Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DDB0185655
(378 letters)
Database: /home/dicty1/resource/WorkingDBs//nr-clean
2,329,665 sequences; 788,375,511 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|45383087|ref|NP_989877.1| RAD52B protein [Gallus gallus] >gi|... 41 0.063
gi|21360555|gb|AAM47474.1| AT4g00830/A_TM018A10_14 [Arabidopsis ... 40 0.14
gi|7267422|emb|CAB80892.1| putative protein [Arabidopsis thalian... 40 0.14
gi|49656058|emb|CAG88693.1| unnamed protein product [Debaryomyce... 39 0.24
gi|46100873|gb|EAK86106.1| hypothetical protein UM04775.1 [Ustil... 38 0.53
gi|49656057|emb|CAG88692.1| unnamed protein product [Debaryomyce... 37 0.69
gi|44985841|gb|AAS54452.1| AGL038Cp [Ashbya gossypii ATCC 10895]... 37 0.91
>gi|45383087|ref|NP_989877.1| RAD52B protein [Gallus gallus]
dbj|BAC02561.1| RAD52B [Gallus gallus]
Length = 277
Score = 40.8 bits (94), Expect = 0.063
Identities = 54/224 (24%), Positives = 96/224 (42%), Gaps = 23/224 (10%)
Query: 48 ELFLFTIPS-KEKTLMLTDLDENT-TKKDIEIAFSRFGLIYDIVVYTNKN--SKRILGLI 103
E+ F +P+ +TL++ L+ + + FS+FGL+Y + V++N +I
Sbjct: 3 EVLEFRVPAGSAQTLLVWGLEPTVGLEHSLFSVFSKFGLLYSVRVHSNAAVAGPGCYAII 62
Query: 104 KYCLENSAISALNHHHTIEKIKING--RECTSVVLSSFKSDKPFEIPFPKSLQIINHLLG 161
K+ A S H +++ N + C F+ + + K ++ NH LG
Sbjct: 63 KFYSAADA-SRAQHACNGQRLFQNSPLKVCVCTKQKGFQQ-QVLALNSNKCQELANHYLG 120
Query: 162 FNQWSTEIDRFEHEYTREILLETDLNGVPLQTPIRKYESKWYALVYSTFKQIDVRISTVS 221
FN WS+ I ++ + D N + +K ++ V T VR V
Sbjct: 121 FNGWSSRIITLQN-----VSGFDDEN----EEVGKKRSVRYLCAVEVTLPNHGVRTRGVG 171
Query: 222 HG-----VGEDSCKI-EATRNAKKVAVSNSRKLAFTKIGILIIK 259
G GED + ATR +K+AV + AF KI +++++
Sbjct: 172 LGEADVESGEDPLEFGTATRRVQKLAVGKALSSAFQKILLVVLE 215
>gi|21360555|gb|AAM47474.1| AT4g00830/A_TM018A10_14 [Arabidopsis
thaliana]
ref|NP_567192.1| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana]
gb|AAK32943.1| AT4g00830/A_TM018A10_14 [Arabidopsis thaliana]
Length = 495
Score = 39.7 bits (91), Expect = 0.14
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 59 KTLMLTDLDENTTKKDIEIAFSRFGLIYDIVVYTNKNSKRILGLIKYCLENSAISALNHH 118
K L + ++ ENT+ + ++ F R G + IV K KR G + Y +SA+ A+
Sbjct: 292 KALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSALKAVK-- 349
Query: 119 HTIEKIKINGRECTSVVLSSFKSDK 143
E+ ++NG+ VVL+ ++++
Sbjct: 350 -DTERYEVNGQP-LEVVLAKPQAER 372
>gi|7267422|emb|CAB80892.1| putative protein [Arabidopsis thaliana]
pir||T01563 hypothetical protein A_TM018A10.14 - Arabidopsis thaliana
gb|AAB62861.1| similar to nucleolin protein [Arabidopsis thaliana]
Length = 521
Score = 39.7 bits (91), Expect = 0.14
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 59 KTLMLTDLDENTTKKDIEIAFSRFGLIYDIVVYTNKNSKRILGLIKYCLENSAISALNHH 118
K L + ++ ENT+ + ++ F R G + IV K KR G + Y +SA+ A+
Sbjct: 318 KALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSALKAVK-- 375
Query: 119 HTIEKIKINGRECTSVVLSSFKSDK 143
E+ ++NG+ VVL+ ++++
Sbjct: 376 -DTERYEVNGQP-LEVVLAKPQAER 398
>gi|49656058|emb|CAG88693.1| unnamed protein product [Debaryomyces
hansenii CBS767]
ref|XP_460389.1| unnamed protein product [Debaryomyces hansenii]
Length = 278
Score = 38.9 bits (89), Expect = 0.24
Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 18/175 (10%)
Query: 49 LFLFTIPSKEKTLMLTDLDENTTKKDIEIAFSRFGLIYDIVVYTNKNSKRILGLIKYCLE 108
LF I +TL DE T K D+E GLIYD + +++ +KY +
Sbjct: 4 LFRLPIELMGETLSHLSPDELTYKFDLE------GLIYDTTFNSYSKVRQMAFFVKYKGK 57
Query: 109 NSAISA--LNHHHTIEKIKINGRECTSVVLS-SFKSDKPFEIPFPKSLQIINHLLGFNQW 165
+ IS +N H + ++ T +V+ S F+ S I+ +L +
Sbjct: 58 HVTISNTNINDTHQLSNFQLQYLNITQMVIKPKVISFVLFDCNNRSSYNFISFMLSHH-- 115
Query: 166 STEIDRFEHEYTREILLETD-------LNGVPLQTPIRKYESKWYALVYSTFKQI 213
+ F +E++ ++ + D LNG+ Y W+++ Y T KQI
Sbjct: 116 FKLLRSFTNEFSFQLSIHDDNLIDINLLNGILYHFSYNNYVVNWFSIHYKTVKQI 170
>gi|46100873|gb|EAK86106.1| hypothetical protein UM04775.1 [Ustilago
maydis 521]
ref|XP_402390.1| hypothetical protein UM04775.1 [Ustilago maydis 521]
Length = 342
Score = 37.7 bits (86), Expect = 0.53
Identities = 28/76 (36%), Positives = 36/76 (46%), Gaps = 4/76 (5%)
Query: 55 PSKEKTLMLTDLDENTTKKDIEIAFSRFGLIYDIVVYTNKNSK-RILGLIKYCLENSAIS 113
P KTL L LD + T+ D+ F +G I I + +KN K R I Y E +
Sbjct: 127 PDAYKTLFLARLDYSVTESDLHREFDMYGPIEQIKLIRDKNGKSRGYAFIAYERERDMKA 186
Query: 114 ALNHHHTIEKIKINGR 129
A + E IKINGR
Sbjct: 187 A---YKDAEGIKINGR 199
>gi|49656057|emb|CAG88692.1| unnamed protein product [Debaryomyces
hansenii CBS767]
ref|XP_460388.1| unnamed protein product [Debaryomyces hansenii]
Length = 417
Score = 37.4 bits (85), Expect = 0.69
Identities = 41/175 (23%), Positives = 72/175 (40%), Gaps = 18/175 (10%)
Query: 49 LFLFTIPSKEKTLMLTDLDENTTKKDIEIAFSRFGLIYDIVVYTNKNSKRILGLIKYCLE 108
LF I +TL DE T K D+E GLIYD + +++ +KY +
Sbjct: 4 LFRLPIELMGETLSHLSPDELTYKFDLE------GLIYDTTFNSYSKVRQMAFFVKYKGK 57
Query: 109 NSAISA--LNHHHTIEKIKINGRECTSVVLS-SFKSDKPFEIPFPKSLQIINHLLGFNQW 165
+ IS +N H + ++ T +V+ S F+ S I+ +L +
Sbjct: 58 HVTISNTNINDTHQLSNFQLQYLNITQMVIKPKVISFVLFDCNNRSSYNFISFMLSHH-- 115
Query: 166 STEIDRFEHEYTREILLETD-------LNGVPLQTPIRKYESKWYALVYSTFKQI 213
+ F ++++ ++ + D LNG+ Y W+++ Y T KQI
Sbjct: 116 FKLLKSFTNKFSFQLSIHDDNLIDINLLNGILYHFSYNNYIVNWFSIHYKTVKQI 170
>gi|44985841|gb|AAS54452.1| AGL038Cp [Ashbya gossypii ATCC 10895]
ref|NP_986628.1| AGL038Cp [Eremothecium gossypii]
Length = 712
Score = 37.0 bits (84), Expect = 0.91
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 58 EKTLMLTDLDENTTKKDIEIAFSRFGLIYDIVVYTNKNSKRILGLIKYCLENSAISALNH 117
+K++ ++ LD + TK+ + FS+ G + D+ + N+ ++ IKY E + +AL
Sbjct: 379 KKSIFVSQLDPSVTKEKLTQRFSKHGKVEDVNLIFKDNNTKVFAFIKYETEEATATALER 438
Query: 118 HH 119
+
Sbjct: 439 EN 440
Database: /home/dicty1/resource/WorkingDBs//nr-clean
Posted date: Mar 10, 2005 12:10 PM
Number of letters in database: 788,375,511
Number of sequences in database: 2,329,665
Lambda K H
0.319 0.137 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 397,993,036
Number of Sequences: 2329665
Number of extensions: 14770806
Number of successful extensions: 32617
Number of sequences better than 1.0: 7
Number of HSP's better than 1.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 32613
Number of HSP's gapped (non-prelim): 7
length of query: 378
length of database: 788,375,511
effective HSP length: 129
effective length of query: 249
effective length of database: 487,848,726
effective search space: 121474332774
effective search space used: 121474332774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 84 (37.0 bits)
BLASTP 2.2.1 [Jul-12-2001]