gb|AAC61818.2| expressed protein [Arabidopsis thalia... 39 0.082
gi|53829383|gb|AAU94635.1| SNARE 11 [Oryza sativa (japonica cult... 39 0.11
gi|46228042|gb|EAK88941.1| possible t-snare domain, possible tra... 39 0.11
gi|54695566|gb|AAV38155.1| vesicle transport through interaction... 39 0.14
gi|57090235|ref|XP_537489.1| PREDICTED: similar to Vesicle trans... 39 0.14
gi|55640939|ref|XP_510021.1| PREDICTED: similar to vesicle trans... 39 0.14
gi|54696782|gb|AAV38763.1| vesicle transport through interaction... 39 0.14
gi|54695562|gb|AAV38153.1| vesicle transport through interaction... 39 0.14
gi|23505837|gb|AAN28778.1| At2g35190/T4C15.14 [Arabidopsis thali... 39 0.14
gi|47523922|ref|NP_999602.1| NFS protein [Sus scrofa] >gi|408464... 39 0.14
gi|2687400|gb|AAC52016.1| vesicle soluble NSF attachment protein... 39 0.14
gi|5679735|emb|CAB51811.1| kinesin-II homologue [Tetrahymena the... 39 0.14
gi|55244856|gb|EAL41600.1| ENSANGP00000026215 [Anopheles gambiae... 38 0.18
gi|54657527|gb|EAL36287.1| hypothetical protein Chro.30485 [Cryp... 38 0.18
gi|54638329|gb|EAL27731.1| GA21816-PA [Drosophila pseudoobscura] 38 0.24
gi|11994682|dbj|BAB02920.1| unnamed protein product [Arabidopsis... 38 0.24
gi|47209810|emb|CAG12315.1| unnamed protein product [Tetraodon n... 37 0.31
gi|57107939|ref|XP_544116.1| PREDICTED: similar to vesicle trans... 37 0.41
gi|41393141|ref|NP_958900.1| tropomyosin 3 [Danio rerio] >gi|278... 37 0.41
gi|47211244|emb|CAF95043.1| unnamed protein product [Tetraodon n... 37 0.41
gi|41146763|ref|XP_371718.1| PREDICTED: similar to vesicle trans... 37 0.53
gi|54696132|gb|AAV38438.1| tropomyosin 2 (beta) [synthetic const... 37 0.53
gi|32766295|gb|AAH55131.1| Similar to vesicle transport through ... 37 0.53
gi|46095905|gb|EAK81138.1| hypothetical protein UM00766.1 [Ustil... 37 0.53
gi|825723|emb|CAA30930.1| tropomyosin (227 AA) [Homo sapiens] >g... 37 0.53
gi|49660014|gb|AAT68295.1| tropomyosin alpha striated muscle iso... 37 0.53
gi|49660012|gb|AAT68294.1| sarcomeric tropomyosin kappa; TPM1-ka... 37 0.53
gi|27127288|dbj|BAC44994.1| tropomyosin [Theragra chalcogramma] 37 0.53
gi|3822409|gb|AAC69874.1| synaptosome-associated protein SNAP-25... 37 0.53
gi|19353393|gb|AAH24358.1| Tpm2 protein [Mus musculus] >gi|58477... 36 0.70
gi|55859703|emb|CAI10974.1| tropomyosin 2 (beta) [Homo sapiens] ... 36 0.70
gi|9657567|gb|AAF96089.1| methyl-accepting chemotaxis protein [V... 36 0.70
gi|27359486|gb|AAO08430.1| Methyl-accepting chemotaxis protein [... 36 0.70
gi|57094103|ref|XP_538720.1| PREDICTED: similar to beta-tropomyo... 36 0.70
gi|37676040|ref|NP_936436.1| methyl-accepting chemotaxis protein... 36 0.70
gi|28557124|dbj|BAC57567.1| tropomyosin1-2 [Takifugu rubripes] 36 0.70
gi|28557121|dbj|BAC57566.1| tropomyosin1-2 [Takifugu rubripes] 36 0.70
gi|50190|emb|CAA41271.1| beta-tropomyosin [Mus musculus] >gi|111... 36 0.70
gi|6573280|gb|AAF17621.1| beta tropomyosin [Homo sapiens] 36 0.70
gi|22415765|dbj|BAC10577.1| skeletal muscle tropomyosin1-2 [Taki... 36 0.70
gi|17737875|ref|NP_524298.1| CG9474-PA [Drosophila melanogaster]... 36 0.91
gi|57108257|ref|XP_535506.1| PREDICTED: similar to tropomyosin 1... 36 0.91
gi|45382323|ref|NP_990732.1| tropomyosin (CTm4) [Gallus gallus] ... 36 0.91
gi|211109|gb|AAA48579.1| alpha-tropomyosin [Gallus gallus] 36 0.91
gi|16944601|emb|CAC18617.2| hypothetical protein [Neurospora cra... 36 0.91
gi|27263171|dbj|BAC45225.1| synaptosome-associated protein of 25... 36 0.91
>gi|50939475|ref|XP_479265.1| vesicle soluble NSF attachment protein
receptor-like protein [Oryza sativa (japonica
cultivar-group)]
dbj|BAC16405.1| vesicle soluble NSF attachment protein receptor-like protein [Oryza
sativa (japonica cultivar-group)]
Length = 266
Score = 49.7 bits (117), Expect = 6e-05
Identities = 44/204 (21%), Positives = 84/204 (40%), Gaps = 12/204 (5%)
Query: 3 DLQENEMDFEKIVREVEIGIKDLSKNKRGIEARGGAELLRNRIGRAKQILRSY----KLD 58
+L++ + + + I R ++ G + + K K E L ++ K++++ + K D
Sbjct: 10 ELEQVDGEIQDIFRALQNGFQKMDKIKDSNRQSKQLEDLTGKMRECKRLIKEFDRILKED 69
Query: 59 FRELAKNEQKPYQDKA-------NQYEEQIKTLENDL-NWAEKXXXXXXXXXXXXXXXXX 110
++ + + K DK N Y KT ++ L N +
Sbjct: 70 EKKNSADVNKQLNDKKQLMIKELNSYVTLRKTYQSSLGNKRIELFDTGNDQVAEDNTVQM 129
Query: 111 XIDTEYQETMXXXXXXXXXXXXTTHRILSEVGQINEVGTSTLEEMAVQEEQMKRIQKDME 170
+ Q+ M R V Q EVG+ T ++ Q EQMKRI +++
Sbjct: 130 ASEMSNQQLMDAGRKQMDQTDQVIERSKKVVAQTVEVGSQTAAALSQQTEQMKRIGNELD 189
Query: 171 EIDGNLKLATRQMRAFARKMATDK 194
+ +LK A++ ++ R++ATDK
Sbjct: 190 SVHFSLKKASQMVKEIGRQVATDK 213
>gi|53829389|gb|AAU94637.1| SNARE 13 [Oryza sativa (japonica
cultivar-group)]
Length = 266
Score = 49.7 bits (117), Expect = 6e-05
Identities = 44/204 (21%), Positives = 84/204 (40%), Gaps = 12/204 (5%)
Query: 3 DLQENEMDFEKIVREVEIGIKDLSKNKRGIEARGGAELLRNRIGRAKQILRSY----KLD 58
+L++ + + + I R ++ G + + K K E L ++ K++++ + K D
Sbjct: 10 ELEQVDGEIQDIFRALQNGFQKMDKIKDSNRQSKQLEDLTGKMRECKRLIKEFDRILKED 69
Query: 59 FRELAKNEQKPYQDKA-------NQYEEQIKTLENDL-NWAEKXXXXXXXXXXXXXXXXX 110
++ + + K DK N Y KT ++ L N +
Sbjct: 70 EKKNSADVNKQLNDKKQLMIKELNSYVTLRKTYQSSLGNKRIELFDTGNDQVAEDNTVQM 129
Query: 111 XIDTEYQETMXXXXXXXXXXXXTTHRILSEVGQINEVGTSTLEEMAVQEEQMKRIQKDME 170
+ Q+ M R V Q EVG+ T ++ Q EQMKRI +++
Sbjct: 130 ASEMSNQQLMDAGRKQMDQTDQVIERSKKVVAQTVEVGSQTAAALSQQTEQMKRIGNELD 189
Query: 171 EIDGNLKLATRQMRAFARKMATDK 194
+ +LK A++ ++ R++ATDK
Sbjct: 190 SVHFSLKKASQMVKEIGRQVATDK 213
>gi|49646284|emb|CAG82636.1| unnamed protein product [Yarrowia
lipolytica CLIB99]
ref|XP_500418.1| hypothetical protein [Yarrowia lipolytica]
Length = 219
Score = 47.4 bits (111), Expect = 3e-04
Identities = 36/188 (19%), Positives = 75/188 (39%), Gaps = 3/188 (1%)
Query: 8 EMDFEKIVREVEIGIKDLSKNKRGIEARGGA-ELLRNRIGRAKQILRSYKLDFRELAKNE 66
E DF E+E ++ +S +R +AR A + + IG A +IL ++ + + +
Sbjct: 11 ETDFLLAQSEIEQKLESISTLER--DARTSAVKAVERTIGEAYEILDQLSVEIQNIPSSA 68
Query: 67 QKPYQDKANQYEEQIKTLENDLNWAEKXXXXXXXXXXXXXXXXXXIDTEYQETMXXXXXX 126
+ P QY + I++ + L E+ I + ++ +
Sbjct: 69 RAPLSANLRQYRQSIQSAKKQLANVEQAGARNELFGDRSAAGDGDIALDQRQQLLSGQES 128
Query: 127 XXXXXXTTHRILSEVGQINEVGTSTLEEMAVQEEQMKRIQKDMEEIDGNLKLATRQMRAF 186
+ +G + L ++ Q EQ++ + + E DG + + R +R+
Sbjct: 129 LDRSSQRIRDSQRVANETESIGANILTDLRGQREQIQNSRNTLLEADGYVDKSIRTLRSM 188
Query: 187 ARKMATDK 194
R+MA +K
Sbjct: 189 TRRMAMNK 196
>gi|34896946|ref|NP_909819.1| putative vesicle soluble NSF
attachment protein receptor [Oryza sativa]
gb|AAG46143.1| putative vesicle soluble NSF attachment protein receptor [Oryza
sativa]
Length = 275
Score = 43.5 bits (101), Expect = 0.004
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 141 VGQINEVGTSTLEEMAVQEEQMKRIQKDMEEIDGNLKLATRQMRAFARKMATDK 194
V Q E GT T ++ Q EQMKRI +++ + +LK A++ ++ R++ATDK
Sbjct: 164 VAQTIETGTQTASALSQQTEQMKRIGNELDTVHFSLKKASQLVKEIGRQVATDK 217
>gi|53829387|gb|AAU94636.1| SNARE 12 [Oryza sativa (japonica
cultivar-group)]
Length = 275
Score = 42.0 bits (97), Expect = 0.013
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 141 VGQINEVGTSTLEEMAVQEEQMKRIQKDMEEIDGNLKLATRQMRAFARKMATDK 194
V Q E GT T ++ Q E+MKRI +++ + +LK A++ ++ R++ATDK
Sbjct: 164 VAQTIETGTQTASALSQQTERMKRIGNELDTVHFSLKKASQLVKEIGRQVATDK 217
>gi|19569611|gb|AAL92119.1| NPSN12 [Arabidopsis thaliana]
dbj|BAC41993.1| unknown protein [Arabidopsis thaliana]
gb|AAO63335.1| At1g48240 [Arabidopsis thaliana]
gb|AAF79516.1| F21D18.4 [Arabidopsis thaliana]
ref|NP_175258.2| novel plant SNARE 12 (NPSN12) [Arabidopsis thaliana]
sp|Q9LNH6|NS12_ARATH Novel plant SNARE 12 (AtNPSN12)
Length = 265
Score = 41.6 bits (96), Expect = 0.017
Identities = 21/54 (38%), Positives = 33/54 (60%)
Query: 141 VGQINEVGTSTLEEMAVQEEQMKRIQKDMEEIDGNLKLATRQMRAFARKMATDK 194
V Q EVGT T + Q +QM R+ D++ I +LK A++ ++ R++ATDK
Sbjct: 163 VHQTLEVGTQTASNLKGQTDQMGRVVNDLDTIQFSLKKASQLVKEIGRQVATDK 216
>gi|50748320|ref|XP_421192.1| PREDICTED: similar to vesicle
transport through interaction with t-SNAREs 1B;
vesicle-associated soluble NSF attachment protein
receptor; v-SNARE [Gallus gallus]
Length = 232
Score = 41.6 bits (96), Expect = 0.017
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 134 THRILSEVGQINEVGTSTLEEMAVQEEQMKRIQKDMEEIDGNLKLATRQMRAFARKMATD 193
+HRI +E QI GT +EE+ Q EQ++R + + NL + + +R+ +R++AT+
Sbjct: 149 SHRIAAETDQI---GTDIIEELGEQREQLERTKSRLVNTSENLSKSRKILRSMSRRIATN 205
Query: 194 K 194
K
Sbjct: 206 K 206
>gi|8778964|gb|AAD49774.2| F11A17.20 [Arabidopsis thaliana]
pir||C96522 F11A17.20 [imported] - Arabidopsis thaliana
Length = 285
Score = 41.6 bits (96), Expect = 0.017
Identities = 21/54 (38%), Positives = 33/54 (60%)
Query: 141 VGQINEVGTSTLEEMAVQEEQMKRIQKDMEEIDGNLKLATRQMRAFARKMATDK 194
V Q EVGT T + Q +QM R+ D++ I +LK A++ ++ R++ATDK
Sbjct: 183 VHQTLEVGTQTASNLKGQTDQMGRVVNDLDTIQFSLKKASQLVKEIGRQVATDK 236
>gi|33861354|ref|NP_892915.1| possible mRNA binding protein
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
emb|CAE19256.1| possible mRNA binding protein [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 306
Score = 40.8 bits (94), Expect = 0.028
Identities = 25/93 (26%), Positives = 41/93 (43%), Gaps = 5/93 (5%)
Query: 1 MADLQENEMDFEKIVREVEIGIKDLSKNKRGIEARGGAELLRNRIGRAKQILRSYKLDFR 60
++D+ +DFEK + +RG+ +G L G K + K DF
Sbjct: 185 LSDVMIKCLDFEKSKNSIYN-----CSGERGVTIKGLIYLCAEVCGLNKTDIYLNKFDFE 239
Query: 61 ELAKNEQKPYQDKANQYEEQIKTLENDLNWAEK 93
+L +K + + N Y+ I ++NDLNW K
Sbjct: 240 KLDPKSRKGFPIRLNHYQTDISKIKNDLNWKPK 272
>gi|54695564|gb|AAV38154.1| vesicle transport through interaction
with t-SNAREs homolog 1B (yeast) [synthetic construct]
Length = 233
Score = 40.4 bits (93), Expect = 0.037
Identities = 20/61 (32%), Positives = 36/61 (58%), Gaps = 3/61 (4%)
Query: 134 THRILSEVGQINEVGTSTLEEMAVQEEQMKRIQKDMEEIDGNLKLATRQMRAFARKMATD 193
+HRI +E QI G+ +EE+ Q +Q++R + + NL + + +R+ +RK+ TD
Sbjct: 149 SHRIATETDQI---GSEIIEELGEQRDQLERTKSRLVNTSENLSKSRKILRSMSRKVTTD 205
Query: 194 K 194
K
Sbjct: 206 K 206
>gi|31980617|ref|NP_058080.2| vesicle transport through interaction
with t-SNAREs 1B homolog [Mus musculus]
gb|AAH80204.1| Vti1b protein [Mus musculus]
gb|AAH09810.1| Vti1b protein [Mus musculus]
Length = 232
Score = 40.0 bits (92), Expect = 0.048
Identities = 20/61 (32%), Positives = 37/61 (59%), Gaps = 3/61 (4%)
Query: 134 THRILSEVGQINEVGTSTLEEMAVQEEQMKRIQKDMEEIDGNLKLATRQMRAFARKMATD 193
+HRI +E QI GT +EE+ Q +Q++R + + + NL + + +R+ +RK+ T+
Sbjct: 149 SHRIATETDQI---GTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSRKVITN 205
Query: 194 K 194
K
Sbjct: 206 K 206
>gi|4104432|gb|AAD02039.1| GES30 [Mus musculus]
Length = 231
Score = 40.0 bits (92), Expect = 0.048
Identities = 20/61 (32%), Positives = 37/61 (59%), Gaps = 3/61 (4%)
Query: 134 THRILSEVGQINEVGTSTLEEMAVQEEQMKRIQKDMEEIDGNLKLATRQMRAFARKMATD 193
+HRI +E QI GT +EE+ Q +Q++R + + + NL + + +R+ +RK+ T+
Sbjct: 148 SHRIATETDQI---GTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSRKVITN 204
Query: 194 K 194
K
Sbjct: 205 K 205
>gi|3213229|gb|AAC23483.1| putative v-SNARE Vti1b [Mus musculus]
sp|O88384|VT1B_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1B
(Vesicle transport v-SNARE protein Vti1-like 1)
(Vti1-rp1)
Length = 232
Score = 40.0 bits (92), Expect = 0.048
Identities = 20/61 (32%), Positives = 37/61 (59%), Gaps = 3/61 (4%)
Query: 134 THRILSEVGQINEVGTSTLEEMAVQEEQMKRIQKDMEEIDGNLKLATRQMRAFARKMATD 193
+HRI +E QI GT +EE+ Q +Q++R + + + NL + + +R+ +RK+ T+
Sbjct: 149 SHRIATETDQI---GTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSRKVITN 205
Query: 194 K 194
K
Sbjct: 206 K 206
>gi|57087179|ref|XP_536801.1| PREDICTED: similar to polyamine
modulated factor 1 binding protein 1 [Canis familiaris]
Length = 1346
Score = 39.3 bits (90), Expect = 0.082
Identities = 41/194 (21%), Positives = 75/194 (38%), Gaps = 19/194 (9%)
Query: 4 LQENEMDFEKIVR---EVEIGIKDLSKNKRGIEARGGAELLRNRIGRAKQILRSYKLDFR 60
L + EM+ EK R E+EI I++L ++K +R LR I + K L
Sbjct: 744 LMKKEMELEKQQRMTTELEITIQELKQDK----SRAECGTLRAEIQKLKDSL-------- 791
Query: 61 ELAKNEQKPYQDKANQYEEQIKTLENDLNWAEKXXXXXXXXXXXXXXXXXXIDTEYQETM 120
E + +QK +A QY+E+I +N+L A++ + E Q+
Sbjct: 792 EETQQQQKLAAQQAAQYKEEILLAKNNLEDAQRKLQSYTFLEKQKTETIQELQRELQKLQ 851
Query: 121 XXXXXXXXXXXXTTHRILSEVGQINEVGTSTLEEMAVQEEQMKRIQKDMEEIDGNLKLAT 180
RI +++E ++ + E++ ++ QK E D L
Sbjct: 852 KDSLIAGEELAPNRKRIEELTSELSE----ARRKLEISEKEKRQFQKTTAEQDMKLNELL 907
Query: 181 RQMRAFARKMATDK 194
++ ++ K
Sbjct: 908 EHLKILQHQLKKSK 921
>gi|20197215|gb|AAC61818.2| expressed protein [Arabidopsis thaliana]
ref|NP_565800.1| novel plant SNARE 11 (NPSN11) [Arabidopsis thaliana]
Length = 265
Score = 39.3 bits (90), Expect = 0.082
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 147 VGTSTLEEMAVQEEQMKRIQKDMEEIDGNLKLATRQMRAFARKMATDK 194
VGT T + Q EQM R+ +++ I +LK A++ ++ R++ATDK
Sbjct: 167 VGTDTSAALKAQTEQMSRVVNELDSIHFSLKKASKLVKEIGRQVATDK 214
>gi|53829383|gb|AAU94635.1| SNARE 11 [Oryza sativa (japonica
cultivar-group)]
dbj|BAD53572.1| putative NPSN12 [Oryza sativa (japonica cultivar-group)]
Length = 261
Score = 38.9 bits (89), Expect = 0.11
Identities = 20/78 (25%), Positives = 37/78 (46%)
Query: 147 VGTSTLEEMAVQEEQMKRIQKDMEEIDGNLKLATRQMRAFARKMATDKXXXXXXXXXXXX 206
VGT T + Q EQM RI +++ I ++K A++ ++ R++ATD+
Sbjct: 164 VGTETAAALKSQTEQMSRIVNELDSIHFSIKKASQMVKEIGRQVATDRCIMALLFLIVAG 223
Query: 207 XXXXXXXXXXKPKSKTVQ 224
P++KT++
Sbjct: 224 VIAIIVVKIVNPQNKTIR 241
>gi|46228042|gb|EAK88941.1| possible t-snare domain, possible
transmembrane domain or GPI anchor signal at C-terminus
[Cryptosporidium parvum]
Length = 222
Score = 38.9 bits (89), Expect = 0.11
Identities = 41/180 (22%), Positives = 76/180 (41%), Gaps = 36/180 (20%)
Query: 15 VREVEIGIKDLSKNKRGIEARGGAELLRNRIGRAKQILRSYKLDFRELAKNEQKPYQDKA 74
+ ++I +K L K E + E L +R R + I S+ + L EQ Y K
Sbjct: 45 LESIQIELKSL---KEPSEKKKFEEFLNSRSDRIRNINESWTKN--ALIPTEQVTYNTKR 99
Query: 75 NQYEEQIKTL-ENDLNWAEKXXXXXXXXXXXXXXXXXXIDTEYQETMXXXXXXXXXXXXT 133
N + E I++L ++DL T+Y++ +
Sbjct: 100 N-FNEDIQSLNDSDL-------------------------TDYKK----GDALIKLTDES 129
Query: 134 THRILSEVGQINEVGTSTLEEMAVQEEQMKRIQKDMEEIDGNLKLATRQMRAFARKMATD 193
R+ + +++G +L +M Q+EQ+ RI+ +++ + N+ A ++A AR ATD
Sbjct: 130 IIRMKQSLTYTDKLGDDSLNKMNTQKEQLDRIRNELDNVKDNIYKANISLKAIARNTATD 189
>gi|54695566|gb|AAV38155.1| vesicle transport through interaction
with t-SNAREs homolog 1B (yeast) [Homo sapiens]
ref|NP_006361.1| vesicle transport through interaction with t-SNAREs 1B [Homo
sapiens]
gb|AAH03142.1| Vesicle transport through interaction with t-SNAREs 1B [Homo
sapiens]
gb|AAC73059.1| vesicle soluble NSF attachment protein receptor VTI2 [Homo sapiens]
emb|CAG46892.1| VTI1B [Homo sapiens]
emb|CAG33038.1| VTI1B [Homo sapiens]
Length = 232
Score = 38.5 bits (88), Expect = 0.14
Identities = 19/61 (31%), Positives = 36/61 (58%), Gaps = 3/61 (4%)
Query: 134 THRILSEVGQINEVGTSTLEEMAVQEEQMKRIQKDMEEIDGNLKLATRQMRAFARKMATD 193
+HRI +E QI G+ +EE+ Q +Q++R + + NL + + +R+ +RK+ T+
Sbjct: 149 SHRIATETDQI---GSEIIEELGEQRDQLERTKSRLVNTSENLSKSRKILRSMSRKVTTN 205
Query: 194 K 194
K
Sbjct: 206 K 206
>gi|57090235|ref|XP_537489.1| PREDICTED: similar to Vesicle
transport through interaction with t-SNAREs homolog 1B
(Vesicle transport v-SNARE protein Vti1-like 1)
(Vti1-rp1) [Canis familiaris]
Length = 504
Score = 38.5 bits (88), Expect = 0.14
Identities = 19/61 (31%), Positives = 36/61 (58%), Gaps = 3/61 (4%)
Query: 134 THRILSEVGQINEVGTSTLEEMAVQEEQMKRIQKDMEEIDGNLKLATRQMRAFARKMATD 193
+HRI +E QI G+ +EE+ Q +Q++R + + NL + + +R+ +RK+ T+
Sbjct: 421 SHRIATETDQI---GSEIIEELGEQRDQLERTKSRLVNTSENLSKSRKILRSMSRKVTTN 477
Query: 194 K 194
K
Sbjct: 478 K 478
>gi|55640939|ref|XP_510021.1| PREDICTED: similar to vesicle
transport through interaction with t-SNAREs 1B;
vesicle-associated soluble NSF attachment protein
receptor; v-SNARE [Pan troglodytes]
Length = 401
Score = 38.5 bits (88), Expect = 0.14
Identities = 19/61 (31%), Positives = 36/61 (58%), Gaps = 3/61 (4%)
Query: 134 THRILSEVGQINEVGTSTLEEMAVQEEQMKRIQKDMEEIDGNLKLATRQMRAFARKMATD 193
+HRI +E QI G+ +EE+ Q +Q++R + + NL + + +R+ +RK+ T+
Sbjct: 318 SHRIATETDQI---GSEIIEELGEQRDQLERTKSRLVNTSENLSKSRKILRSMSRKVTTN 374
Query: 194 K 194
K
Sbjct: 375 K 375
>gi|54696782|gb|AAV38763.1| vesicle transport through interaction
with t-SNAREs homolog 1B (yeast) [Homo sapiens]
Length = 232
Score = 38.5 bits (88), Expect = 0.14
Identities = 19/61 (31%), Positives = 36/61 (58%), Gaps = 3/61 (4%)
Query: 134 THRILSEVGQINEVGTSTLEEMAVQEEQMKRIQKDMEEIDGNLKLATRQMRAFARKMATD 193
+HRI +E QI G+ +EE+ Q +Q++R + + NL + + +R+ +RK+ T+
Sbjct: 149 SHRIATETDQI---GSEIIEELGEQRDQLERTKSRLVNTSENLSKSRKILRSMSRKVTTN 205
Query: 194 K 194
K
Sbjct: 206 K 206
>gi|54695562|gb|AAV38153.1| vesicle transport through interaction
with t-SNAREs homolog 1B (yeast) [synthetic construct]
Length = 233
Score = 38.5 bits (88), Expect = 0.14
Identities = 19/61 (31%), Positives = 36/61 (58%), Gaps = 3/61 (4%)
Query: 134 THRILSEVGQINEVGTSTLEEMAVQEEQMKRIQKDMEEIDGNLKLATRQMRAFARKMATD 193
+HRI +E QI G+ +EE+ Q +Q++R + + NL + + +R+ +RK+ T+
Sbjct: 149 SHRIATETDQI---GSEIIEELGEQRDQLERTKSRLVNTSENLSKSRKILRSMSRKVTTN 205
Query: 194 K 194
K
Sbjct: 206 K 206
>gi|23505837|gb|AAN28778.1| At2g35190/T4C15.14 [Arabidopsis
thaliana]
gb|AAL27494.1| At2g35190/T4C15.14 [Arabidopsis thaliana]
sp|Q944A9|NS11_ARATH Novel plant SNARE 11 (AtNPSN11)
Length = 265
Score = 38.5 bits (88), Expect = 0.14
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 147 VGTSTLEEMAVQEEQMKRIQKDMEEIDGNLKLATRQMRAFARKMATDK 194
VGT T + Q EQM R+ +++ I +LK A++ ++ R++ATDK
Sbjct: 167 VGTDTSAALKPQTEQMSRVVNELDSIHFSLKKASKLVKEIGRQVATDK 214
>gi|47523922|ref|NP_999602.1| NFS protein [Sus scrofa]
gb|AAR92482.1| NFS [Sus scrofa]
gb|AAR92459.1| vesicle transport through interaction with t-SNAREs protein [Sus
scrofa]
Length = 232
Score = 38.5 bits (88), Expect = 0.14
Identities = 19/61 (31%), Positives = 36/61 (58%), Gaps = 3/61 (4%)
Query: 134 THRILSEVGQINEVGTSTLEEMAVQEEQMKRIQKDMEEIDGNLKLATRQMRAFARKMATD 193
+HRI +E QI G+ +EE+ Q +Q++R + + NL + + +R+ +RK+ T+
Sbjct: 149 SHRIAAETDQI---GSEIIEELGEQRDQLERTKSRLVNTSENLSKSRKILRSMSRKVTTN 205
Query: 194 K 194
K
Sbjct: 206 K 206
>gi|2687400|gb|AAC52016.1| vesicle soluble NSF attachment protein
receptor [Homo sapiens]
sp|Q9UEU0|VT1B_HUMAN Vesicle transport through interaction with t-SNAREs homolog 1B
(Vesicle transport v-SNARE protein Vti1-like 1)
(Vti1-rp1)
Length = 232
Score = 38.5 bits (88), Expect = 0.14
Identities = 19/61 (31%), Positives = 36/61 (58%), Gaps = 3/61 (4%)
Query: 134 THRILSEVGQINEVGTSTLEEMAVQEEQMKRIQKDMEEIDGNLKLATRQMRAFARKMATD 193
+HRI +E QI G+ +EE+ Q +Q++R + + NL + + +R+ +RK+ T+
Sbjct: 149 SHRIATETDQI---GSEIIEELGEQRDQLERTKSRLVNTSENLSKSRKILRSMSRKVTTN 205
Query: 194 K 194
K
Sbjct: 206 K 206
>gi|5679735|emb|CAB51811.1| kinesin-II homologue [Tetrahymena
thermophila]
Length = 697
Score = 38.5 bits (88), Expect = 0.14
Identities = 26/92 (28%), Positives = 46/92 (49%), Gaps = 5/92 (5%)
Query: 5 QENEMDFEKIVREVEIGIKDLSKNKRGIEARGGAELLRNRIGRAKQILRSYKLDFRELAK 64
Q NE + ++R+ + I L + G+ GG + + + ++I+ +K D E+ K
Sbjct: 343 QINEDPKQAMIRKFQEEISSLKQQLSGLLETGGDFNMNAEVKKIEKIV--FKYDDEEIIK 400
Query: 65 NEQKPYQDKA---NQYEEQIKTLENDLNWAEK 93
+QK Q K+ N YE ++K +E D EK
Sbjct: 401 LKQKLEQQKSDIENNYENEVKKIEEDKQLQEK 432
>gi|55244856|gb|EAL41600.1| ENSANGP00000026215 [Anopheles gambiae
str. PEST]
Length = 297
Score = 38.1 bits (87), Expect = 0.18
Identities = 15/60 (25%), Positives = 37/60 (61%)
Query: 133 TTHRILSEVGQINEVGTSTLEEMAVQEEQMKRIQKDMEEIDGNLKLATRQMRAFARKMAT 192
T+ R L + + +VG +T EE+ Q EQ+++ +K ++EI+ +L+ + + + + +++
Sbjct: 160 TSQRCLGVLRETEQVGIATAEELHRQREQLEKTKKQLDEINNSLRFSQKHLNSLKSNISS 219
>gi|54657527|gb|EAL36287.1| hypothetical protein Chro.30485
[Cryptosporidium hominis]
Length = 222
Score = 38.1 bits (87), Expect = 0.18
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 136 RILSEVGQINEVGTSTLEEMAVQEEQMKRIQKDMEEIDGNLKLATRQMRAFARKMATD 193
R+ + ++G +L +M Q+EQ+ RI+ +++ + N+ A ++A AR ATD
Sbjct: 132 RMKKSLTYTEKLGDDSLNKMNTQKEQLDRIRNELDNVKDNIYKANISLKAIARNTATD 189
>gi|54638329|gb|EAL27731.1| GA21816-PA [Drosophila pseudoobscura]
Length = 211
Score = 37.7 bits (86), Expect = 0.24
Identities = 20/70 (28%), Positives = 35/70 (49%)
Query: 114 TEYQETMXXXXXXXXXXXXTTHRILSEVGQINEVGTSTLEEMAVQEEQMKRIQKDMEEID 173
TE QE +T R+LS + + E G TL + Q EQ+ RI++ M+ I+
Sbjct: 10 TELQELQLKSATVADESLESTRRMLSLMDESKEAGIRTLVALDDQGEQLDRIEEGMDRIN 69
Query: 174 GNLKLATRQM 183
+++ A + +
Sbjct: 70 ADMREAEKNL 79
>gi|11994682|dbj|BAB02920.1| unnamed protein product [Arabidopsis
thaliana]
gb|AAM20473.1| unknown protein [Arabidopsis thaliana]
ref|NP_566578.1| novel plant SNARE 13 (NPSN13) [Arabidopsis thaliana]
gb|AAN65136.1| unknown protein [Arabidopsis thaliana]
sp|Q9LRP1|NS13_ARATH Novel plant SNARE 13 (AtNPSN13)
Length = 269
Score = 37.7 bits (86), Expect = 0.24
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 141 VGQINEVGTSTLEEMAVQEEQMKRIQKDMEEIDGNLKLATRQMRAFARKMATDK 194
V Q EVGT T + Q +QM R+ ++ I ++K A++ ++ R++ATDK
Sbjct: 163 VEQTLEVGTQTAANLKGQTDQMGRVVNHLDTIQFSIKKASQLVKEIGRQVATDK 216
>gi|47209810|emb|CAG12315.1| unnamed protein product [Tetraodon
nigroviridis]
Length = 224
Score = 37.4 bits (85), Expect = 0.31
Identities = 27/176 (15%), Positives = 63/176 (35%), Gaps = 5/176 (2%)
Query: 24 DLSKNKRGIEARGGAELLRNRIGRAKQILRSYKLDFRELAKNEQKPYQDKANQYEEQIKT 83
D ++ G E + R G A+++L+ + + + + K Y +
Sbjct: 25 DRAQRSYGEERKRLVRTFDERQGEAEEVLQGMEKELLAAPLSYRNTMNTKLRMYRRDLAK 84
Query: 84 LENDLN-----WAEKXXXXXXXXXXXXXXXXXXIDTEYQETMXXXXXXXXXXXXTTHRIL 138
++ D+ A++ I + + + R
Sbjct: 85 VQRDMKSSNSGLAKRTAEEGTRAGRQHKTSKGHISRSQRALLLQGTEARNNASQSIERSQ 144
Query: 139 SEVGQINEVGTSTLEEMAVQEEQMKRIQKDMEEIDGNLKLATRQMRAFARKMATDK 194
+ ++GT +EE+ Q EQ+ R + + NL + + +R+ +R++ T+K
Sbjct: 145 RIANETEQIGTDIIEELGEQREQLDRTRGRLVNTGENLSRSRKILRSISRRLVTNK 200
>gi|57107939|ref|XP_544116.1| PREDICTED: similar to vesicle
transport through interaction with t-SNAREs 1B [Canis
familiaris]
Length = 428
Score = 37.0 bits (84), Expect = 0.41
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 134 THRILSEVGQINEVGTSTLEEMAVQEEQMKRIQKDMEEIDGNLKLATRQMRAFARKMATD 193
+HRI +E QI G+ +EE+ Q +Q++R + + NL + + +R+ +RK+ T
Sbjct: 345 SHRIATETDQI---GSEIIEELGEQCDQLERTKSRLVNTSDNLSKSRKILRSMSRKVTTS 401
Query: 194 K 194
K
Sbjct: 402 K 402
>gi|41393141|ref|NP_958900.1| tropomyosin 3 [Danio rerio]
gb|AAH44420.1| Tropomyosin 3 [Danio rerio]
Length = 248
Score = 37.0 bits (84), Expect = 0.41
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 5 QENEMDFEKIVREVEIGIKDLSKNKRGIEARGGAELLRNRIGRAKQILRSYKLDFRELAK 64
+E + +E++ R++ I +L + + AEL + + + ++ LR+ + L
Sbjct: 120 EEADRKYEEVARKLVIVEGELERTEER------AELAESHVKQMEEELRALDQTLKTLQA 173
Query: 65 NEQKPYQDKANQYEEQIKTLENDLNWAE 92
+E+K Y K ++YEE+IK L + L AE
Sbjct: 174 SEEK-YSQKEDKYEEEIKILTDKLKEAE 200
>gi|47211244|emb|CAF95043.1| unnamed protein product [Tetraodon
nigroviridis]
Length = 248
Score = 37.0 bits (84), Expect = 0.41
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 15/93 (16%)
Query: 4 LQENEMDFEKIVREVEIGIKDLSKNKRGIEARGGAELLRNRIGRAKQILRSYKLDFRELA 63
L+ + D EK R+ L K E + G +++ NR + ++ KL+F E
Sbjct: 63 LERTQQDLEKACRQ------QLEFEKVADERQRGMKVIENRAQKDEE-----KLEFLEAQ 111
Query: 64 KNEQKPYQDKAN-QYEE---QIKTLENDLNWAE 92
NE K D+A+ +YEE ++K LE+DL AE
Sbjct: 112 LNEAKGIADEADRKYEESARRVKCLEDDLERAE 144
>gi|41146763|ref|XP_371718.1| PREDICTED: similar to vesicle
transport through interaction with t-SNAREs 1B;
vesicle-associated soluble NSF attachment protein
receptor; v-SNARE [Homo sapiens]
Length = 231
Score = 36.6 bits (83), Expect = 0.53
Identities = 18/61 (29%), Positives = 36/61 (58%), Gaps = 3/61 (4%)
Query: 134 THRILSEVGQINEVGTSTLEEMAVQEEQMKRIQKDMEEIDGNLKLATRQMRAFARKMATD 193
+H+I +E QI G+ T+EE+ Q + ++R + + NL + + +R+ +RK+ T+
Sbjct: 148 SHQIATETDQI---GSETIEELGEQRDHLERTKSRLINTTENLSKSRKILRSMSRKVTTN 204
Query: 194 K 194
K
Sbjct: 205 K 205
>gi|54696132|gb|AAV38438.1| tropomyosin 2 (beta) [synthetic
construct]
Length = 285
Score = 36.6 bits (83), Expect = 0.53
Identities = 23/88 (26%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
Query: 5 QENEMDFEKIVREVEIGIKDLSKNKRGIEARGGAELLRNRIGRAKQILRSYKLDFRELAK 64
++++ +E++ R++ I +L +++ AE+ +R + ++ LR+ + L
Sbjct: 156 EDSDRKYEEVARKLVILEGELERSEER------AEVAESRARQLEEELRTMDQALKSLMA 209
Query: 65 NEQKPYQDKANQYEEQIKTLENDLNWAE 92
+E++ Y K ++YEE+IK LE+ L AE
Sbjct: 210 SEEE-YSTKEDKYEEEIKLLEDKLKEAE 236
>gi|32766295|gb|AAH55131.1| Similar to vesicle transport through
interaction with t-SNAREs 1B homolog [Danio rerio]
ref|NP_957330.1| vesicle transport through interaction with t-SNAREs homolog 1B
[Danio rerio]
Length = 225
Score = 36.6 bits (83), Expect = 0.53
Identities = 20/61 (32%), Positives = 34/61 (54%), Gaps = 3/61 (4%)
Query: 134 THRILSEVGQINEVGTSTLEEMAVQEEQMKRIQKDMEEIDGNLKLATRQMRAFARKMATD 193
+ RI +E QI GT +EE+ Q EQ+ R + + NL + + +RA +R++ T+
Sbjct: 143 SQRIAAETDQI---GTDIIEELGEQREQLDRTRDRLVNTGENLSRSRKILRAMSRRIVTN 199
Query: 194 K 194
K
Sbjct: 200 K 200
>gi|46095905|gb|EAK81138.1| hypothetical protein UM00766.1 [Ustilago
maydis 521]
ref|XP_398381.1| hypothetical protein UM00766.1 [Ustilago maydis 521]
Length = 2328
Score = 36.6 bits (83), Expect = 0.53
Identities = 24/85 (28%), Positives = 40/85 (46%), Gaps = 1/85 (1%)
Query: 2 ADLQENEMDFEKIVREVEIGIKDLSKNKRGIEARGG-AELLRNRIGRAKQILRSYKLDFR 60
A +++ E + E V+E++ + L ++ ++AR G + LR + R KQ L S+
Sbjct: 1781 AKIRDGEAELETRVKELDSVREQLVSTEKDLKARSGELDSLRTEMERLKQALTSHDEKIE 1840
Query: 61 ELAKNEQKPYQDKANQYEEQIKTLE 85
L N +DKA E K E
Sbjct: 1841 SLHSNHASTLRDKARDLEALEKETE 1865
Score = 35.8 bits (81), Expect = 0.91
Identities = 36/199 (18%), Positives = 74/199 (37%), Gaps = 11/199 (5%)
Query: 3 DLQENEMDFEKIVREVEIGIKDLSK-------NKRGIEARGGAELLRNRIGRAKQILRSY 55
DL++ E ++++E+ + D SK +K+ EA +L+ + Q +RS
Sbjct: 303 DLRKTLSSRETTIQDLEMKLSDPSKANQIEALHKQLAEAAAKISILQADVREKDQSIRSS 362
Query: 56 KLDFRELAKNEQKPYQDKANQYEEQIKTLENDLNWAEKXXXXXXXXXXXXXXXXXXIDTE 115
D +L + + K + +A I LE L A + ++
Sbjct: 363 SADSEKLVQ-QVKELKQQAESSRSSITALEGKLAEATDREAKVNSSLKDMIAKNSTLASQ 421
Query: 116 YQETMXXXXXXXXXXXXTTHRI---LSEVGQINEVGTSTLEEMAVQEEQMKRIQKDMEEI 172
++E T ++ + + E S + E+Q+ +QK+ + +
Sbjct: 422 HEELEKKHAKTEADVQIWTKKVEQHTQSLAKSEEAAASVKDRANSAEKQLAAVQKESDLL 481
Query: 173 DGNLKLATRQMRAFARKMA 191
D +L +Q+ R A
Sbjct: 482 DSSLSDVKQQVETLTRDKA 500
>gi|825723|emb|CAA30930.1| tropomyosin (227 AA) [Homo sapiens]
pir||S05585 tropomyosin - human (fragment)
Length = 227
Score = 36.6 bits (83), Expect = 0.53
Identities = 25/88 (28%), Positives = 44/88 (49%), Gaps = 7/88 (7%)
Query: 5 QENEMDFEKIVREVEIGIKDLSKNKRGIEARGGAELLRNRIGRAKQILRSYKLDFRELAK 64
++ + +E++ R++ I DL + A AEL ++ + ++ LR D +
Sbjct: 99 EDADRKYEEVARKLVIIESDLER------AEERAELSEGQVRQLEEQLRIMDSDLESINA 152
Query: 65 NEQKPYQDKANQYEEQIKTLENDLNWAE 92
E K Y K ++YEE+IK L + L AE
Sbjct: 153 AEDK-YSQKEDRYEEEIKVLSDKLKEAE 179
>gi|49660014|gb|AAT68295.1| tropomyosin alpha striated muscle
isoform; TPM1-alpha [Homo sapiens]
Length = 284
Score = 36.6 bits (83), Expect = 0.53
Identities = 24/88 (27%), Positives = 44/88 (49%), Gaps = 7/88 (7%)
Query: 5 QENEMDFEKIVREVEIGIKDLSKNKRGIEARGGAELLRNRIGRAKQILRSYKLDFRELAK 64
++ + +E++ R++ I DL + A AEL + ++ L++ D + L
Sbjct: 156 EDADRKYEEVARKLVIIESDLER------AEERAELSEGKCAELEEELKTVTNDLKSLEA 209
Query: 65 NEQKPYQDKANQYEEQIKTLENDLNWAE 92
+K Y K ++YEE+IK L + L AE
Sbjct: 210 QAEK-YSQKEDRYEEEIKVLSDKLKEAE 236
>gi|49660012|gb|AAT68294.1| sarcomeric tropomyosin kappa; TPM1-kappa
[Homo sapiens]
Length = 284
Score = 36.6 bits (83), Expect = 0.53
Identities = 24/88 (27%), Positives = 44/88 (49%), Gaps = 7/88 (7%)
Query: 5 QENEMDFEKIVREVEIGIKDLSKNKRGIEARGGAELLRNRIGRAKQILRSYKLDFRELAK 64
++ + +E++ R++ I DL + A AEL + ++ L++ D + L
Sbjct: 156 EDADRKYEEVARKLVIIESDLER------AEERAELSEGKCAELEEELKTVTNDLKSLEA 209
Query: 65 NEQKPYQDKANQYEEQIKTLENDLNWAE 92
+K Y K ++YEE+IK L + L AE
Sbjct: 210 QAEK-YSQKEDRYEEEIKVLSDKLKEAE 236
>gi|27127288|dbj|BAC44994.1| tropomyosin [Theragra chalcogramma]
Length = 284
Score = 36.6 bits (83), Expect = 0.53
Identities = 24/88 (27%), Positives = 44/88 (49%), Gaps = 7/88 (7%)
Query: 5 QENEMDFEKIVREVEIGIKDLSKNKRGIEARGGAELLRNRIGRAKQILRSYKLDFRELAK 64
+E + +E++ R++ I DL + + AEL + K+ L++ + + L
Sbjct: 156 EEADRKYEEVARKLVIIESDLERTEER------AELSEGKCSELKEELKTVTNNLKSLEA 209
Query: 65 NEQKPYQDKANQYEEQIKTLENDLNWAE 92
+K Y K ++YEE+IK L + L AE
Sbjct: 210 QAEK-YSQKEDKYEEEIKVLTDKLKEAE 236
>gi|3822409|gb|AAC69874.1| synaptosome-associated protein SNAP-25-1;
SNAP-25 type 1 [Leucophaea maderae]
Length = 195
Score = 36.6 bits (83), Expect = 0.53
Identities = 19/70 (27%), Positives = 37/70 (52%)
Query: 114 TEYQETMXXXXXXXXXXXXTTHRILSEVGQINEVGTSTLEEMAVQEEQMKRIQKDMEEID 173
+E QE +T R+L+ + E G TL + Q EQ++RI+++M++I+
Sbjct: 16 SELQELQLKAGQVTDETLESTRRMLALCEESKEAGIRTLVALDDQGEQLERIEENMDQIN 75
Query: 174 GNLKLATRQM 183
++K A + +
Sbjct: 76 ADMKEAEKNL 85
>gi|19353393|gb|AAH24358.1| Tpm2 protein [Mus musculus]
gb|AAH90009.1| Unknown (protein for MGC:109519) [Rattus norvegicus]
pir||TMRTF1 tropomyosin 1, embryonic fibroblast - rat
gb|AAA42289.1| embryonic fibroblast tropomyosin 1
Length = 284
Score = 36.2 bits (82), Expect = 0.70
Identities = 23/88 (26%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 5 QENEMDFEKIVREVEIGIKDLSKNKRGIEARGGAELLRNRIGRAKQILRSYKLDFRELAK 64
++++ +E++ R++ I +L +++ AE+ +R + ++ LR+ + L
Sbjct: 156 EDSDRKYEEVARKLVILEGELERSEER------AEVAESRARQLEEELRTMDQALKSLIA 209
Query: 65 NEQKPYQDKANQYEEQIKTLENDLNWAE 92
+E++ Y K ++YEE+IK LE L AE
Sbjct: 210 SEEE-YSTKEDKYEEEIKLLEEKLKEAE 236
>gi|55859703|emb|CAI10974.1| tropomyosin 2 (beta) [Homo sapiens]
ref|NP_998839.1| tropomyosin 2 (beta) isoform 2 [Homo sapiens]
gb|AAH11776.1| TPM2 protein [Homo sapiens]
gb|AAB59509.1| tropomyosin
pir||A23562 tropomyosin 1, fibroblast and epithelial cell - human
gb|AAA61230.1| tropomyosin-1
gb|AAA36773.1| fibroblast tropomyosin
Length = 284
Score = 36.2 bits (82), Expect = 0.70
Identities = 23/88 (26%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 5 QENEMDFEKIVREVEIGIKDLSKNKRGIEARGGAELLRNRIGRAKQILRSYKLDFRELAK 64
++++ +E++ R++ I +L +++ AE+ +R + ++ LR+ + L
Sbjct: 156 EDSDRKYEEVARKLVILEGELERSEER------AEVAESRARQLEEELRTMDQALKSLMA 209
Query: 65 NEQKPYQDKANQYEEQIKTLENDLNWAE 92
+E++ Y K ++YEE+IK LE L AE
Sbjct: 210 SEEE-YSTKEDKYEEEIKLLEEKLKEAE 236
>gi|9657567|gb|AAF96089.1| methyl-accepting chemotaxis protein
[Vibrio cholerae O1 biovar eltor str. N16961]
ref|NP_232576.1| methyl-accepting chemotaxis protein [Vibrio cholerae O1 biovar
eltor str. N16961]
pir||G82490 methyl-accepting chemotaxis protein VCA0176 [imported] - Vibrio
cholerae (strain N16961 serogroup O1)
Length = 644
Score = 36.2 bits (82), Expect = 0.70
Identities = 16/46 (34%), Positives = 29/46 (62%)
Query: 133 TTHRILSEVGQINEVGTSTLEEMAVQEEQMKRIQKDMEEIDGNLKL 178
T ++ + E+ INEV TST EE+A + ++ + ++++ GN KL
Sbjct: 599 TINQNIEEINAINEVTTSTAEELADASKSLRELSGRLDKLVGNFKL 644
>gi|27359486|gb|AAO08430.1| Methyl-accepting chemotaxis protein
[Vibrio vulnificus CMCP6]
ref|NP_763440.1| Methyl-accepting chemotaxis protein [Vibrio vulnificus CMCP6]
Length = 637
Score = 36.2 bits (82), Expect = 0.70
Identities = 15/46 (32%), Positives = 30/46 (64%)
Query: 133 TTHRILSEVGQINEVGTSTLEEMAVQEEQMKRIQKDMEEIDGNLKL 178
T ++ + E+ INEV TST EE+A ++++ + + ++ + G+ KL
Sbjct: 592 TINQNIEEINAINEVTTSTAEELADASQELRELSRRLDSMVGSFKL 637
>gi|57094103|ref|XP_538720.1| PREDICTED: similar to beta-tropomyosin
[Canis familiaris]
Length = 310
Score = 36.2 bits (82), Expect = 0.70
Identities = 23/88 (26%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 5 QENEMDFEKIVREVEIGIKDLSKNKRGIEARGGAELLRNRIGRAKQILRSYKLDFRELAK 64
++++ +E++ R++ I +L +++ AE+ +R + ++ LR+ + L
Sbjct: 156 EDSDRKYEEVARKLVILEGELERSEER------AEVAESRARQLEEELRTMDQALKSLMA 209
Query: 65 NEQKPYQDKANQYEEQIKTLENDLNWAE 92
+E++ Y K ++YEE+IK LE L AE
Sbjct: 210 SEEE-YSTKEDKYEEEIKLLEEKLKEAE 236
>gi|37676040|ref|NP_936436.1| methyl-accepting chemotaxis protein
[Vibrio vulnificus YJ016]
dbj|BAC96406.1| methyl-accepting chemotaxis protein [Vibrio vulnificus YJ016]
Length = 645
Score = 36.2 bits (82), Expect = 0.70
Identities = 15/46 (32%), Positives = 30/46 (64%)
Query: 133 TTHRILSEVGQINEVGTSTLEEMAVQEEQMKRIQKDMEEIDGNLKL 178
T ++ + E+ INEV TST EE+A ++++ + + ++ + G+ KL
Sbjct: 600 TINQNIEEINAINEVTTSTAEELADASQELRELSRRLDSMVGSFKL 645
>gi|28557124|dbj|BAC57567.1| tropomyosin1-2 [Takifugu rubripes]
Length = 257
Score = 36.2 bits (82), Expect = 0.70
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 5 QENEMDFEKIVREVEIGIKDLSKNKRGIEARGGAELLRNRIGRAKQILRSYKLDFRELAK 64
+E + +E++ R++ I DL + + AEL ++ ++ L++ + + + L
Sbjct: 120 EEADRKYEEVARKLVIIESDLERTEER------AELSESKCSELEEELKTVQNNLKSLEA 173
Query: 65 NEQKPYQDKANQYEEQIKTLENDLNWAE 92
+K Y K ++YEE+IK L + L AE
Sbjct: 174 QAEK-YSQKEDKYEEEIKVLTDKLKEAE 200
>gi|28557121|dbj|BAC57566.1| tropomyosin1-2 [Takifugu rubripes]
Length = 293
Score = 36.2 bits (82), Expect = 0.70
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 5 QENEMDFEKIVREVEIGIKDLSKNKRGIEARGGAELLRNRIGRAKQILRSYKLDFRELAK 64
+E + +E++ R++ I DL + + AEL ++ ++ L++ + + + L
Sbjct: 156 EEADRKYEEVARKLVIIESDLERTEER------AELSESKCSELEEELKTVQNNLKSLEA 209
Query: 65 NEQKPYQDKANQYEEQIKTLENDLNWAE 92
+K Y K ++YEE+IK L + L AE
Sbjct: 210 QAEK-YSQKEDKYEEEIKVLTDKLKEAE 236
>gi|50190|emb|CAA41271.1| beta-tropomyosin [Mus musculus]
pir||S23256 tropomyosin beta - mouse
Length = 284
Score = 36.2 bits (82), Expect = 0.70
Identities = 23/88 (26%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 5 QENEMDFEKIVREVEIGIKDLSKNKRGIEARGGAELLRNRIGRAKQILRSYKLDFRELAK 64
++++ +E++ R++ I +L +++ AE+ +R + ++ LR+ + L
Sbjct: 156 EDSDRKYEEVARKLVILEGELERSEER------AEVAESRARQLEEELRTMDQALKSLIA 209
Query: 65 NEQKPYQDKANQYEEQIKTLENDLNWAE 92
+E++ Y K ++YEE+IK LE L AE
Sbjct: 210 SEEE-YSTKEDKYEEEIKLLEEKLKEAE 236
>gi|6573280|gb|AAF17621.1| beta tropomyosin [Homo sapiens]
Length = 257
Score = 36.2 bits (82), Expect = 0.70
Identities = 23/88 (26%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 5 QENEMDFEKIVREVEIGIKDLSKNKRGIEARGGAELLRNRIGRAKQILRSYKLDFRELAK 64
++++ +E++ R++ I +L +++ AE+ +R + ++ LR+ + L
Sbjct: 156 EDSDRKYEEVARKLVILEGELERSEER------AEVAESRARQLEEELRTMDQALKSLMA 209
Query: 65 NEQKPYQDKANQYEEQIKTLENDLNWAE 92
+E++ Y K ++YEE+IK LE L AE
Sbjct: 210 SEEE-YSTKEDKYEEEIKLLEEKLKEAE 236
>gi|22415765|dbj|BAC10577.1| skeletal muscle tropomyosin1-2
[Takifugu rubripes]
Length = 284
Score = 36.2 bits (82), Expect = 0.70
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 5 QENEMDFEKIVREVEIGIKDLSKNKRGIEARGGAELLRNRIGRAKQILRSYKLDFRELAK 64
+E + +E++ R++ I DL + + AEL ++ ++ L++ + + + L
Sbjct: 156 EEADRKYEEVARKLVIIESDLERTEER------AELSESKCSELEEELKTVQNNLKSLEA 209
Query: 65 NEQKPYQDKANQYEEQIKTLENDLNWAE 92
+K Y K ++YEE+IK L + L AE
Sbjct: 210 QAEK-YSQKEDKYEEEIKVLTDKLKEAE 236
>gi|17737875|ref|NP_524298.1| CG9474-PA [Drosophila melanogaster]
gb|AAF54443.1| CG9474-PA [Drosophila melanogaster]
gb|AAF73834.1| SNAP-24 protein [Drosophila melanogaster]
Length = 212
Score = 35.8 bits (81), Expect = 0.91
Identities = 19/70 (27%), Positives = 35/70 (49%)
Query: 114 TEYQETMXXXXXXXXXXXXTTHRILSEVGQINEVGTSTLEEMAVQEEQMKRIQKDMEEID 173
TE QE +T R+L+ + + E G TL + Q EQ+ RI++ M+ I+
Sbjct: 11 TELQELQFKSGQVADESLESTRRMLALMDESKEAGIRTLVALDDQGEQLDRIEEGMDRIN 70
Query: 174 GNLKLATRQM 183
+++ A + +
Sbjct: 71 ADMREAEKNL 80
>gi|57108257|ref|XP_535506.1| PREDICTED: similar to tropomyosin 1
(alpha) [Canis familiaris]
Length = 543
Score = 35.8 bits (81), Expect = 0.91
Identities = 25/88 (28%), Positives = 45/88 (50%), Gaps = 7/88 (7%)
Query: 5 QENEMDFEKIVREVEIGIKDLSKNKRGIEARGGAELLRNRIGRAKQILRSYKLDFRELAK 64
++ + +E++ R++ I DL + A AEL +++ + ++ LR + L
Sbjct: 415 EDADRKYEEVARKLVIIESDLER------AEERAELSESQVRQLEEQLRIMDQTLKALMA 468
Query: 65 NEQKPYQDKANQYEEQIKTLENDLNWAE 92
E K Y K ++YEE+IK L + L AE
Sbjct: 469 AEDK-YSQKEDKYEEEIKVLSDKLKEAE 495
>gi|45382323|ref|NP_990732.1| tropomyosin (CTm4) [Gallus gallus]
emb|CAA41058.1| alpha-tropomyosin of fibroblasts F1 [Gallus gallus]
pir||S24401 tropomyosin 2, skeletal muscle alpha splice form CTm4 - chicken
gb|AAA65120.1| tropomyosin (CTm4)
Length = 284
Score = 35.8 bits (81), Expect = 0.91
Identities = 26/88 (29%), Positives = 45/88 (50%), Gaps = 7/88 (7%)
Query: 5 QENEMDFEKIVREVEIGIKDLSKNKRGIEARGGAELLRNRIGRAKQILRSYKLDFRELAK 64
+E + +E++ R++ I DL + A AEL +++ + ++ LR + L
Sbjct: 156 EEADRKYEEVARKLVIIEGDLER------AEERAELSESQVRQLEEQLRIMDQTLKALMA 209
Query: 65 NEQKPYQDKANQYEEQIKTLENDLNWAE 92
E K Y K ++YEE+IK L + L AE
Sbjct: 210 AEDK-YSQKEDKYEEEIKVLTDKLKEAE 236
>gi|211109|gb|AAA48579.1| alpha-tropomyosin [Gallus gallus]
Length = 283
Score = 35.8 bits (81), Expect = 0.91
Identities = 26/88 (29%), Positives = 45/88 (50%), Gaps = 7/88 (7%)
Query: 5 QENEMDFEKIVREVEIGIKDLSKNKRGIEARGGAELLRNRIGRAKQILRSYKLDFRELAK 64
+E + +E++ R++ I DL + A AEL +++ + ++ LR + L
Sbjct: 156 EEADRKYEEVARKLVIIEGDLER------AEERAELSESQVRQLEEQLRIMDQTLKALMA 209
Query: 65 NEQKPYQDKANQYEEQIKTLENDLNWAE 92
E K Y K ++YEE+IK L + L AE
Sbjct: 210 AEDK-YSQKEDKYEEEIKVLTDKLKEAE 236
>gi|16944601|emb|CAC18617.2| hypothetical protein [Neurospora
crassa]
ref|XP_323625.1| hypothetical protein [Neurospora crassa]
gb|EAA31839.1| hypothetical protein [Neurospora crassa]
Length = 394
Score = 35.8 bits (81), Expect = 0.91
Identities = 19/79 (24%), Positives = 41/79 (51%)
Query: 6 ENEMDFEKIVREVEIGIKDLSKNKRGIEARGGAELLRNRIGRAKQILRSYKLDFRELAKN 65
E+E + E+++ V ++DL+K K G + G + G A + L + K D R++
Sbjct: 283 ESEKEMERVLENVLKEVEDLNKGKSGKKVDGEGDDPPGASGDAGKALEAEKSDDRDMLTK 342
Query: 66 EQKPYQDKANQYEEQIKTL 84
++ +++ + EE++ L
Sbjct: 343 YEEAIEEEVEKAEEEVTKL 361
>gi|27263171|dbj|BAC45225.1| synaptosome-associated protein of 25
kDa [Procambarus clarkii]
Length = 207
Score = 35.8 bits (81), Expect = 0.91
Identities = 18/70 (25%), Positives = 35/70 (49%)
Query: 114 TEYQETMXXXXXXXXXXXXTTHRILSEVGQINEVGTSTLEEMAVQEEQMKRIQKDMEEID 173
++ QE +T R+LS + + G TL + Q EQ+ RI++ M++I+
Sbjct: 10 SDLQELQYKASQQTDETLESTRRMLSLCEESQDAGAKTLYMLGEQGEQLDRIEEGMDQIN 69
Query: 174 GNLKLATRQM 183
++K A + +
Sbjct: 70 ADMKEAEKNL 79
Database: /home/dicty1/resource/WorkingDBs//nr-clean
Posted date: Mar 10, 2005 12:10 PM
Number of letters in database: 788,375,511
Number of sequences in database: 2,329,665
Lambda K H
0.310 0.127 0.331
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 229,979,998
Number of Sequences: 2329665
Number of extensions: 7017736
Number of successful extensions: 27992
Number of sequences better than 1.0: 60
Number of HSP's better than 1.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 27933
Number of HSP's gapped (non-prelim): 79
length of query: 232
length of database: 788,375,511
effective HSP length: 123
effective length of query: 109
effective length of database: 501,826,716
effective search space: 54699112044
effective search space used: 54699112044
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 81 (35.8 bits)
BLASTP 2.2.1 [Jul-12-2001]