Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DDB0184284
(1825 letters)
Database: /home/dicty1/resource/WorkingDBs//nr-clean
2,329,665 sequences; 788,375,511 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21229078|ref|NP_635000.1| type I restriction-modification sys... 198 1e-48
gi|57506070|ref|ZP_00371993.1| probable type I restriction enzym... 192 8e-47
gi|48895667|ref|ZP_00328651.1| COG0610: Type I site-specific res... 191 2e-46
gi|38505824|ref|NP_942394.1| type I site-specific deoxyribonucle... 189 9e-46
gi|50086398|ref|YP_047908.1| putative type I restriction-modific... 175 1e-41
gi|53800416|ref|ZP_00359771.1| COG0610: Type I site-specific res... 173 5e-41
gi|48839712|ref|ZP_00296642.1| COG0610: Type I site-specific res... 169 6e-40
gi|52549654|gb|AAU83503.1| type I site-specific restriction-modi... 169 1e-39
gi|49243380|emb|CAG41797.1| putative type I restriction enzyme p... 169 1e-39
gi|52426226|ref|YP_089363.1| HsdR protein [Mannheimia succinicip... 168 1e-39
gi|9948809|gb|AAG06120.1| hypothetical protein PA2732 [Pseudomon... 168 1e-39
gi|15839310|ref|NP_299998.1| type I restriction-modification sys... 167 2e-39
gi|53756220|gb|AAU90511.1| type I restriction-modification syste... 166 8e-39
gi|34762431|ref|ZP_00143431.1| TYPE I RESTRICTION-MODIFICATION S... 165 1e-38
gi|52857360|ref|ZP_00341546.1| COG0610: Type I site-specific res... 163 4e-38
gi|52007207|ref|ZP_00334585.1| COG0610: Type I site-specific res... 161 2e-37
gi|28199930|ref|NP_780244.1| type I restriction-modification sys... 159 6e-37
gi|56459753|ref|YP_155034.1| Type I site-specific restriction-mo... 158 2e-36
gi|42629287|ref|ZP_00154835.1| COG0610: Type I site-specific res... 157 3e-36
gi|42632163|ref|ZP_00157701.1| COG0610: Type I site-specific res... 156 6e-36
gi|48243623|gb|AAT40773.1| putative type I site-specific restric... 155 1e-35
gi|56750492|ref|YP_171193.1| hypothetical protein syc0483_c [Syn... 153 5e-35
gi|9656287|gb|AAF94914.1| type I restriction enzyme HsdR, putati... 149 8e-34
gi|48853355|ref|ZP_00307528.1| COG0610: Type I site-specific res... 148 1e-33
gi|45522101|ref|ZP_00173617.1| COG0610: Type I site-specific res... 146 5e-33
gi|54308080|ref|YP_129100.1| putative type I restriction enzyme ... 146 7e-33
gi|53718588|ref|YP_107574.1| hypothetical protein BPSL0945 [Burk... 145 9e-33
gi|41690596|ref|ZP_00147128.1| COG0610: Type I site-specific res... 143 4e-32
gi|16124876|ref|NP_419440.1| hypothetical protein CC0623 [Caulob... 142 1e-31
gi|21109200|gb|AAM37743.1| type I restriction-modification syste... 136 7e-30
gi|23473873|ref|ZP_00129168.1| COG0610: Type I site-specific res... 132 1e-28
gi|23491885|dbj|BAC16860.1| conserved hypothetical protein [Cory... 131 2e-28
gi|53690938|ref|ZP_00346524.1| COG0610: Type I site-specific res... 128 2e-27
gi|53688022|ref|ZP_00109780.2| COG0610: Type I site-specific res... 120 5e-25
gi|48868351|ref|ZP_00321696.1| COG0610: Type I site-specific res... 105 2e-20
gi|24371976|ref|NP_716018.1| type I restriction-modification sys... 97 4e-18
gi|48782405|ref|ZP_00278934.1| COG0610: Type I site-specific res... 97 5e-18
gi|54030757|ref|ZP_00362893.1| COG0610: Type I site-specific res... 96 8e-18
gi|551948|gb|AAA98302.1| unknown [Geobacillus stearothermophilus] 96 8e-18
gi|10954527|ref|NP_044166.1| type I restriction enzyme subunit R... 95 2e-17
gi|28868304|ref|NP_790923.1| type I restriction-modification enz... 94 5e-17
gi|19919302|gb|AAM08232.1| putative type I restriction enzyme [L... 91 3e-16
gi|49658900|emb|CAF28526.1| hsdr-like Type I restriction enzyme ... 90 7e-16
gi|59713722|ref|YP_206497.1| type I restriction-modification sys... 87 5e-15
gi|48868205|ref|ZP_00321573.1| COG0610: Type I site-specific res... 87 6e-15
gi|1685100|gb|AAC44668.1| HSDR >gi|2126351|pir||JC5216 type I si... 86 8e-15
gi|42630520|ref|ZP_00156059.1| COG0610: Type I site-specific res... 86 1e-14
gi|52082593|ref|YP_081384.1| putative Type I site-specific deoxy... 86 1e-14
gi|47459118|ref|YP_015980.1| type I restriction enzyme r protein... 86 1e-14
gi|46128931|ref|ZP_00154665.2| COG0610: Type I site-specific res... 85 2e-14
gi|2411488|gb|AAB70710.1| HsdR [Klebsiella pneumoniae] >gi|74672... 85 2e-14
gi|52010778|ref|ZP_00338137.1| COG0610: Type I site-specific res... 84 3e-14
gi|42525030|ref|NP_970410.1| type I restriction-modification sys... 83 7e-14
gi|1679868|emb|CAA68059.1| Sty SBLI [Salmonella enterica] 83 7e-14
gi|30248399|ref|NP_840469.1| Restriction enzymes type I helicase... 83 9e-14
gi|15839314|ref|NP_300002.1| type I restriction-modification sys... 82 1e-13
gi|46141215|ref|ZP_00145477.2| COG0610: Type I site-specific res... 82 1e-13
gi|53692041|ref|ZP_00347095.1| COG0610: Type I site-specific res... 82 2e-13
gi|56419917|ref|YP_147235.1| type I restriction-modification sys... 81 3e-13
gi|51598164|ref|YP_072355.1| possible type I restriction enzyme ... 81 3e-13
gi|15603406|ref|NP_246480.1| HsdR [Pasteurella multocida subsp. ... 81 3e-13
gi|21226533|ref|NP_632455.1| type I restriction-modification sys... 81 3e-13
gi|46318360|ref|ZP_00218822.1| COG0610: Type I site-specific res... 81 3e-13
gi|30250446|ref|NP_842516.1| Restriction enzymes type I helicase... 81 3e-13
gi|16273199|ref|NP_439437.1| type I restriction enzyme [Haemophi... 80 5e-13
gi|24461250|gb|AAN61997.1| HsdR [Lactobacillus sakei] >gi|324555... 80 5e-13
gi|23464209|gb|AAN34017.1| type I restriction-modification enzym... 80 6e-13
gi|2313977|gb|AAD07892.1| type I restriction enzyme R protein (h... 80 6e-13
gi|46142301|ref|ZP_00204237.1| COG0610: Type I site-specific res... 80 6e-13
gi|2622038|gb|AAB85438.1| type I restriction enzyme [Methanother... 80 8e-13
gi|58038318|ref|YP_190287.1| Putative type I restriction enzyme ... 80 8e-13
gi|53732697|ref|ZP_00154929.2| COG0610: Type I site-specific res... 80 8e-13
gi|49257051|dbj|BAD24840.1| type I restriction-modification syst... 80 8e-13
gi|17988794|ref|NP_541427.1| TYPE I RESTRICTION-MODIFICATION SYS... 79 1e-12
gi|56900920|gb|AAW31753.1| type I restriction enzyme HsdR [Vibri... 78 2e-12
gi|21228306|ref|NP_634228.1| hypothetical protein MM2204 [Methan... 78 2e-12
gi|45656817|ref|YP_000903.1| type I restriction enzyme [Leptospi... 77 4e-12
gi|22995174|ref|ZP_00039655.1| COG0610: Type I site-specific res... 77 4e-12
gi|46142217|ref|ZP_00147940.2| COG0610: Type I site-specific res... 77 4e-12
gi|32033689|ref|ZP_00133984.1| COG0610: Type I site-specific res... 77 4e-12
gi|6137147|gb|AAF04356.1| type IC restriction subunit [Streptoco... 77 5e-12
gi|15669399|ref|NP_248209.1| type I restriction-modification enz... 77 7e-12
gi|21228835|ref|NP_634757.1| hypothetical protein MM2733 [Methan... 77 7e-12
gi|42631821|ref|ZP_00157359.1| COG0610: Type I site-specific res... 77 7e-12
gi|17133741|dbj|BAB76303.1| type I site-specific deoxyribonuclea... 77 7e-12
gi|2129336|pir||E64451 type I restriction enzyme homolog - Metha... 77 7e-12
gi|28199934|ref|NP_780248.1| type I restriction-modification sys... 76 9e-12
gi|11499298|ref|NP_070536.1| type I restriction-modification enz... 76 9e-12
gi|19881310|gb|AAM00900.1| HsdR [Campylobacter jejuni] >gi|19698... 76 9e-12
gi|37528152|ref|NP_931497.1| Type I site-specific deoxyribonucle... 76 1e-11
gi|21232336|ref|NP_638253.1| HsdR protein [Xanthomonas campestri... 76 1e-11
gi|9789462|gb|AAF98314.1| HsdR [Lactococcus lactis subsp. lactis... 75 1e-11
gi|2689698|gb|AAB91415.1| restriction subunit [Lactococcus lacti... 75 1e-11
gi|47572323|ref|ZP_00242368.1| COG0610: Type I site-specific res... 75 1e-11
gi|42525882|ref|NP_970980.1| type I restriction-modification sys... 75 2e-11
gi|21228394|ref|NP_634316.1| type I restriction-modification sys... 75 2e-11
gi|48477148|ref|YP_022854.1| type I restriction-modification sys... 74 3e-11
gi|15612489|ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICT... 74 3e-11
gi|15611851|ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICT... 74 3e-11
gi|58583075|ref|YP_202091.1| type I restriction-modification sys... 74 3e-11
gi|7467215|pir||T30818 hsdR protein - Klebsiella pneumoniae >gi|... 74 3e-11
gi|53757541|gb|AAU91832.1| type I restriction-modification syste... 74 6e-11
gi|6968968|emb|CAB73965.1| putative type I restriction enzyme R ... 74 6e-11
gi|19881241|gb|AAM00850.1| HsdR [Campylobacter jejuni] 74 6e-11
gi|19881235|gb|AAM00845.1| HsdR [Campylobacter jejuni] 74 6e-11
gi|19881208|gb|AAM00823.1| HsdR [Campylobacter jejuni] 74 6e-11
gi|19881202|gb|AAM00818.1| HsdR [Campylobacter jejuni] 74 6e-11
gi|15789431|ref|NP_279255.1| RmeR [Halobacterium salinarum NRC-1... 73 7e-11
gi|22996439|ref|ZP_00040695.1| COG0610: Type I site-specific res... 73 7e-11
gi|57505321|ref|ZP_00371250.1| type I restriction enzyme R prote... 73 7e-11
gi|38234847|ref|NP_940614.1| Putative type I restriction/modific... 73 7e-11
gi|2865242|gb|AAC15896.1| type IC restriction subunit [Lactococc... 73 7e-11
gi|1363459|pir||S49394 HsdR1 protein - Mycoplasma pulmonis >gi|4... 72 2e-10
gi|24377275|gb|AAN58610.1| putative type I restriction-modificat... 72 2e-10
gi|46580113|ref|YP_010921.1| type I restriction-modification enz... 72 2e-10
gi|57865914|ref|YP_190017.1| type I restriction-modification sys... 72 2e-10
gi|49237263|ref|ZP_00331318.1| COG0610: Type I site-specific res... 72 2e-10
gi|21674690|ref|NP_662755.1| type I restriction system endonucle... 70 5e-10
gi|15828903|ref|NP_326263.1| RESTRICTION MODIFICATION ENZYME SUB... 70 6e-10
gi|15829148|ref|NP_326508.1| RESTRICTION-MODIFICATION ENZYME SUB... 70 6e-10
gi|55822674|ref|YP_141115.1| type I restriction-modification sys... 70 8e-10
gi|28867251|ref|NP_789870.1| type I site-specific deoxyribonucle... 70 8e-10
gi|49243514|emb|CAG41938.1| putative type I restriction enzyme [... 70 8e-10
gi|14245962|dbj|BAB56357.1| probable type I restriction enzyme r... 70 8e-10
gi|53765022|ref|ZP_00161201.2| COG0610: Type I site-specific res... 70 8e-10
gi|53729670|ref|ZP_00149994.2| COG0610: Type I site-specific res... 70 8e-10
gi|7226069|gb|AAF41246.1| type I restriction enzyme EcoR124II R ... 69 1e-09
gi|49482437|ref|YP_039661.1| putative type I restriction enzyme ... 69 1e-09
gi|50914975|ref|YP_060947.1| Type I restriction-modification sys... 69 1e-09
gi|23113394|ref|ZP_00098774.1| COG0610: Type I site-specific res... 69 1e-09
gi|48853287|ref|ZP_00307467.1| COG0610: Type I site-specific res... 69 1e-09
gi|56808771|ref|ZP_00366487.1| COG0610: Type I site-specific res... 69 1e-09
gi|59800850|ref|YP_207562.1| putative type I site-specific deoxy... 69 1e-09
gi|2581809|gb|AAC25971.1| endonuclease (R) subunit homolog [Myco... 69 1e-09
gi|34763948|ref|ZP_00144844.1| TYPE I RESTRICTION-MODIFICATION S... 68 2e-09
gi|53795635|ref|ZP_00356694.1| COG0610: Type I site-specific res... 68 2e-09
gi|46143838|ref|ZP_00133968.2| COG0610: Type I site-specific res... 68 2e-09
gi|23467874|ref|ZP_00123451.1| COG0610: Type I site-specific res... 68 2e-09
gi|4467404|emb|CAA31543.1| unnamed protein product [Escherichia ... 68 3e-09
gi|19746825|ref|NP_607961.1| putative type I site-specific deoxy... 68 3e-09
gi|60492761|emb|CAH07535.1| putative type I restriction enzyme R... 67 4e-09
gi|48825428|ref|ZP_00286678.1| COG0610: Type I site-specific res... 67 5e-09
gi|34557504|ref|NP_907319.1| HSDR PROTEIN PROBABLE TYPE I RESTRI... 67 5e-09
gi|13622935|gb|AAK34612.1| putative type I site-specific deoxyri... 67 5e-09
gi|48857009|ref|ZP_00311166.1| COG0610: Type I site-specific res... 67 7e-09
gi|2314575|gb|AAD08445.1| type I restriction enzyme R protein (h... 66 9e-09
gi|28896554|ref|NP_802904.1| putative type I site-specific deoxy... 66 1e-08
gi|57651196|ref|YP_185079.1| type I restriction-modification enz... 66 1e-08
gi|15839328|ref|NP_300016.1| type I restriction-modification sys... 65 2e-08
gi|52079178|ref|YP_077969.1| HsdRI [Bacillus licheniformis ATCC ... 65 2e-08
gi|46156519|ref|ZP_00132562.2| COG0610: Type I site-specific res... 65 2e-08
gi|53758784|gb|AAU93075.1| type I restriction-modification syste... 64 4e-08
gi|38505927|ref|NP_942545.1| type I restriction-modification sys... 64 4e-08
gi|31541736|gb|AAP57035.1| HsdR [Mycoplasma gallisepticum R] >gi... 63 7e-08
gi|60492049|emb|CAH06811.1| putative type I restriction enzyme [... 63 7e-08
gi|48839096|ref|ZP_00296031.1| COG0610: Type I site-specific res... 63 7e-08
gi|45522310|ref|ZP_00173825.1| COG0610: Type I site-specific res... 63 7e-08
gi|13357652|ref|NP_077926.1| type I restriction enzyme R protein... 63 1e-07
gi|45510657|ref|ZP_00162989.1| COG0610: Type I site-specific res... 63 1e-07
gi|53731382|ref|ZP_00148539.2| COG0610: Type I site-specific res... 63 1e-07
gi|15828549|ref|NP_325909.1| RESTRICTION-MODIFICATION ENZYME SUB... 62 1e-07
gi|50590811|ref|ZP_00332158.1| COG0610: Type I site-specific res... 62 2e-07
gi|28377764|ref|NP_784656.1| type I site-specific deoxyribonucle... 62 2e-07
gi|2313568|gb|AAD07526.1| type I restriction enzyme R protein (h... 61 4e-07
gi|47574853|ref|ZP_00244888.1| COG0610: Type I site-specific res... 61 4e-07
gi|15795175|ref|NP_247089.2| Type I restriction-modification enz... 60 5e-07
gi|2826244|gb|AAB98104.1| type I restriction-modification enzyme... 60 5e-07
gi|2129335|pir||D64315 type I restriction enzyme homolog - Metha... 60 5e-07
gi|23494172|dbj|BAC19139.1| putative type I restriction-modifica... 60 8e-07
gi|52853569|ref|ZP_00341000.1| COG0610: Type I site-specific res... 59 1e-06
gi|27380123|ref|NP_771652.1| putative type I restriction enzyme ... 59 2e-06
gi|15964350|ref|NP_384703.1| PUTATIVE TYPE I RESTRICTION ENZYME ... 59 2e-06
gi|59801121|ref|YP_207833.1| putative type I restriction enzyme ... 57 5e-06
gi|37678997|ref|NP_933606.1| type I site-specific restriction-mo... 57 7e-06
gi|37680388|ref|NP_934997.1| putative type I site-specific restr... 56 1e-05
gi|51893046|ref|YP_075737.1| type I restriction-modification sys... 55 2e-05
gi|10717104|gb|AAG22017.1| putative HsdR [Streptococcus thermoph... 55 2e-05
gi|23492094|dbj|BAC17069.1| conserved hypothetical protein [Cory... 54 5e-05
gi|48868625|ref|ZP_00321936.1| COG0610: Type I site-specific res... 52 2e-04
gi|16799596|ref|NP_469864.1| hypothetical protein lin0521 [Liste... 51 4e-04
gi|15672632|ref|NP_266806.1| type I restriction enzyme R protein... 50 5e-04
gi|22299773|ref|NP_683020.1| type I site-specific deoxyribonucle... 50 5e-04
gi|48832815|ref|ZP_00289843.1| COG0610: Type I site-specific res... 49 0.001
gi|30022537|ref|NP_834168.1| Type I restriction-modification sys... 48 0.002
gi|32262969|gb|AAP78015.1| hypothetical protein HH1418 [Helicoba... 47 0.004
gi|22995100|ref|ZP_00039582.1| COG0610: Type I site-specific res... 47 0.004
gi|32476945|ref|NP_869939.1| HsdR [Rhodopirellula baltica SH 1] ... 47 0.006
gi|56679311|gb|AAV95977.1| type I restriction-modification syste... 46 0.009
gi|3057061|gb|AAC38345.1| HsdR [Lactococcus lactis] 46 0.009
gi|5457726|emb|CAB49217.1| hsdR type I restriction-modification ... 46 0.012
gi|56501375|emb|CAI04753.1| conserved hypothetical protein [Plas... 46 0.012
gi|23612273|ref|NP_703853.1| hypothetical protein [Plasmodium fa... 45 0.016
gi|46361144|emb|CAG25008.1| hypothetical protein; hypothetical p... 45 0.016
gi|53729080|ref|ZP_00134181.2| COG0610: Type I site-specific res... 45 0.021
gi|15828567|ref|NP_325927.1| EXCINUCLEASE ABC SUBUNIT B [Mycopla... 44 0.036
gi|48839274|ref|ZP_00296207.1| COG4096: Type I site-specific res... 44 0.047
gi|56499218|emb|CAH95438.1| Pb-reticulocyte binding protein [Pla... 44 0.047
gi|27228587|ref|NP_758637.1| helicase [Pseudomonas resinovorans]... 43 0.10
gi|46444877|gb|EAL04149.1| potential pre-mRNA splicing factor [C... 43 0.10
gi|10952738|gb|AAG25055.1| putative RNA splicing factor [Candida... 43 0.10
gi|30022538|ref|NP_834169.1| Type I restriction-modification sys... 42 0.14
gi|23480300|gb|EAA16896.1| hypothetical protein [Plasmodium yoel... 42 0.14
gi|23509859|ref|NP_702526.1| rhoptry protein, putative [Plasmodi... 42 0.18
gi|28897846|ref|NP_797451.1| putative helicase [Vibrio parahaemo... 42 0.18
gi|56476904|ref|YP_158493.1| Type I restriction-modification sys... 42 0.23
gi|23613779|ref|NP_704800.1| hypothetical protein [Plasmodium fa... 42 0.23
gi|49657131|emb|CAG89881.1| unnamed protein product [Debaryomyce... 42 0.23
gi|6320539|ref|NP_010619.1| Ydr332wp [Saccharomyces cerevisiae] ... 42 0.23
gi|23481557|gb|EAA17801.1| homeobox-containing protein [Plasmodi... 42 0.23
gi|27362327|gb|AAO11182.1| Hypothetical helicase-related protein... 41 0.30
gi|37679608|ref|NP_934217.1| DNA or RNA helicase [Vibrio vulnifi... 41 0.30
gi|15604076|ref|NP_220591.1| EXCINUCLEASE ABC SUBUNIT B (uvrB) [... 41 0.30
gi|52549588|gb|AAU83437.1| restriction enzymes type I helicase [... 41 0.30
gi|51708293|ref|XP_485285.1| PREDICTED: similar to myomegalin [M... 41 0.30
gi|24371966|ref|NP_716008.1| helicase [Shewanella oneidensis MR-... 41 0.40
gi|23613764|ref|NP_704785.1| hypothetical protein [Plasmodium fa... 41 0.40
gi|42525018|ref|NP_970398.1| putative ATP-dependent helicase [Bd... 41 0.40
gi|57652386|ref|YP_187456.1| LPXTG cell wall surface anchor fami... 41 0.40
gi|23480374|gb|EAA16951.1| DNA double-strand break repair rad50 ... 41 0.40
gi|28897988|ref|NP_797593.1| helicase-related protein [Vibrio pa... 40 0.52
gi|48697454|ref|YP_024839.1| Pas53 [Actinoplanes phage phiAsp2] ... 40 0.52
gi|58337450|ref|YP_194035.1| ATP-dependent exonuclease subunit A... 40 0.52
gi|56524679|emb|CAH78831.1| para-aminobenzoic acid synthetase, p... 40 0.52
gi|56518468|emb|CAH84443.1| hypothetical protein PC301043.00.0 [... 40 0.52
gi|56500654|emb|CAI00497.1| conserved hypothetical protein [Plas... 40 0.52
gi|20090965|ref|NP_617040.1| type I site-specific deoxyribonucle... 40 0.68
gi|45595597|gb|AAH67323.1| Hypothetical protein MGC76186 [Xenopu... 40 0.68
gi|23508409|ref|NP_701078.1| hypothetical protein PF11_0218 [Pla... 40 0.89
gi|46431492|gb|EAK91046.1| hypothetical protein CaO19.4715 [Cand... 40 0.89
gi|21227763|ref|NP_633685.1| type I restriction-modification sys... 40 0.89
gi|41720060|ref|ZP_00148899.1| COG4096: Type I site-specific res... 40 0.89
gi|39583004|emb|CAE71783.1| Hypothetical protein CBG18786 [Caeno... 40 0.89
gi|23482734|gb|EAA18628.1| ubiquitin-activating enzyme e1 1 [Pla... 40 0.89
>gi|21229078|ref|NP_635000.1| type I restriction-modification system
restriction subunit [Methanosarcina mazei Go1]
gb|AAM32672.1| type I restriction-modification system restriction subunit
[Methanosarcina mazei Goe1]
Length = 997
Score = 198 bits (504), Expect = 1e-48
Identities = 149/479 (31%), Positives = 233/479 (48%), Gaps = 56/479 (11%)
Query: 659 YLIQHAAGSGKSHTIASLITNLYRLLEDGKLKYDLILVINDKRHLDYQLGSIITQFLKDN 718
YL+QH+AGSGKS++IA L L L +D K +D I+VI D+R LD Q+ I QF +
Sbjct: 316 YLVQHSAGSGKSNSIAWLAHQLISLKKDDKEIFDSIIVITDRRVLDKQIRDTIKQFAQVG 375
Query: 719 DLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNKYKSIAIISDDIR 778
+++ H L K + K +++IST+QKF ++D G +H K+ AII D+
Sbjct: 376 --STVGHAERSGDLRKFIESGK-KIIISTVQKFPFILDEIGNEHRGRKF---AIIIDEAH 429
Query: 779 SMTN-----TFSSILNGETREKN--------------------NITYFCFTSTPKPKALE 813
S S L+ +K+ N +YF FT+TPK K LE
Sbjct: 430 SSQGGRTAAAMSEALSDSKDQKDPEDTINDALQKRMEARKMLPNASYFAFTATPKNKTLE 489
Query: 814 LFGDTRGN----LRVPFHTYSIEKALQDKIVMNCIDHYTTVSILTKVSNDKTSDTFFNDE 869
LFG+ + PFH Y++++A+Q+ +++ + +YT V+ K+ SD F D
Sbjct: 490 LFGEPYKDGDKIKHRPFHNYTMKQAIQEGFILDVLRYYTPVNSYYKLIKTVESDPEF-DT 548
Query: 870 NKSSYHILKHPNNDKKIIQEKSSYIIKHFLKLREQINNDEFNCRAMLVTNSREQILLYKQ 929
K+ + K+ + I+ K+ I+ HF + +N RAM+VTN E+ + Y
Sbjct: 549 KKAKKKLRKYVESHDYAIRLKAEIIVDHFQEQVIALNKIGGQARAMVVTNGIERAIQYYH 608
Query: 930 TLESLVKSLPKNQKFDIIASFAKFSLKKKEKAEYDEKINGSYAEYFSKRNGISEILRNDK 989
+ + L N + I +F+ + EY G + NG DK
Sbjct: 609 AIRDYLLEL--NSPYKAIVAFSG-------EHEY-----GGVKVTEATLNGFPSSQIEDK 654
Query: 990 --KHRVQLIIVADKLSSGFDEPSLAVMYVDRALKGASAVQTIGRLSRVSKGKNACYIVDF 1047
+ + +I ADK +G+DEP L MYVD+ L G AVQT+ RL+R K+ +++DF
Sbjct: 655 IEEEPYRFLICADKFQTGYDEPLLHTMYVDKVLSGIKAVQTLSRLNRAHPKKHDVFVLDF 714
Query: 1048 VNTRREISDAFGQYWRETCLKGETRKTVLELKLNRVLGKLSAIEPLANGRLEESVEYIL 1106
+N I DAF Y+R T L ET KL+ + L + + + ++E+ VE L
Sbjct: 715 MNDTDTIQDAFSDYYRTTVLSDETDPN----KLHDLKSDLDSYQAYSPEQIEQFVELYL 769
>gi|57506070|ref|ZP_00371993.1| probable type I restriction enzyme
HsdR VC1765 [Campylobacter upsaliensis RM3195]
gb|EAL52469.1| probable type I restriction enzyme HsdR VC1765 [Campylobacter
upsaliensis RM3195]
Length = 980
Score = 192 bits (488), Expect = 8e-47
Identities = 144/453 (31%), Positives = 244/453 (53%), Gaps = 65/453 (14%)
Query: 657 KNYLIQHAAGSGKSHTIASLITNLYRL--LEDGKLK--YDLILVINDKRHLDYQLGSIIT 712
+ YLIQH+AGSGKS++IA L NL L +E+ K K +D ILV+ D++ LD Q+ +
Sbjct: 292 QRYLIQHSAGSGKSNSIAWLAHNLASLHRVENHKEKKIFDSILVVTDRKVLDRQIQENVK 351
Query: 713 QFLKDNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNKYKSIAI 772
F ++ +L + L K K +++++T+QKF + D H+ NK + AI
Sbjct: 352 SFTENRNLVEAITEGSKQL--KAALKEGKKIIVTTIQKFPYIADE--ITHLQNK--TFAI 405
Query: 773 ISDDIRS---------MTNTFSSILNGETRE----------------KNNITYFCFTSTP 807
I D+ S M S+ + ET E + N +YF FT+TP
Sbjct: 406 IIDEAHSSQSGKNAEEMGKAISNKDDKETSEMDLEEELIKIIENKKFQKNASYFAFTATP 465
Query: 808 KPKALELFG---DTRGNLR-VPFHTYSIEKALQDKIVMNCIDHYTTVSILTKVSNDKTSD 863
KPK LE+FG + G + +PFH YS+++A+++ +++ + Y T + K+ + +
Sbjct: 466 KPKTLEMFGNPCEINGEKKFIPFHLYSMKQAIEEGFILDVLKGYITYASYYKIVSKNDNR 525
Query: 864 TFFNDENKSSYHILKHPNNDKKIIQEKSSYIIKHFLK-LREQINNDEFNCRAMLVTNSRE 922
+ D+ K++ + + N + I++K++ +I+HF + + ++I +AM+VT+SRE
Sbjct: 526 EY--DKKKANTKLKAYVTNHPETIEKKATIMIEHFFQNIYKKIGE---KAKAMIVTSSRE 580
Query: 923 QILLYKQTLESLVKSLPKN-QKFDIIASFAKFSLKKKEKAEYDEKING-SYAEYFSKRNG 980
+ Y + K L +N Q++ + +F+ D++I+G +Y+E NG
Sbjct: 581 NAVKYYLFFK---KYLQENYQQYQALVAFSG-----------DKEIDGKNYSEV--GLNG 624
Query: 981 ISEILRND--KKHRVQLIIVADKLSSGFDEPSLAVMYVDRALKGASAVQTIGRLSRVSKG 1038
SE + D KK + +IVA K +GFDEP L MYVD+ L+G +AVQT+ RL+R+ +
Sbjct: 625 FSEAMLKDEFKKDNYRFLIVAQKYQTGFDEPLLHTMYVDKRLEGINAVQTLSRLNRICQN 684
Query: 1039 KNACYIVDFVNTRREISDAFGQYWRETCLKGET 1071
K ++DF NT EI ++F ++ +T LK T
Sbjct: 685 KEDTCVLDFENTHEEIRESFSTFYGQTYLKEPT 717
>gi|48895667|ref|ZP_00328651.1| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Trichodesmium erythraeum IMS101]
Length = 991
Score = 191 bits (485), Expect = 2e-46
Identities = 137/436 (31%), Positives = 227/436 (51%), Gaps = 39/436 (8%)
Query: 659 YLIQHAAGSGKSHTIASLITNLYRL--LEDGKLKYDLILVINDKRHLDYQLGSIITQFLK 716
YLIQH+AGSGKS++I L L L + + + +D +LV+ D++ LD Q+ I QF +
Sbjct: 309 YLIQHSAGSGKSNSITWLSHQLVELKNITEKENIFDSVLVVTDRKILDKQIRENIQQFAQ 368
Query: 717 DNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVI------DTHGFD------HIS 764
++ + + N+ L K + K +++I+T+QKF V+ H F H S
Sbjct: 369 EDKVVEATK-NSKKL--KSALENKRKIIITTVQKFPYVVKEIQSLSDHKFAIIIDEAHSS 425
Query: 765 NKYKSIAIISDDIRSMTN-----TFSSILNGETREK--NNITYFCFTSTPKPKALELFG- 816
KS A +S+ + + T I+ +K N Y+ FT+TPK K LELFG
Sbjct: 426 QTGKSAASMSESLSKKDSEVEETTEDKIIRIIESQKLCPNANYYAFTATPKNKTLELFGV 485
Query: 817 -DTRGNLRVPFHTYSIEKALQDKIVMNCIDHYTTVSILTKVSNDKTSDTFFNDENKSSYH 875
+ PFH+YS+++A+++ ++N + HYTT ++ D F D ++
Sbjct: 486 KNPEDGKFYPFHSYSMKQAIEEGFILNVLQHYTTYKTYCRLEKKVIDDPEF-DSKQAKKK 544
Query: 876 ILKHPNNDKKIIQEKSSYIIKHFLKLREQINNDEFNCRAMLVTNSREQILLYKQTLESLV 935
+ ++ D++ I++KS +I+HFL +AM+V+NS + + YK+ + +
Sbjct: 545 LKQYVEEDQESIRKKSEVMIEHFLSKVIAQGKINGKAKAMVVSNSIKSAIYYKKAFDKYL 604
Query: 936 KSLPKNQKFDIIASFAKFSLKKKEKAEYDEKINGSYAEYFSKRNGISEILRNDKKHRVQL 995
+ K + I +F+ S + K E + +NG + +++ ND K+R
Sbjct: 605 RE--KKSDYQTIVAFSG-SKEIDGKKENESSMNGFSSSKITEKF-------NDSKYR--F 652
Query: 996 IIVADKLSSGFDEPSLAVMYVDRALKGASAVQTIGRLSRVSKGKNACYIVDFVNTRREIS 1055
+IVA+K +GFDEP L MYVD+ L AVQT+ RL+R +GK +++DFVN+ EI
Sbjct: 653 LIVANKYQTGFDEPLLHTMYVDKVLSDVKAVQTLSRLNRSCEGKTDTFVLDFVNSADEIQ 712
Query: 1056 DAFGQYWRETCLKGET 1071
AF Y++ T L ET
Sbjct: 713 RAFEPYYKTTILSEET 728
>gi|38505824|ref|NP_942394.1| type I site-specific deoxyribonuclease
chain R [Synechocystis sp. PCC 6803]
dbj|BAD02057.1| type I site-specific deoxyribonuclease chain R [Synechocystis sp. PCC
6803]
Length = 989
Score = 189 bits (479), Expect = 9e-46
Identities = 137/454 (30%), Positives = 229/454 (50%), Gaps = 63/454 (13%)
Query: 657 KNYLIQHAAGSGKSHTIASLITNLYRLLEDGKLKYDLILVINDKRHLDYQLGSIITQFLK 716
K YLIQH+AGSGKS++IA L L L +DGK +D I+V+ D++ LD Q+ + I QF +
Sbjct: 296 KRYLIQHSAGSGKSNSIAWLAHQLVGLEQDGKALFDSIIVVTDRQVLDRQIRNTIKQFAQ 355
Query: 717 DNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNKYKSIAIISDD 776
+ ++ H L + + K +V+I+T+QKF +++ G +H +K+ AI+ D+
Sbjct: 356 VS--ATVGHAERSGDLRQFIKDGK-KVIITTVQKFPFILNEIGDEHRQSKF---AIVIDE 409
Query: 777 IRSM-----TNTFSSILNG------------ETREKN------------NITYFCFTSTP 807
S T + +L G ET E N +YF FT+TP
Sbjct: 410 AHSSQGGKTTAAMNRVLEGTASYNVANEEEEETTEDKINRILEGRKMVTNASYFAFTATP 469
Query: 808 KPKALELFGDTR----GNLR-VPFHTYSIEKALQDKIVMNCIDHYTTVSILTKVSNDKTS 862
K K LE+FG G ++ PFH+Y++++A+Q+ +++ + YT V +++
Sbjct: 470 KNKTLEIFGQPAPQPDGTVKHYPFHSYTMKQAIQEGFILDVLKSYTPVESYYRLAKTVED 529
Query: 863 DTFFNDENKSSYHILKHPNNDKKIIQEKSSYIIKHFLKLREQINNDEFN--CRAMLVTNS 920
D F D K+ + ++ + + I+EK+ ++ HF + IN+ + RAM++TN
Sbjct: 530 DPLF-DAKKAQKKLRRYVESHQHAIREKTEIMVDHFHT--QVINHGKIGGQARAMVITNG 586
Query: 921 REQILLYKQTLESLVKSLPKNQKFDIIASFAKFSLKKKEKAEYD---EKINGSYAEYFSK 977
Q + Y + ++ + + I +F+ EYD +K+ + F
Sbjct: 587 IGQAIQYFYAFKDYLRE--RKSPYQAIVAFS---------GEYDYGGQKVTEATLNGFPS 635
Query: 978 RNGISEILRNDKKHRVQLIIVADKLSSGFDEPSLAVMYVDRALKGASAVQTIGRLSRVSK 1037
S+I ++ + +IVADK +G+D+P L MYVD+AL G AVQT+ RL+R
Sbjct: 636 ----SQITDKIEEDPYRFLIVADKYQTGYDQPLLHTMYVDKALSGIKAVQTLSRLNRAHP 691
Query: 1038 GKNACYIVDFVNTRREISDAFGQYWRETCLKGET 1071
K +++DF N I +F Y+R T L ET
Sbjct: 692 QKYDTFVLDFYNDSGTIQSSFDPYYRTTILSNET 725
>gi|50086398|ref|YP_047908.1| putative type I restriction-modification
system (HsdR) [Acinetobacter sp. ADP1]
emb|CAG70086.1| putative type I restriction-modification system (HsdR) [Acinetobacter
sp. ADP1]
Length = 1020
Score = 175 bits (443), Expect = 1e-41
Identities = 141/476 (29%), Positives = 228/476 (47%), Gaps = 76/476 (15%)
Query: 649 VIKPVKNSK------NYLIQHAAGSGKSHTIASLITNLYRLLE-DGKLKYDLILVINDKR 701
V K K+SK NYLIQH+AGSGKS+TIA L L + D K ++ I+VI D+
Sbjct: 290 VRKLTKHSKANGSGHNYLIQHSAGSGKSNTIAWLAHQLASMHNADDKKIFNSIIVITDRI 349
Query: 702 HLDYQLGSIITQFLKDNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFD 761
LD QL I QF + + NT+ L + + ++I+T+QKF ++ +
Sbjct: 350 VLDRQLQETIAQFEHKDGVVQKIDENTLQLTNALASNVP--IIITTIQKFPYIMQSIRTQ 407
Query: 762 -------HISNKYKSIAIISDDIRS----------------------------------- 779
+S + K+ A+I D+ S
Sbjct: 408 AKKGIKVDLSTEGKNFAVIVDEAHSSQSGETAMELRKILNKDGIESAIAQEFLDDGDEDE 467
Query: 780 --MTNTFSSILNGETREKN---NITYFCFTSTPKPKALELFGDTRGNLRVPFHTYSIEKA 834
+T+ L E +++ N+++F FT+TPK K L F + N PFH YS+++A
Sbjct: 468 SELTDDVKKHLFAEASKRSRQPNLSFFAFTATPKWKTLACFDEAGDNGEAPFHHYSMKQA 527
Query: 835 LQDKIVMNCIDHYTTVSILTKVSNDKTSDTFFNDENKSSYHILKHPNNDKKIIQEKSSYI 894
+Q+ +++ + +YTT K+ +D +NK+ + + + +I +K I
Sbjct: 528 IQEGFILDVLANYTTYGQYYKLIKIADNDPELA-KNKTKALMARFVSMHPSVIAQKVEII 586
Query: 895 IKHFLKLREQINNDEFNCRAMLVTNSREQILLYKQTLESLVKSLPKNQKFDIIASFAKFS 954
++HF + ++ +AM+VTNSREQ + YK + +K +K+ I S FS
Sbjct: 587 VEHFRTVT--MHRIGGRAKAMVVTNSREQAVRYKLAFDEYIKE----KKYTGIKSLVAFS 640
Query: 955 LKKK-EKAEYDEKINGSYAEYFSKRNGISEILRNDK--KHRVQLIIVADKLSSGFDEPSL 1011
K + + EY E K NG E D+ Q+++VA+K +GFD+P L
Sbjct: 641 GKLEVDGTEYTEP----------KMNGFKETELPDQFDTDDYQVLLVAEKYQTGFDQPLL 690
Query: 1012 AVMYVDRALKGASAVQTIGRLSRVSKGKNACYIVDFVNTRREISDAFGQYWRETCL 1067
M+VD+ L G AVQT+ RL+R + GK +++DFVNT +I AF ++ +T L
Sbjct: 691 HTMFVDKKLSGIQAVQTLSRLNRCAYGKEDTFVLDFVNTLEDIYKAFKPFYEQTKL 746
>gi|53800416|ref|ZP_00359771.1| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Xylella fastidiosa Dixon]
Length = 1023
Score = 173 bits (438), Expect = 5e-41
Identities = 138/454 (30%), Positives = 217/454 (47%), Gaps = 59/454 (12%)
Query: 657 KNYLIQHAAGSGKSHTIASLITNLYRLLEDG---KLKYDLILVINDKRHLDYQLGSIITQ 713
K YLIQH+AGSGKS+TIA L L L ++++D I+VI D+R LD Q+ II
Sbjct: 316 KRYLIQHSAGSGKSNTIAWLAHQLVELRRKDDPLRVQFDSIIVITDRRTLDKQIADIIKG 375
Query: 714 FLKDNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNKYKSIAII 773
+ D+ H + L + L + K +++++T+QKF ++D G K A++
Sbjct: 376 Y--DHVAAIFGHSDNAQELREYLRRGK-KIIVTTVQKFPFILDELG----DLSGKRFALL 428
Query: 774 SDDIRSM-----TNTFSSILNGETREKN-------------------------NITYFCF 803
D+ S T L G+ E+ N +YF F
Sbjct: 429 IDEAHSSQGGKTTARMHEALGGKVAEEEFEEDSTQDAVNAEIERRIASRKLLANASYFAF 488
Query: 804 TSTPKPKALELFGD-TRGNLRVPFH-----TYSIEKALQDKIVMNCIDHYTTVSILTKVS 857
T+TPK K LELFG+ T +V F TY+ ++A+Q+K +++ ++ YT +V+
Sbjct: 489 TATPKNKTLELFGERTLVGDKVQFRSPEELTYTTKQAIQEKFILDVVEKYTPYDSFYQVA 548
Query: 858 NDKTSDTFFNDENKSSYHILKHPNNDKKIIQEKSSYIIKHFLKLREQINNDEFNCRAMLV 917
D F D+ K+ I + + K I+ K+ ++ HF+ RAM+V
Sbjct: 549 KTVADDPEF-DKVKALKKIRLYVESHDKAIRRKAEIMVDHFIACVAGKQIIGGQARAMIV 607
Query: 918 TNSREQILLYKQTLESLVKSLPKNQKFDIIASFAKFSLKKKEKAEYDEKINGSYAEYFSK 977
N + + Y + + + + K I+A F + ++K E D +NG + SK
Sbjct: 608 CNGIARAIDYWREVSDYLTQIKSPYKA-IVAYSGSFEIGGQKKTEAD--LNG----FPSK 660
Query: 978 RNGISEILRNDKKHRVQLIIVADKLSSGFDEPSLAVMYVDRALKGASAVQTIGRLSRVSK 1037
+ I N KK + +IVA+K +GFDEP L MYVD+ L G AVQT+ RL+R
Sbjct: 661 K-----IPENLKKDPYRFLIVANKFVTGFDEPLLHTMYVDKPLAGVLAVQTLSRLNRAHP 715
Query: 1038 GKNACYIVDFVNTRREISDAFGQYWRETCLKGET 1071
K +++DF + + AF Y+R T GET
Sbjct: 716 QKRDTFVLDFADNAEAVKAAFQDYYRATIQMGET 749
>gi|48839712|ref|ZP_00296642.1| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Methanosarcina barkeri str.
fusaro]
Length = 965
Score = 169 bits (429), Expect = 6e-40
Identities = 131/447 (29%), Positives = 216/447 (48%), Gaps = 49/447 (10%)
Query: 658 NYLIQHAAGSGKSHTIASLITNLYRLLE-DGKLKYDLILVINDKRHLDYQLGSIITQFLK 716
NYLIQH+AGSGKS+TIA L L L + + K +D I+V+ D+R LD QL ITQF
Sbjct: 269 NYLIQHSAGSGKSNTIAWLCLQLCGLHDTENKRVFDSIIVVTDRRVLDRQLQETITQFEH 328
Query: 717 DNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDT------------------- 757
+ + L L + K ++I T+Q F ++
Sbjct: 329 VKGTVATIKKDKAKSLTAALQEGKD-IIICTLQTFPFAVNAISEMSGKHFAVVVDEAHSS 387
Query: 758 ---HGFDHISNKYKSIAIISDDIRSMTNTFSSILN----GETREKN---NITYFCFTSTP 807
G D + S + SD+ ++N E + K N+++F FT+TP
Sbjct: 388 QSGEGADSVKKILGSADLESDEQEEEPEDDEDLVNQRVEAELKHKGRLPNVSFFAFTATP 447
Query: 808 KPKALELFGDTRGNLRV-PFHTYSIEKALQDKIVMNCIDHYTTVSILTKVSNDKTSDTFF 866
K K LELFG + + PF Y++++A+++K +++ +++YTT + + D +
Sbjct: 448 KTKTLELFGTQQPDGSYEPFSLYTMKQAIEEKFILDVLENYTTFKVYFNLLKTIEDDPRY 507
Query: 867 NDENKSSYHILK-HPNNDKKIIQEKSSYIIKHFLKLREQI-NNDEFNCRAMLVTNSREQI 924
+ K H+LK + +N I+ K+ I+++F REQ+ + + +AMLVT SR
Sbjct: 508 S--KKKGMHLLKAYVDNHDHSIRTKTVIIVENF---REQVMHRIDGQAKAMLVTKSRASA 562
Query: 925 LLYKQTLESLVKSLPKNQKFDIIASFAKFSLKKKEKAEYDEKINGSYAEYFSKRNGISEI 984
+ YK + +K+ F + +F+ + E+ E I ++E S+
Sbjct: 563 VKYKLAFDRYIKT--HEYPFKALVAFSGTVQDGETGREFTEAIMNGFSE--------SQT 612
Query: 985 LRNDKKHRVQLIIVADKLSSGFDEPSLAVMYVDRALKGASAVQTIGRLSRVSKGKNACYI 1044
K+ +++IVA+K +GFD+P L MYVD+ L G +AVQT+ RL+R K +
Sbjct: 613 AEVFKREEYRILIVANKFQTGFDQPLLYAMYVDKRLGGVNAVQTLSRLNRKYPDKEDTMV 672
Query: 1045 VDFVNTRREISDAFGQYWRETCLKGET 1071
+DF N I +F Y+ +T L T
Sbjct: 673 LDFENEADLIQRSFQPYYEKTLLTEAT 699
>gi|52549654|gb|AAU83503.1| type I site-specific
restriction-modification system R subunit and related
helicases [uncultured archaeon GZfos29E12]
Length = 889
Score = 169 bits (427), Expect = 1e-39
Identities = 133/459 (28%), Positives = 216/459 (46%), Gaps = 57/459 (12%)
Query: 649 VIKPVKNSKNYLIQHAAGSGKSHTIASLITNLYRLLE--DGKLKYDLILVINDKRHLDYQ 706
++ K KNYLI+H+ GSGK+ TIA L L + D ++ YD+++V++D+R +D Q
Sbjct: 188 LLADAKPGKNYLIEHSNGSGKTKTIAWLAHGLINKFDSLDNRV-YDMVIVVSDRRVIDTQ 246
Query: 707 LGSIITQFLK-DNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISN 765
L + K + I T L K L + + +V++T+QKF +++ D
Sbjct: 247 LQNQAKSIEKVKGTVEVIDKKKTSDDLRKAL-ETGSNIVVTTLQKFPYILEEVK-DLPKR 304
Query: 766 KYKSIAIISDDIRS-----MTNTFSSILNGETREK------------------------- 795
KY A+I D+ S M +L+ + E+
Sbjct: 305 KY---AVIIDEAHSSQTGTMARKMKQVLSTNSLEEAEALDIEEMDEVDEELLREIESYRN 361
Query: 796 -NNITYFCFTSTPKPKALELFG--DTRGNLRVPFHTYSIEKALQDKIVMNCIDHYTTVSI 852
NI++F FT+TPK K LE+FG D G+ PFHTY++++A+++ + + + +Y +
Sbjct: 362 LKNISFFAFTATPKNKTLEMFGMLDEYGHY-YPFHTYTMKQAIEEGFIFDVLKNYLAYAT 420
Query: 853 LTKVSNDKTSDTFFNDENKSSYHILKHPNNDKKIIQEKSSYIIKHFLKLREQINNDEFNC 912
K+ D + DE K+ + I K+ ++ HF+ IN
Sbjct: 421 YFKIVKKIQDDPEY-DEKKAKRLLRTFVEKHPVAIARKTDIMLNHFMN--STINKINGKA 477
Query: 913 RAMLVTNSREQILLYKQTLESLVKSLPKNQKFDIIASFAKFSLKKKEKAEYDEKINGSYA 972
+AM+VT SR +LYK+ + L+K N + +F + K ++ EY E
Sbjct: 478 KAMVVTRSRLHAVLYKKAFDKLIKE--NNYPIKTLVAFT--GVVKHDEQEYTENSRNDLP 533
Query: 973 EYFSKRNGISEILRNDKKHRVQLIIVADKLSSGFDEPSLAVMYVDRALKGASAVQTIGRL 1032
S R E + +++IVA+K +GFD+P L MYVD+ L G +AVQT+ RL
Sbjct: 534 SQKSIRKAFEE-------DQYKILIVANKFQTGFDQPLLHTMYVDKMLNGITAVQTLCRL 586
Query: 1033 SRVSKGKNACYIVDFVNTRREISDAFGQYWRETCLKGET 1071
+R+ K I+DF N I AF Y+ T L+ T
Sbjct: 587 NRIHTNKKDTLILDFANKTEVIQKAFQPYYETTFLEEAT 625
>gi|49243380|emb|CAG41797.1| putative type I restriction enzyme
protein [Staphylococcus aureus subsp. aureus MSSA476]
ref|YP_042158.1| putative type I restriction enzyme protein [Staphylococcus aureus
subsp. aureus MSSA476]
Length = 1012
Score = 169 bits (427), Expect = 1e-39
Identities = 130/455 (28%), Positives = 224/455 (48%), Gaps = 56/455 (12%)
Query: 657 KNYLIQHAAGSGKSHTIASLITNLYRLL--EDGKLKYDLILVINDKRHLDYQLGSIITQF 714
KNYLIQH+AGSGKS++IA L +L L ED + Y ++V+ D+ LD QL + + F
Sbjct: 297 KNYLIQHSAGSGKSNSIAWLAYHLASLHSNEDQPI-YSSVIVVTDRTVLDRQLQNTLMSF 355
Query: 715 LKDNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNKY-KSIAII 773
N + K + +++I+T+QKF + +D I N +S AI+
Sbjct: 356 EHTVGQVETIGDNKTSQDLKTAINDQKKIIITTLQKFPVI-----YDEIDNTAGRSFAIL 410
Query: 774 SDDIRS-MTNTFSSILNGETREK-----------------------------------NN 797
D+ S T + + L +K +N
Sbjct: 411 VDEAHSSQTGSSAQKLKHALADKEASLKEYQEFEESVEDQSLDDQDQIVQTLLSQGQHDN 470
Query: 798 ITYFCFTSTPKPKALELFGDTRGNLRV-PFHTYSIEKALQDKIVMNCIDHYTTVSILTKV 856
+++F FT+TPK K +E+FG + + PFH YS+ +A+++ ++N + +Y T + K+
Sbjct: 471 LSFFAFTATPKEKTIEMFGTKQADGSYHPFHIYSMRQAIEEGFILNVLQNYMTYNTSYKI 530
Query: 857 SNDKTSDTFFNDENKSSYHILKHPNNDKKIIQEKSSYIIKHFLKLREQINNDEFNCRAML 916
+ D + ++ I K+ + ++++K+ +I+ F + ++ +AM+
Sbjct: 531 AKSIEEDPEL-PKTEAVRAIAKYQSLHPWVLRQKAEIMIEQFRSVTQKAVQGRG--KAMI 587
Query: 917 VTNSREQILLYKQTLESLVKSLPKNQKFDIIASFAKFSLKKKEKAEYDE-KINGSYAEYF 975
VT SR + Y Q + +K D++ +F+ + + EY E K+N +++
Sbjct: 588 VTASRLHAVRYMQEFKKYIKEKGYTD-MDVLVAFS--GTVEDDGIEYTEPKMNLTHSGER 644
Query: 976 SKRNGISEILRNDKKHRVQLIIVADKLSSGFDEPSLAVMYVDRALKGASAVQTIGRLSRV 1035
+ N + E ++ L+IVA+K +GFDEP L M+VD+ L+G AVQT+ RL+R
Sbjct: 645 IQENQLKEAFHSED---FNLLIVAEKYQTGFDEPLLHTMFVDKRLRGVKAVQTLSRLNRT 701
Query: 1036 SKGKNACYIVDFVNTRREISDAFGQYWRETCLKGE 1070
GK +I+DFVNT EI +AF ++ T LK E
Sbjct: 702 MPGKTDTFILDFVNTAEEIYEAFQPFYEATSLKEE 736
>gi|52426226|ref|YP_089363.1| HsdR protein [Mannheimia
succiniciproducens MBEL55E]
gb|AAU38778.1| HsdR protein [Mannheimia succiniciproducens MBEL55E]
Length = 1020
Score = 168 bits (426), Expect = 1e-39
Identities = 130/459 (28%), Positives = 224/459 (48%), Gaps = 66/459 (14%)
Query: 657 KNYLIQHAAGSGKSHTIASLITNLYRLLE-DGKLKYDLILVINDKRHLDYQLGSIITQFL 715
+NYLIQH+AGSGKS+TIA L L L D + ++ ++V+ D+ LD QL + I+QF
Sbjct: 299 RNYLIQHSAGSGKSNTIAWLAHQLSSLHNRDDQKIFNSVIVVTDRVVLDRQLQATISQFE 358
Query: 716 -KDNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVI------DTHGFD-HISNKY 767
KD + I H N+ L I + T ++I+T+QKF V+ G + IS +
Sbjct: 359 HKDGVVQKIEH-NSQQLAVAIASD--TPIIITTIQKFPFVMAALARKQESGINVAISTEG 415
Query: 768 KSIAIISDDIRSMTN-----TFSSILN--------------------------------- 789
K A+I D+ S + +LN
Sbjct: 416 KQFAVIVDEAHSSQSGEAAMELRKVLNKDGIEAAVMAEFLDDDDDETGLSDEAKKQLFIE 475
Query: 790 -GETREKNNITYFCFTSTPKPKALELFGDTRGNLRVPFHTYSIEKALQDKIVMNCIDHYT 848
+ + + N+++F FT+TPK K LF + + PFH Y++++A+++ +++ +++Y
Sbjct: 476 AAKRQRQPNLSFFAFTATPKWKTKALFDEPGADGNTPFHHYTMKQAIEEGFILDVLENYA 535
Query: 849 TVSILTKVSNDKTSDTFFNDENKSSYHILKHPNNDKKIIQEKSSYIIKHFLKLREQINND 908
T K+ +D + ++K+ +++ N +I +K I++HF ++
Sbjct: 536 TWKQYFKLLKISENDKELS-KSKAKKEMMRFVNLHPSVIAQKVEIIVEHFRTTT--MHKI 592
Query: 909 EFNCRAMLVTNSREQILLYKQTLESLVKSLPKNQKFDIIASFAKFSLKKKEKAEYDEKIN 968
+AM+VTN RE + YK + +K ++A +LK+ + EY E +
Sbjct: 593 GGRAKAMVVTNGREHAVRYKLAFDEYIKEKGYTGIKSLVAFSGGITLKEAPEKEYTEAL- 651
Query: 969 GSYAEYFSKRNGISEILRNDK--KHRVQLIIVADKLSSGFDEPSLAVMYVDRALKGASAV 1026
NGI E+ ++ Q+++VA+K +GFD+P L M+VD+ L G AV
Sbjct: 652 ---------MNGIREVDLPEQFASEHYQVLLVAEKYQTGFDQPLLHTMFVDKKLSGIQAV 702
Query: 1027 QTIGRLSRVSKGKNACYIVDFVNTRREISDAFGQYWRET 1065
QT+ RL+R +KGK +++DFVN +I AF ++ T
Sbjct: 703 QTLSRLNRCAKGKTDTFVLDFVNQPEDIYKAFKPFYEVT 741
>gi|9948809|gb|AAG06120.1| hypothetical protein PA2732 [Pseudomonas
aeruginosa PAO1]
pir||C83304 hypothetical protein PA2732 [imported] - Pseudomonas aeruginosa
(strain PAO1)
ref|NP_251422.1| hypothetical protein PA2732 [Pseudomonas aeruginosa PAO1]
Length = 1146
Score = 168 bits (426), Expect = 1e-39
Identities = 134/454 (29%), Positives = 223/454 (48%), Gaps = 59/454 (12%)
Query: 657 KNYLIQHAAGSGKSHTIASLITNLYRL--LEDGKL-KYDLILVINDKRHLDYQLGSIITQ 713
K YLIQH+AGSGKS+TIA L L L + D + ++D I+VI D+R LD Q+ I
Sbjct: 319 KRYLIQHSAGSGKSNTIAWLAHQLVELRSVADPLMPQFDSIIVITDRRALDTQIARTIKG 378
Query: 714 FLKDNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNKYKSIAII 773
+ D+ + H + L L + + +++++T+QKF +++ G ++ A++
Sbjct: 379 Y--DHVASIFGHSDNAQELRDYLRRGR-KIIVTTVQKFPFILEEIG----DLSGRTFALL 431
Query: 774 SDDIRSM-----TNTFSSILNGETREK-------------------------NNITYFCF 803
D+ S T L+G+T E+ +N +YF F
Sbjct: 432 IDEAHSSQGGKTTARMHEALSGKTDEEAFEEDATQDAVNTEIEKRIQSRRMLSNASYFAF 491
Query: 804 TSTPKPKALELFG-----DTRGNLRVPFH-TYSIEKALQDKIVMNCIDHYTTVSILTKVS 857
T+TPK + LELFG D + R P TY+ ++A+Q+ +++ I HYTT+ +V+
Sbjct: 492 TATPKNRTLELFGEKTVVDDKVEFRSPEELTYTTKQAIQEGFILDVIAHYTTLDSFYQVA 551
Query: 858 NDKTSDTFFNDENKSSYHILKHPNNDKKIIQEKSSYIIKHFLKLREQINNDEFNCRAMLV 917
+D F D+ ++ I + + K I+ K+ ++ HF+ RAM+V
Sbjct: 552 KTVENDPDF-DKARALKKIRHYVESHDKAIRRKAEIMVDHFVAQVMGAKKIGGKARAMIV 610
Query: 918 TNSREQILLYKQTLESLVKSLPKNQKFDIIASFAKFSLKKKEKAEYDEKINGSYAEYFSK 977
N + + Y + + ++ + K I+A +F + ++K E D ++ SK
Sbjct: 611 CNGIARAIDYWREVSDYLEQIKSPYKA-IVAYSGEFEIGGEKKTEADLN------DFPSK 663
Query: 978 RNGISEILRNDKKHRVQLIIVADKLSSGFDEPSLAVMYVDRALKGASAVQTIGRLSRVSK 1037
I + LR D + +IVA+K +GFDEP L MYVD+ L G AVQT+ RL+R
Sbjct: 664 E--IPDRLRQDP---YRFLIVANKFVTGFDEPLLHTMYVDKKLAGVQAVQTLSRLNRAHP 718
Query: 1038 GKNACYIVDFVNTRREISDAFGQYWRETCLKGET 1071
K+ +++DF + + AF Y+R T GET
Sbjct: 719 QKHDTFVLDFADNAEAVKKAFQDYYRATIQTGET 752
>gi|15839310|ref|NP_299998.1| type I restriction-modification system
endonuclease [Xylella fastidiosa 9a5c]
gb|AAF85757.1| type I restriction-modification system endonuclease [Xylella
fastidiosa 9a5c]
pir||A82516 type I restriction-modification system endonuclease XF2721 [imported]
- Xylella fastidiosa (strain 9a5c)
Length = 1025
Score = 167 bits (424), Expect = 2e-39
Identities = 136/456 (29%), Positives = 221/456 (47%), Gaps = 63/456 (13%)
Query: 657 KNYLIQHAAGSGKSHTIASLITNLYRLL-EDGKL--KYDLILVINDKRHLDYQLGSIITQ 713
+ YLIQH+AGSGKS+TIA L L L +D + ++D I+VI D+R LD Q+ I
Sbjct: 318 RRYLIQHSAGSGKSNTIAWLAHQLVELRRKDDPMTPQFDSIIVITDRRALDTQIADTIKG 377
Query: 714 FLKDNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNKYKSIAII 773
+ D+ H + L + L + K +++++T+QKF ++D G K A++
Sbjct: 378 Y--DHVAAIFGHSDNAQELREYLRRDK-KIIVTTVQKFPFILDELG----DLSGKRFALL 430
Query: 774 SDDIRSM-----TNTFSSILNGETREKN-------------------------NITYFCF 803
D+ S T L G+ E+ N +YF F
Sbjct: 431 IDEAHSSQGGKTTARMHEALGGKVAEEEFEEDRTQDAVNAEIERRIASRKLLANASYFAF 490
Query: 804 TSTPKPKALELFGD-TRGNLRVPFH-----TYSIEKALQDKIVMNCIDHYTTVSILTKVS 857
T+TPK K LELFG+ TR +V F TY+ ++A+Q+K +++ ++ YT +V+
Sbjct: 491 TATPKNKTLELFGEKTRVGDKVQFRSPEELTYTTKQAIQEKFILDVVEKYTPYDSFYQVA 550
Query: 858 NDKTSDTFFNDENKSSYHILKHPNNDKKIIQEKSSYIIKHFLKLREQINNDEFN--CRAM 915
D F D+ K+ I + + K I+ K+ ++ HF+ E + + RAM
Sbjct: 551 KTVAEDPEF-DKVKALKKIRHYVESHDKAIRRKAEIMVDHFIA--EVVGKQKIGGQARAM 607
Query: 916 LVTNSREQILLYKQTLESLVKSLPKNQKFDIIASFAKFSLKKKEKAEYDEKINGSYAEYF 975
+V N + + Y + + + + K+ I+A F + ++K E D +NG ++
Sbjct: 608 IVCNGIARAIDYWREVSDYLTQI-KSPYRAIVAYSGSFEIGGQKKTEAD--LNGFPSK-- 662
Query: 976 SKRNGISEILRNDKKHRVQLIIVADKLSSGFDEPSLAVMYVDRALKGASAVQTIGRLSRV 1035
+I KK + +IVA+K +GFDEP L MYVD+ L G AVQT+ RL+R
Sbjct: 663 -------DIPDTLKKDPYRFLIVANKFVTGFDEPLLHTMYVDKPLAGVLAVQTLSRLNRA 715
Query: 1036 SKGKNACYIVDFVNTRREISDAFGQYWRETCLKGET 1071
K+ +++DF + + AF Y+R T GET
Sbjct: 716 HPQKHDTFVLDFADNAEAVKAAFQDYYRVTIQMGET 751
>gi|53756220|gb|AAU90511.1| type I restriction-modification system, R
subunit, putative [Methylococcus capsulatus str. Bath]
ref|YP_112808.1| type I restriction-modification system, R subunit, putative
[Methylococcus capsulatus str. Bath]
Length = 1002
Score = 166 bits (419), Expect = 8e-39
Identities = 134/452 (29%), Positives = 218/452 (47%), Gaps = 57/452 (12%)
Query: 657 KNYLIQHAAGSGKSHTIASLITNLYRL---LEDGKLKYDLILVINDKRHLDYQLGSIITQ 713
K YLIQH+AGSGKS+TIA L L L + G+ ++D ++VI D+R LD Q+ I
Sbjct: 298 KRYLIQHSAGSGKSNTIAWLAHQLVELKTAADAGQAQFDSVIVITDRRALDTQIARTIRS 357
Query: 714 FLKDNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNKYKSIAII 773
+ D+ + H + L L + K +++++T+QKF ++D G K A++
Sbjct: 358 Y--DHVASIYGHSESAEELRTFLRRGK-KIIVTTVQKFPFILDELG----DLGDKKFALL 410
Query: 774 SDDIRSM-----TNTFSSILNGETREKN-----------------------NITYFCFTS 805
D+ S T L+G+ E N +Y+ FT+
Sbjct: 411 IDEAHSSQGGKTTAKMHLALSGQAAEGGEDEEEESVEDKVNALIESRKMLANASYYAFTA 470
Query: 806 TPKPKALELFGDTRG-----NLRVPFH-TYSIEKALQDKIVMNCIDHYTTVSILTKVSND 859
TPK K LELFG+ + R P TY+ ++A+Q+ +++ I +YT VS ++
Sbjct: 471 TPKTKTLELFGERQVVGDTVQFRSPEELTYTTKQAIQEGFILDVIANYTPVSSFYHIAKT 530
Query: 860 KTSDTFFNDENKSSYHILKHPNNDKKIIQEKSSYIIKHFLKLREQINNDEFNCRAMLVTN 919
D D+ K+ I ++ + K I+ K+ ++ HF++ RAM+V N
Sbjct: 531 VEHDPEV-DKAKALKKIRRYVESHDKAIRRKAEIMVDHFIEQVIGAKKIGGKARAMIVCN 589
Query: 920 SREQILLYKQTLESLVKSLPKNQKFDIIASFAKFSLKKKEKAEYDEKINGSYAEYFSKRN 979
+ + Y + + ++ + K I+A F + +K E D +NG F ++
Sbjct: 590 GIARAIDYFREVSDYLREIKSPYKA-IVAYSGDFEVGGVKKTEAD--LNG-----FPSKD 641
Query: 980 GISEILRNDKKHRVQLIIVADKLSSGFDEPSLAVMYVDRALKGASAVQTIGRLSRVSKGK 1039
I LR D + +IVA+K +GFDEP L MYVD+ L G AVQT+ RL+R K
Sbjct: 642 -IPAKLRQDP---YRFLIVANKFVTGFDEPLLHTMYVDKPLAGVLAVQTLSRLNRAHPQK 697
Query: 1040 NACYIVDFVNTRREISDAFGQYWRETCLKGET 1071
+++DF + + AF +Y+R T +GET
Sbjct: 698 ADTFVLDFADNAEAVKAAFQEYYRATIQEGET 729
>gi|34762431|ref|ZP_00143431.1| TYPE I RESTRICTION-MODIFICATION SYSTEM
RESTRICTION SUBUNIT [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
gb|EAA24967.1| TYPE I RESTRICTION-MODIFICATION SYSTEM RESTRICTION SUBUNIT
[Fusobacterium nucleatum subsp. vincentii ATCC 49256]
Length = 980
Score = 165 bits (418), Expect = 1e-38
Identities = 133/486 (27%), Positives = 235/486 (47%), Gaps = 70/486 (14%)
Query: 657 KNYLIQHAAGSGKSHTIASL---ITNLYRLLEDGKLK-----YDLILVINDKRHLDYQLG 708
KNYLIQH+AGSGKS++I L + + R +++G + ++ ++V+ D+ +LD Q+
Sbjct: 303 KNYLIQHSAGSGKSNSITWLAYRLVEVARKVQNGDISKFEKIFNSVIVVTDRLNLDKQID 362
Query: 709 SIITQFLKDNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNKYK 768
I +F+ + + H ++ L+ +L K +++I+T+QKF +++ G + K K
Sbjct: 363 DNIRKFIDVRSV--VGHASSSTDLKNLLVNEK-KIIIATIQKFPYLLEKIGTEL---KGK 416
Query: 769 SIAIISDDIRS-----------MTNTFSSILNGET---------------REKNNITYFC 802
+ AII D+ S M + + +N + + N ++F
Sbjct: 417 NFAIIIDEAHSSQSGRAAASLNMAVSATIDINDDNDFEIEDKLNELIEARKMPENASFFA 476
Query: 803 FTSTPKPKALELFGDTRGNLRVPFHTYSIEKALQDKIVMNCIDHYTTVSILTKVSNDKTS 862
FT+TPK K L++FG+ F YS+++A+++ +++ + +YT K+
Sbjct: 477 FTATPKAKTLQMFGNV-------FDLYSMKQAIEEGFILDVLKNYTYYENFYKIKKSVED 529
Query: 863 DTFFNDENKSSYHILKHPNNDKKIIQEKSSYIIKHFLKLREQINNDEFNCRAMLVTNSRE 922
+ F D+ K+ I K+ + I+EK+ +++HFL +AM+VT S
Sbjct: 530 NPIF-DKKKAQKKIRKYVECQEFPIREKAEVMVEHFL--HNTATKIAGQAKAMVVTQSIL 586
Query: 923 QILLYKQTLESLVKSLPKNQKFDIIASFAKFSLKKKEKAEYDEKINGSYAEYFSKRNGI- 981
+ Y + ++K N ++ + +F+ +++ NG S NG
Sbjct: 587 SAIEYYHCINDMLKK--SNTGYEALIAFSG-----------EKEYNGKTVTEASL-NGFP 632
Query: 982 -SEILRNDKKHRVQLIIVADKLSSGFDEPSLAVMYVDRALKGASAVQTIGRLSRVSKGKN 1040
+E K+ + + +IVADK +G+DEP L MYVD+ L AVQT+ RL+R +K K
Sbjct: 633 DTETTTKFKETKYKFLIVADKYQTGYDEPLLHTMYVDKVLNDVKAVQTLSRLNRCTKNKI 692
Query: 1041 ACYIVDFVNTRREISDAFGQYWRETCLKGETRKTVLELKLNRVLGKLSAIEPLANGRLEE 1100
I+DF N I +AF Y++ET L GE KL +L L + ++E
Sbjct: 693 DTCIIDFANKPEHIQEAFQPYYKETKLDGEVDPN----KLFNLLSVLDSKYVYEKDEVDE 748
Query: 1101 SVEYIL 1106
VE L
Sbjct: 749 LVELFL 754
>gi|52857360|ref|ZP_00341546.1| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Xylella fastidiosa Ann-1]
Length = 1027
Score = 163 bits (413), Expect = 4e-38
Identities = 141/489 (28%), Positives = 232/489 (46%), Gaps = 71/489 (14%)
Query: 659 YLIQHAAGSGKSHTIASLITNLYRLL-EDGKL--KYDLILVINDKRHLDYQLGSIITQFL 715
YLIQH+AGSGKS+TIA L L L +D + ++D I+VI D+R LD Q+ I +
Sbjct: 318 YLIQHSAGSGKSNTIAWLAHQLVELRRKDDPMTPQFDSIIVITDRRALDTQIADTIKGY- 376
Query: 716 KDNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNKYKSIAIISD 775
D+ H + L + L + K +++++T+QKF ++D G K A++ D
Sbjct: 377 -DHVAAIFGHSDNAQELREYLRRDK-KIIVTTVQKFPFILDELG----DLSGKRFALLID 430
Query: 776 DIRS-----MTNTFSSILNGETREKN-----------------------------NITYF 801
+ S +T L G+ E+ N +YF
Sbjct: 431 EAHSSQGGKITARMHETLGGKVAEEEFEEEFEEDRTQDAVNAEIERRIASRKLLANASYF 490
Query: 802 CFTSTPKPKALELFGD-TRGNLRVPFH-----TYSIEKALQDKIVMNCIDHYTTVSILTK 855
FT+TPK K LELFG+ T +V F TY+ ++A+Q+K +++ ++ YT +
Sbjct: 491 AFTATPKNKTLELFGEKTLVGDKVQFRSPEELTYTTKQAIQEKFILDVVEKYTPYDSFYQ 550
Query: 856 VSNDKTSDTFFNDENKSSYHILKHPNNDKKIIQEKSSYIIKHFLKLREQINNDEFN--CR 913
V+ D F D+ K+ I + + K I+ K+ ++ HF+ E + + R
Sbjct: 551 VAKTVADDPEF-DKVKALKKIRLYVESHDKAIRRKAEIMVDHFIA--EVVGKQKIGGQAR 607
Query: 914 AMLVTNSREQILLYKQTLESLVKSLPKNQKFDIIASFAKFSLKKKEKAEYDEKINGSYAE 973
AM+V N + + Y + + + + K+ I+A F + ++K E D +NG ++
Sbjct: 608 AMIVCNGIARAIDYWREVSDYLTQI-KSPYRAIVAYSGSFEIGGQKKTEAD--LNGFPSK 664
Query: 974 YFSKRNGISEILRNDKKHRVQLIIVADKLSSGFDEPSLAVMYVDRALKGASAVQTIGRLS 1033
+I KK + +IVA+K +GFDEP L MYVD+ L G AVQT+ RL+
Sbjct: 665 ---------DIPDTLKKDPYRFLIVANKFVTGFDEPLLHTMYVDKPLAGVLAVQTLSRLN 715
Query: 1034 RVSKGKNACYIVDFVNTRREISDAFGQYWRETCLKGETRKTVLELKLNRVLGKLSAIEPL 1093
R K +++DF + + AF Y+R T GET KL+ + +L +
Sbjct: 716 RAHPQKRDTFVLDFADNAEAVKAAFQDYYRATIQMGETDPN----KLHDLKAELDGQQVY 771
Query: 1094 ANGRLEESV 1102
+ ++EE V
Sbjct: 772 SWSQVEEVV 780
>gi|52007207|ref|ZP_00334585.1| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Thiobacillus denitrificans ATCC
25259]
Length = 1009
Score = 161 bits (408), Expect = 2e-37
Identities = 134/454 (29%), Positives = 217/454 (47%), Gaps = 70/454 (15%)
Query: 658 NYLIQHAAGSGKSHTIASLITNLYRLLEDGKLK-YDLILVINDKRHLDYQLGSIITQFLK 716
NYL++H+AGSGKS+TI L L L + K +D ++VI D+R LD QL I QF
Sbjct: 301 NYLVEHSAGSGKSNTIGWLAHRLASLHNESDHKVFDSVIVITDRRVLDRQLQDTIYQFEH 360
Query: 717 DNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDT---------HGFDHISNKY 767
+ ++ L E + ++IST+QKF V G D I
Sbjct: 361 RQGVVQKIDEDSRQLAEALTNSVP--IIISTLQKFPFVARQLARMAEERREGADGILPTR 418
Query: 768 KSIAIISDDIRSMTNTFSS----ILNGET-REK--------------------------N 796
+ II + S + ++ +L G RE+
Sbjct: 419 RCAVIIDEAHSSQSGETATDLKEVLGGHVLREEAARYAVDEGVDNLDELYRSMAKRGRQT 478
Query: 797 NITYFCFTSTPKPKALELFG-DTRGNLRVPFHTYSIEKALQDKIVMNCIDHYTTVSILTK 855
N+++F FT+TPK K L +FG D G PFH Y++ +A+++ +M+ + +YTT + K
Sbjct: 479 NLSFFAFTATPKHKTLAVFGRDEAGKAGQPFHRYTMSQAIEEGFIMDVLKNYTTYATYYK 538
Query: 856 VSNDKTSDTFFNDENKSSYHILK-----HPNNDKKIIQEKSSYIIKHFLKL-REQINNDE 909
+ K S+ N E K + L HP N I +K+ +++HF + R ++
Sbjct: 539 LV--KASEDDPNVERKQAAKALARFMRLHPYN----IAQKTEVMVEHFNAVTRHKVGG-- 590
Query: 910 FNCRAMLVTNSREQILLYKQTLESLVKSLPKNQKFDIIASFAKFSLKKKEKAEYDEKING 969
+AM+VT SR + + YK ++ ++ + + I + FS + D+++ G
Sbjct: 591 -KAKAMVVTGSRLEAVRYKLAFDAYIRE----KGYSWIKTLVAFSGEV-----VDDELPG 640
Query: 970 SYAEYFSKRNGISEILRNDK--KHRVQLIIVADKLSSGFDEPSLAVMYVDRALKGASAVQ 1027
GI E + +K Q+++VA+K +G+D+P L MYVD+ L G AVQ
Sbjct: 641 KTWTEVGMNGGIKEGVLPEKFDSSEYQVLLVAEKYQTGYDQPLLHTMYVDKRLAGIQAVQ 700
Query: 1028 TIGRLSRVSKGKNACYIVDFVNTRREISDAFGQY 1061
T+ RL+R+ K +++DFVN R+EI +AF QY
Sbjct: 701 TLSRLNRMHPLKEDTFVLDFVNDRQEIKEAFKQY 734
>gi|28199930|ref|NP_780244.1| type I restriction-modification system
endonuclease [Xylella fastidiosa Temecula1]
gb|AAO29893.1| type I restriction-modification system endonuclease [Xylella
fastidiosa Temecula1]
Length = 1031
Score = 159 bits (403), Expect = 6e-37
Identities = 141/493 (28%), Positives = 231/493 (46%), Gaps = 75/493 (15%)
Query: 659 YLIQHAAGSGKSHTIASLITNLYRLL-EDGKL--KYDLILVINDKRHLDYQLGSIITQFL 715
YLIQH+AGSGKS+TIA L L L +D + ++D I+VI D+R LD Q+ I +
Sbjct: 318 YLIQHSAGSGKSNTIAWLAHQLVELRRKDDPMTPQFDSIIVITDRRALDTQIADTIKGY- 376
Query: 716 KDNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNKYKSIAIISD 775
D+ H + L + L K +++++T+QKF ++D G K A++ D
Sbjct: 377 -DHVAAIFGHSDNAQELCEYLRGGK-KIIVTTVQKFPFILDQLG----DLSGKRFALLID 430
Query: 776 DIRS-----MTNTFSSILNGETREKN---------------------------------N 797
+ S +T L G+ E+ N
Sbjct: 431 EAHSSQGGKITARMHETLGGKVAEEEFEEEFEEEFEEDRTQDAVNAEIERRIASRKLLAN 490
Query: 798 ITYFCFTSTPKPKALELFGD-TRGNLRVPFH-----TYSIEKALQDKIVMNCIDHYTTVS 851
+YF FT+TPK K LELFG+ T +V F TY+ ++A+Q+K +++ ++ YT
Sbjct: 491 ASYFAFTATPKNKTLELFGEKTLVGDKVQFRSPEELTYTTKQAIQEKFILDVVEKYTPYD 550
Query: 852 ILTKVSNDKTSDTFFNDENKSSYHILKHPNNDKKIIQEKSSYIIKHFLKLREQINNDEFN 911
+V+ D F D+ K+ I + + K I+ K+ ++ HF+ E + +
Sbjct: 551 SFYQVAKTVADDPEF-DKVKALKKIRLYVESHDKAIRRKAEIMVDHFIA--EVVGKQKIG 607
Query: 912 --CRAMLVTNSREQILLYKQTLESLVKSLPKNQKFDIIASFAKFSLKKKEKAEYDEKING 969
RAM+V N + + Y + + + + K+ I+A F + ++K E D +NG
Sbjct: 608 GQARAMIVCNGIARAIDYWREVSDYLTQI-KSPYRAIVAYSGSFEIGGQKKTEAD--LNG 664
Query: 970 SYAEYFSKRNGISEILRNDKKHRVQLIIVADKLSSGFDEPSLAVMYVDRALKGASAVQTI 1029
++ +I KK + +IVA+K +GFDEP L MYVD+ L G AVQT+
Sbjct: 665 FPSK---------DIPDTLKKDPYRFLIVANKFVTGFDEPLLHTMYVDKPLAGVLAVQTL 715
Query: 1030 GRLSRVSKGKNACYIVDFVNTRREISDAFGQYWRETCLKGETRKTVLELKLNRVLGKLSA 1089
RL+R K +++DF + + AF Y+R T GET KL+ + +L
Sbjct: 716 SRLNRAHPQKRDTFVLDFADNAEAVKAAFQDYYRATIQMGETDPN----KLHDLKAELDG 771
Query: 1090 IEPLANGRLEESV 1102
+ + ++EE V
Sbjct: 772 QQVYSWSQVEEVV 784
>gi|56459753|ref|YP_155034.1| Type I site-specific
restriction-modification system, R subunit (helicase)
[Idiomarina loihiensis L2TR]
gb|AAV81485.1| Type I site-specific restriction-modification system, R subunit
(helicase) [Idiomarina loihiensis L2TR]
Length = 1058
Score = 158 bits (399), Expect = 2e-36
Identities = 135/473 (28%), Positives = 224/473 (46%), Gaps = 82/473 (17%)
Query: 659 YLIQHAAGSGKSHTIASLITNLYRLL-EDGKLKYDLILVINDKRHLDYQLGSIITQF--- 714
YLIQH+AGSGKS++IA L L +DG ++ I+V+ D+ LD QL + I QF
Sbjct: 313 YLIQHSAGSGKSNSIAWTAHQLSSLYADDGSKLFNSIVVVTDRTVLDSQLQNTIRQFEHA 372
Query: 715 -------LKDNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNKY 767
+D S S AL E++ R+++ T+Q F + D +KY
Sbjct: 373 DGVVRAITRDVGNKSKSEQLAEALQEQV------RIIVVTIQTFPALYDA------IDKY 420
Query: 768 KSI-----AIISDDIRSMTNTFSS----ILNGETREKNN--------------------I 798
++ AII+D+ S S+ L G R + + I
Sbjct: 421 PALQAGNYAIIADEAHSSQTGASASKLKALLGSDRPEGDDISAEELLDAAVQARMPNERI 480
Query: 799 TYFCFTSTPKPKALELFGD--------TRGNLRVPFHTYSIEKALQDKIVMNCIDHYTTV 850
+Y+ FT+TPK K LELFG + N FH YS+ +A+++ +++ + +YTT
Sbjct: 481 SYYAFTATPKGKTLELFGRPDDPHSPISDDNKPKAFHVYSMRQAIEEGFILDVLKNYTTY 540
Query: 851 SILTKVSNDKTSDTFFNDENKSSYHILK----HPNNDKKIIQEKSSYIIKHFLKLREQIN 906
+ K+++ + D D K+ + K HP N I ++ I++HF + +
Sbjct: 541 ATAWKIAHPEGEDKEV-DSKKARIKLAKWVRLHPYN----INQRVEIIVEHFRENVRHLL 595
Query: 907 NDEFNCRAMLVTNSREQILLYKQTLESLVKSLPKNQKFDIIASFAKFSLKKKEKAEYDEK 966
N + +AM+VT SR++ + Y+ + S + + + + + FS + D+
Sbjct: 596 NGQ--AKAMVVTGSRQEAVRYQLAMTSYIIE----KGYQDVHALVAFS----GEVPADDY 645
Query: 967 INGSYAEYFSKRNGISEILRNDK---KHRVQLIIVADKLSSGFDEPSLAVMYVDRALKGA 1023
I S EY K N ++DK ++IVA+K +GFD+P L MYVD+ L+G
Sbjct: 646 ITESVTEYDKKLNPGLNGRKHDKALDSDDFNVMIVANKYQTGFDQPKLCAMYVDKKLQGV 705
Query: 1024 SAVQTIGRLSRVSKGKNACYIVDFVNTRREISDAFGQYWRETCLKGETRKTVL 1076
VQT+ RL+R GK+ +++DF N+ +I ++F Y+ L T +L
Sbjct: 706 ECVQTLSRLNRTFPGKDQTFVLDFFNSEEDILESFKPYYTTAELDSVTDPHIL 758
>gi|42629287|ref|ZP_00154835.1| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Haemophilus influenzae R2846]
Length = 1007
Score = 157 bits (397), Expect = 3e-36
Identities = 125/457 (27%), Positives = 220/457 (47%), Gaps = 56/457 (12%)
Query: 657 KNYLIQHAAGSGKSHTIASLITNLYRLL----------EDGKLKYDLILVINDKRHLDYQ 706
K YLIQH+AGSGKS++I L L E + +D ++V+ D+R LD Q
Sbjct: 313 KRYLIQHSAGSGKSNSITWLAYQLIEAYPCNEKAANGREADRPIFDSVIVVTDRRLLDKQ 372
Query: 707 LGSIITQFLKDNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNK 766
L I F + ++ ++ + A L + L + K +++I+T+QKF ++D G + +K
Sbjct: 373 LRDNIKDFSEVKNI--VAPALSSAELRQSLEQGK-KIIITTIQKFPFIVD--GIADLGDK 427
Query: 767 YKSIAIISDDIRSMTNTFSSILN---GETRE-------------------KNNITYFCFT 804
++ II + S + + +N G+T + + N +YF FT
Sbjct: 428 QFAV-IIDEAHSSQSGSAHDNMNRAIGKTEDLDAEDVQDLILQAMQSRKMRGNASYFAFT 486
Query: 805 STPKPKALELFGDTRGNLRV-PFHTYSIEKALQDKIVMNCIDHYTTVSILTKVSNDKTSD 863
+TPK LE FG+ + + + PFH YS+++A+++ +++ I +YTT +++ +
Sbjct: 487 ATPKNSTLEKFGEKQADGKFKPFHLYSMKQAIEEGFILDVIANYTTYKSFYEITKSIEDN 546
Query: 864 TFFNDENKSSYHILKHPNNDKKIIQEKSSYIIKHFLKLREQINNDEFNCRAMLVTNSREQ 923
F D K+ + + ++ I K+ ++ HF++ + + M+VT + E
Sbjct: 547 PEF-DSKKAQGRLKAYVERSQQTIDTKAEIMLDHFIRQIFSRKKLKGKAKGMVVTQNIET 605
Query: 924 ILLYKQTLESLVKSLPKNQKFDIIASFAKFSLKKKEKAEYDEKINGSYAEYFSKRNGISE 983
+ Y Q L+ L+ + F I +F+ K + EY E +AE SE
Sbjct: 606 AIRYFQALKHLLAG--RGNPFKIAIAFS--GSKVVDGVEYTEAEMNGFAE--------SE 653
Query: 984 ILRNDKKHRVQLIIVADKLSSGFDEPSLAVMYVDRALKGASAVQTIGRLSR----VSKGK 1039
+ +L++VA+K +GFD+P L MYVD+ L G VQ + RL+R +SK
Sbjct: 654 TKEYFDQDEYRLLVVANKYLTGFDQPKLCAMYVDKKLSGVLCVQALSRLNRSANKLSKRT 713
Query: 1040 NACYIVDFVNTRREISDAFGQYWRETCLKGETRKTVL 1076
+++DF N+ +I AF ++ T L T VL
Sbjct: 714 EDLFVLDFFNSVEDIQQAFEPFYTSTSLSQATDVNVL 750
>gi|42632163|ref|ZP_00157701.1| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Haemophilus influenzae R2866]
Length = 1006
Score = 156 bits (394), Expect = 6e-36
Identities = 124/457 (27%), Positives = 219/457 (47%), Gaps = 56/457 (12%)
Query: 657 KNYLIQHAAGSGKSHTIASLITNLYRLL----------EDGKLKYDLILVINDKRHLDYQ 706
K YLIQH+AGSGKS++I L L E + +D ++V+ D+R LD Q
Sbjct: 312 KRYLIQHSAGSGKSNSITWLAYQLIEAYPCNEKAANGREADRPIFDSVIVVTDRRLLDKQ 371
Query: 707 LGSIITQFLKDNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNK 766
L I F + ++ ++ + A L + L + K +++I+T+QKF ++D G + +K
Sbjct: 372 LRDNIKDFSEVKNI--VAPALSSAELRQSLEQGK-KIIITTIQKFPFIVD--GIADLGDK 426
Query: 767 YKSIAIISDDIRSMTNTFSSILN---GETRE-------------------KNNITYFCFT 804
++ II + S + + +N G+T + + N +YF FT
Sbjct: 427 QFAV-IIDEAHSSQSGSAHDNMNRAIGKTEDLDAEDVQDLILQAMQSRKMRGNASYFAFT 485
Query: 805 STPKPKALELFGDTRGNLRV-PFHTYSIEKALQDKIVMNCIDHYTTVSILTKVSNDKTSD 863
+TPK LE FG+ + + + PFH YS+++A+++ +++ I +YTT +++ +
Sbjct: 486 ATPKNSTLEKFGEKQADGKFKPFHLYSMKQAIEEGFILDVIANYTTYKSFYEITKSIEDN 545
Query: 864 TFFNDENKSSYHILKHPNNDKKIIQEKSSYIIKHFLKLREQINNDEFNCRAMLVTNSREQ 923
F D K+ + + ++ I K+ ++ HF++ + + M+VT + E
Sbjct: 546 PEF-DSKKAQSRLKAYVERSQQTIDTKAEIMLDHFIRQIFNRKKLKGKAKGMVVTQNIET 604
Query: 924 ILLYKQTLESLVKSLPKNQKFDIIASFAKFSLKKKEKAEYDEKINGSYAEYFSKRNGISE 983
+ Y Q L+ L+ + F I +F+ K + EY E +AE SE
Sbjct: 605 AIRYFQALKRLLAG--RGNPFKIAIAFS--GSKVVDGVEYTEAEMNGFAE--------SE 652
Query: 984 ILRNDKKHRVQLIIVADKLSSGFDEPSLAVMYVDRALKGASAVQTIGRLSR----VSKGK 1039
+ +L++VA+K +GFD+P L MYVD+ L G VQ + RL+R + K
Sbjct: 653 TKEYFDQDEYRLLVVANKYLTGFDQPKLCAMYVDKKLSGVLCVQALSRLNRSANKLGKRT 712
Query: 1040 NACYIVDFVNTRREISDAFGQYWRETCLKGETRKTVL 1076
+++DF N+ +I AF ++ T L T VL
Sbjct: 713 EDLFVLDFFNSVEDIQQAFEPFYTSTSLSQATDVNVL 749
>gi|48243623|gb|AAT40773.1| putative type I site-specific
restriction-modification enzyme HsdR [Haemophilus
influenzae]
Length = 567
Score = 155 bits (391), Expect = 1e-35
Identities = 125/457 (27%), Positives = 219/457 (47%), Gaps = 56/457 (12%)
Query: 657 KNYLIQHAAGSGKSHTIASLITNLYRLL----------EDGKLKYDLILVINDKRHLDYQ 706
K YLIQH+AGSGKS++I L L E + +D ++V+ D+R LD Q
Sbjct: 3 KRYLIQHSAGSGKSNSITWLAYQLIEAYPRNEKAANGREADRPIFDSVIVVTDRRLLDKQ 62
Query: 707 LGSIITQFLKDNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNK 766
L I F + ++ ++ + A L + L + K +++I+T+QKF ++D G + +K
Sbjct: 63 LRDNIKDFSEVKNI--VAPALSSAELRQSLEQGK-KIIITTIQKFPFIVD--GIADLGDK 117
Query: 767 YKSIAIISDDIRSMTNTFSSILN---GETREKN-------------------NITYFCFT 804
++ II + S + + +N G+T + + N +YF FT
Sbjct: 118 QFAV-IIDEAHSSQSGSAHDNMNRAIGKTEDLDAEDVQDLILQTMQSRKMHGNASYFAFT 176
Query: 805 STPKPKALELFGDTRGNLRV-PFHTYSIEKALQDKIVMNCIDHYTTVSILTKVSNDKTSD 863
+TPK LE FG+ + + + PFH YS+++A+++ +++ I +YTT +++ +
Sbjct: 177 ATPKNSTLEKFGEKQADGKFKPFHLYSMKQAIEEGFILDVIANYTTYKSFYEITKSIEDN 236
Query: 864 TFFNDENKSSYHILKHPNNDKKIIQEKSSYIIKHFLKLREQINNDEFNCRAMLVTNSREQ 923
F D K+ + + ++ I K+ ++ HF+ + + M+VT + E
Sbjct: 237 PEF-DSKKAQSRLKAYVERSQQTIDTKAEIMLDHFIYQVFNRKKLKGKAKGMVVTQNIET 295
Query: 924 ILLYKQTLESLVKSLPKNQKFDIIASFAKFSLKKKEKAEYDEKINGSYAEYFSKRNGISE 983
+ Y Q L+ L+ + F I +F+ K + EY E +AE SE
Sbjct: 296 AIRYFQALKHLLAG--RGNPFKIAIAFS--GSKVVDGVEYTEAEMNGFAE--------SE 343
Query: 984 ILRNDKKHRVQLIIVADKLSSGFDEPSLAVMYVDRALKGASAVQTIGRLSR----VSKGK 1039
+ +L++VA+K +GFD+P L MYVD+ L G VQ + RL+R +SK
Sbjct: 344 TKEYFDQDEYRLLVVANKYLTGFDQPKLCAMYVDKKLSGVLCVQALSRLNRSANKLSKRT 403
Query: 1040 NACYIVDFVNTRREISDAFGQYWRETCLKGETRKTVL 1076
+++DF N+ +I AF ++ T L T VL
Sbjct: 404 EDLFVLDFFNSVEDIQQAFEPFYTSTSLSQATDVNVL 440
>gi|56750492|ref|YP_171193.1| hypothetical protein syc0483_c
[Synechococcus elongatus PCC 6301]
dbj|BAD78673.1| hypothetical protein [Synechococcus elongatus PCC 6301]
ref|ZP_00164194.1| COG0610: Type I site-specific restriction-modification system, R
(restriction) subunit and related helicases
[Synechococcus elongatus PCC 7942]
Length = 1039
Score = 153 bits (386), Expect = 5e-35
Identities = 125/470 (26%), Positives = 221/470 (46%), Gaps = 65/470 (13%)
Query: 659 YLIQHAAGSGKSHTIASLITNLYRLLE-DGKLKYDLILVINDKRHLDYQLGSIITQFLKD 717
YL+QH+AGSGK+++IA L + D + +D ++V++D+ +D QL I F +
Sbjct: 307 YLVQHSAGSGKTNSIAWTAHFFSELHDADNRKVFDSVIVVSDRNVIDTQLQEAIESFERH 366
Query: 718 NDLTSISHPNTIALLEKILT--KAKTRVVISTMQKFSKVIDTHGFDHISNKYKSIAIISD 775
+ + + + K+ K ++V+ T+Q F + + + + K A+I+D
Sbjct: 367 KGVVAAITRDDGSKSSKLAEALKGDKKIVVCTIQTFPFALQAVR-ELAATEGKRFAVIAD 425
Query: 776 DIRS-MTNTFSSILN---------------------------GETREKNNITYFCFTSTP 807
+ S T +S L + ++ ITY FT+TP
Sbjct: 426 EAHSSQTGEAASKLKQLLSPAELADLNDGGEVDLEAVLAAQMSDRARESGITYVAFTATP 485
Query: 808 KPKALELFGDTRG--------NLRVPFHTYSIEKALQDKIVMNCIDHYTTVSILTKVSND 859
K K LELFG NL +PFH YS+ +A+++ +++ + +YT+ + +++
Sbjct: 486 KAKTLELFGRRPDPNRPAGPDNLPMPFHVYSMRQAIEEGFILDVLQNYTSYKVAFRLAQ- 544
Query: 860 KTSDTFFNDENKSSYHILK--------HPNNDKKIIQEKSSYIIKHFLKLREQINNDEFN 911
+ F+D+ LK HP+N I +K + +++HF + + N +
Sbjct: 545 --AGQQFSDQEVERNAALKKLMGWVKLHPHN----IAQKVAIVVEHFQQYVAPLLNGK-- 596
Query: 912 CRAMLVTNSREQILLYKQTLESLVKSLPKNQKFDIIASFAKFSLKKKEKAEYDEKINGSY 971
+AM+V SR++ + +K ++ + + K + + FS + +++ + +
Sbjct: 597 AKAMVVVGSRKEAVRWKLAIDRYIAA-----KQYRLGTLVAFSGEVRDRDSGPDPFTETS 651
Query: 972 AEYFSKRNGISEILRNDKKHRVQLIIVADKLSSGFDEPSLAVMYVDRALKGASAVQTIGR 1031
G +I K R Q++IVA+K +GFD+P L MY+DR L G AVQT+ R
Sbjct: 652 PNLNPNLQG--DIRETFKSDRYQILIVANKFQTGFDQPLLCGMYIDRRLAGIQAVQTLSR 709
Query: 1032 LSRVSKGKNACYIVDFVNTRREISDAFGQYWRETCLKGET-RKTVLELKL 1080
L+R GK+ YIVDF N EI AF Y+ L T +L+L+L
Sbjct: 710 LNRCHPGKDTTYIVDFSNDPAEILAAFKTYYTTAELASATDPNLILDLRL 759
>gi|9656287|gb|AAF94914.1| type I restriction enzyme HsdR, putative
[Vibrio cholerae O1 biovar eltor str. N16961]
ref|NP_231400.1| type I restriction enzyme HsdR, putative [Vibrio cholerae O1 biovar
eltor str. N16961]
pir||E82160 probable type I restriction enzyme HsdR VC1765 [imported] - Vibrio
cholerae (strain N16961 serogroup O1)
Length = 1022
Score = 149 bits (376), Expect = 8e-34
Identities = 128/467 (27%), Positives = 227/467 (48%), Gaps = 56/467 (11%)
Query: 657 KNYLIQHAAGSGKSHTI---ASLITNLYRLLED-----GKLK--YDLILVINDKRHLDYQ 706
+ YLIQH+AGSGKS++I A + Y + +D GK +D ++V+ D+R LD Q
Sbjct: 314 QTYLIQHSAGSGKSNSITWAAYQLIETYPISDDLPGSRGKEMPLFDSVIVVTDRRLLDKQ 373
Query: 707 LGSIITQFLKDNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVID---------- 756
L I +F + ++ + + ++ L+ L K +++I+T+QKF ++D
Sbjct: 374 LRDNIKEFSEVKNIVAPAFKSSE--LKSALENGK-KIIITTIQKFPYIVDGIADLSDRRF 430
Query: 757 ------THGFDHISNKYK---SIAIISDDIRSMTNTFSSILNGETREKNNITYFCFTSTP 807
H N+ K ++ +S+D+ + S N + R +N +YF FT+TP
Sbjct: 431 AVIIDEAHSSQDGHNQDKLNEAMGFVSEDV--LDKALQSAKNRKMR--SNASYFAFTATP 486
Query: 808 KPKALELFGDTRGN-LRVPFHTYSIEKALQDKIVMNCIDHYTTVSILTKVSNDKTSDTFF 866
K LE FG + + VPFH YS+++A+++ +++ I +YTT ++ + F
Sbjct: 487 KNTTLEKFGQRQADGTYVPFHLYSMKQAIEEGFILDVIANYTTYKSYYEIEKSIQDNPEF 546
Query: 867 NDENKSSYHILKHPNNDKKIIQEKSSYIIKHFLKLREQINNDEFNCRAMLVTNSREQILL 926
D K+ + + ++ I K+ +++HF+K + + M+VT + E +
Sbjct: 547 -DSKKAQKRLRAYVEASQETIDTKAEIMLEHFIKHVVNGKKLKGKGKGMVVTQNIESAIR 605
Query: 927 YKQTLESLVKSLPKNQKFDIIASFAKFSLKKKEKAEYDEK-ING----SYAEYFS----K 977
Y + L + + F + +F+ K+ + EY E ING +YF +
Sbjct: 606 YYRALTRQLNKM--GNPFKVAIAFS--GSKEVDGIEYTEADINGFPEGDTKDYFDVNYKR 661
Query: 978 RNGISEILRNDKKHRVQLIIVADKLSSGFDEPSLAVMYVDRALKGASAVQTIGRLSR--- 1034
+ S I ++ + +L++VA+K +GFD+P L MYVD+ L VQ + RL+R
Sbjct: 662 KEPDSPIPKHVDQDAYRLLVVANKYLTGFDQPKLCAMYVDKKLASVLCVQALSRLNRSAP 721
Query: 1035 -VSKGKNACYIVDFVNTRREISDAFGQYWRETCLKGETRKTVL-ELK 1079
K +++DF N+ +I AF ++ T L T VL ELK
Sbjct: 722 KYGKKTEDLFVLDFFNSVDDIKTAFDPFYTSTTLSEATDVNVLHELK 768
>gi|48853355|ref|ZP_00307528.1| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Cytophaga hutchinsonii]
Length = 1034
Score = 148 bits (374), Expect = 1e-33
Identities = 126/476 (26%), Positives = 226/476 (47%), Gaps = 65/476 (13%)
Query: 657 KNYLIQHAAGSGKSHTIASLITNLYRLLED-------------GKLKYDLILVINDKRHL 703
+ YLIQH+AGSGKS++I Y+L+E +D ++V+ D+R L
Sbjct: 321 QTYLIQHSAGSGKSNSITWAA---YQLIETYPESDNLPGSKGVSNPLFDSVIVVTDRRLL 377
Query: 704 DYQLGSIITQFLKDNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHI 763
D Q+ I +F + ++ + ++ + L++ L K +++I+T+QKF ++D G +
Sbjct: 378 DKQIRENIKEFSEVKNIVAPAYSSKE--LKESLESGK-KIIITTIQKFPFIVD--GIADL 432
Query: 764 SNKYKSIAIISDDIRSMTNTFSSILN-------GETRE-------------------KNN 797
S+K ++ II + S + T + +N G+ E + N
Sbjct: 433 SDKRFAV-IIDEAHSSQSGTSAGTMNQVMGNAAGDATEDEEIDPQDKILEAMRARKMRGN 491
Query: 798 ITYFCFTSTPKPKALELFGDTRGNLRV-PFHTYSIEKALQDKIVMNCIDHYTTVSILTKV 856
+Y FT+TPK LE FG + + + PFH YS+++A+++ +++ + +YTT ++
Sbjct: 492 ASYLAFTATPKNNTLERFGVKQEDGKYKPFHLYSMKQAIEEGFILDVLANYTTYKSYYEI 551
Query: 857 SNDKTSDTFFNDENKSSYHILKHPNNDKKIIQEKSSYIIKHFLKLREQINNDEFNCRAML 916
+ F + K+ + + +K+ I K+ ++ HF+ + +AM+
Sbjct: 552 EKSIEDNPLF-ETVKAQKKLRTYVEQNKQTIATKADIMLDHFMTKLVNTKRLKGKAKAMV 610
Query: 917 VTNSREQILLYKQTLESLVKSLPKNQKFDIIASFAKFSLKKKEKAEYDEKINGSYAEYFS 976
T S E + Y L+ L+ + F I +F+ +KK + EY E + +
Sbjct: 611 ATQSIESAINYYFALKKLLDE--QGNPFKIAIAFS--GVKKIKGIEYTEDSLNDFPAHLD 666
Query: 977 KRNGISEILRNDKKHRV------QLIIVADKLSSGFDEPSLAVMYVDRALKGASAVQTIG 1030
+DK R ++++VA+K +G+D+P L MYVD+ L+G AVQ +
Sbjct: 667 TAKPSDPGYISDKIARFVNMDEYRMLVVANKYLTGYDQPKLTAMYVDKKLQGVIAVQALS 726
Query: 1031 RLSR----VSKGKNACYIVDFVNTRREISDAFGQYWRETCLKGETRKTVL-ELKLN 1081
RL+R + K +I+DF NT +I AF ++ T L T VL ELK N
Sbjct: 727 RLNRSADKLGKKTEDLFILDFYNTTEDIKKAFDPFYTATSLSKATDINVLHELKSN 782
>gi|45522101|ref|ZP_00173617.1| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Methylobacillus flagellatus KT]
Length = 1022
Score = 146 bits (369), Expect = 5e-33
Identities = 130/464 (28%), Positives = 220/464 (47%), Gaps = 73/464 (15%)
Query: 655 NSKNYLIQHAAGSGKSHTIASLITNLYRL--LEDGKLKYDLILVINDKRHLDYQLGSIIT 712
+ +NYLIQH+AGSGKS++IA L L L +D K+ + ++V+ D+R LD QL + I
Sbjct: 307 SGRNYLIQHSAGSGKSNSIAWLAHRLASLHDAQDQKV-FHSVVVVTDRRVLDQQLQNTIY 365
Query: 713 QFLKDNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKV------IDTHGFD-HISN 765
QF + +T L + T ++I+T+QKF + ++ G I
Sbjct: 366 QFEHKTGVVEKIDEDTQQLARAL--SQGTPIIITTIQKFPFISQALSTLERKGAGVKIDT 423
Query: 766 KYKSIAIISDDIRS--------------------------MTNTFSSILNGETR------ 793
+ A+I D+ S M++ L+ E R
Sbjct: 424 AGRRFAVIVDEAHSSQSGETATALRGMLNRDGIEAAIAAQMSDEEDDDLSAEARAALLRD 483
Query: 794 -----EKNNITYFCFTSTPKPKALELFGDTRGNLRVPFHTYSIEKALQDKIVMNCIDHYT 848
+ N+++F FT+TPK K LF + + PFH Y++ +A+++ +M+ + +YT
Sbjct: 484 ALKRARQPNLSFFAFTATPKFKTKVLFDEPGPSGTSPFHEYTMRQAIEEGFIMDVLQNYT 543
Query: 849 TVS----ILTKVSNDKTSDTFFNDENKSSYHILKHPNNDKKIIQEKSSYIIKHF-LKLRE 903
T ++ +V ND + + Y L HP N ++++ S I++HF L +
Sbjct: 544 TYKRFFGLIKQVENDPEVPRKKAAKALTRYLEL-HPVNIEQVV----SVIVEHFRLYVMH 598
Query: 904 QINNDEFNCRAMLVTNSREQILLYKQTLESLVKSLPKNQKFDIIASFAKFSLKKKEKAEY 963
++ +AM+VT SR + YK + +K+ + I S FS E
Sbjct: 599 ELGG---RAKAMVVTGSRLAAVKYKLAFDQYIKA----NGYTGIRSLVAFS----GTVED 647
Query: 964 DEKINGSYAEYFSKRNGI--SEILRNDKKHRVQLIIVADKLSSGFDEPSLAVMYVDRALK 1021
+ SY E S +G+ SE+ ++ ++++VA+K +GFD+P L MYV + L
Sbjct: 648 PDDPGASYTEV-SMNDGLAESELPETFERDDYRVLLVAEKYQTGFDQPLLQTMYVVKKLA 706
Query: 1022 GASAVQTIGRLSRVSKGKNACYIVDFVNTRREISDAFGQYWRET 1065
G AVQT+ RL+R++ GK +++DF N +I AF Y+ T
Sbjct: 707 GVQAVQTLSRLNRMAPGKARTFVLDFANEEDDIFKAFKPYYEAT 750
>gi|54308080|ref|YP_129100.1| putative type I restriction enzyme HsdR
[Photobacterium profundum SS9]
emb|CAG19298.1| putative type I restriction enzyme HsdR [Photobacterium profundum]
Length = 1016
Score = 146 bits (368), Expect = 7e-33
Identities = 128/461 (27%), Positives = 222/461 (47%), Gaps = 66/461 (14%)
Query: 657 KNYLIQHAAGSGKSHTIASLITNLYRLLE---------DGKLK----YDLILVINDKRHL 703
+ YLIQH+AGSGKS++I Y+L+E GK +D ++V+ D+R L
Sbjct: 323 QTYLIQHSAGSGKSNSITWAA---YQLIEAYPGNETAAGGKSLEQPLFDSVIVVTDRRIL 379
Query: 704 DYQLGSIITQFLKDNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHI 763
D QL I QF + ++ I N + L+ L + K +++I+T+QKF +ID G +
Sbjct: 380 DKQLRENIQQFSEVKNI--IVPANKSSELKSALEQGK-KIIITTIQKFPFIID--GISDL 434
Query: 764 SNKYKSIAIISDDIRSMTNTFSSILN---GETRE-----------------KNNITYFCF 803
S+K ++ II + S + + +N G E + N +Y F
Sbjct: 435 SDKRFAV-IIDEAHSSQSGSAHDNMNRAMGNVEEEADAQDKILEAMKSRKMRGNASYLAF 493
Query: 804 TSTPKPKALELFGDTR--GNLRVPFHTYSIEKALQDKIVMNCIDHYTTVSILTKVSNDKT 861
T+TPK LE FG + G+ + PFH YS+++A+++ +++ + Y T ++ +
Sbjct: 494 TATPKNTTLEKFGQKQPDGSYK-PFHLYSMKQAIEEDFILDVLASYNTYKSYYEIEKSIS 552
Query: 862 SDTFFNDENKSSYHILKHPNNDKKIIQEKSSYIIKHFLKLREQINNDEFNCRAMLVTNSR 921
+ FN + K+ + ++ I K+ ++ HF+ + + M+VT +
Sbjct: 553 ENPLFNSK-KAQKKLKGFVERQQQTINIKAEIMLDHFIPHVVNPKLLKGKAKGMVVTQNI 611
Query: 922 EQILLYKQTLESLVKSLPKNQKFDIIASFAKFSLKKKEKAEYDEKINGSYAEYFSKRNGI 981
E + Y + + +K + F +I +F+ K + EY E S+ NG
Sbjct: 612 ETAIRYYKAICRQLKE--RGNPFKVILAFS--GEKTVDGIEYTE----------SEVNGF 657
Query: 982 SEILRNDK--KHRVQLIIVADKLSSGFDEPSLAVMYVDRALKGASAVQTIGRLSR----V 1035
++ DK +L+IVA+K +GFD+P L+ MYVD+ L+G AVQ + RL+R +
Sbjct: 658 ADTETKDKFDTDEYRLLIVANKYLTGFDQPKLSAMYVDKKLQGVLAVQALSRLNRSAQKL 717
Query: 1036 SKGKNACYIVDFVNTRREISDAFGQYWRETCLKGETRKTVL 1076
K +I+DF N+ +I +F ++ T L T VL
Sbjct: 718 DKRTEDLFILDFFNSTDDIKKSFDDFYTSTSLSEATDVNVL 758
>gi|53718588|ref|YP_107574.1| hypothetical protein BPSL0945
[Burkholderia pseudomallei K96243]
emb|CAH34941.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
Length = 1037
Score = 145 bits (367), Expect = 9e-33
Identities = 124/457 (27%), Positives = 225/457 (49%), Gaps = 56/457 (12%)
Query: 655 NSKNYLIQHAAGSGKSHTIASLITNLYRLLEDGKLK-YDLILVINDKRHLDYQLGSIITQ 713
+ + YLIQH+AGSGK+++IA L L +D K +D +LV++D+ LD QL I
Sbjct: 299 SGQRYLIQHSAGSGKTNSIAWTAHFLADLHDDNHHKLFDSVLVVSDRTVLDAQLQEAIFD 358
Query: 714 FLKDNDLTSI---SHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNKYKSI 770
F + + + H + A L + L K ++++ T+Q F + + + + K
Sbjct: 359 FERTTGVVATITKEHGSKSAQLGQALKDGK-KIIVCTIQTFPFALQAVQ-ELAATEGKRF 416
Query: 771 AIISDDIR-SMTNTFSSILN--------------GETREK-------------NNITYFC 802
A+I+D+ S T ++ L GE + +TY
Sbjct: 417 AVIADEAHCSQTGEAAAKLKQLLSAEEWADLQDGGEIDTEALLAAQMEARTGAKGLTYVA 476
Query: 803 FTSTPKPKALELFGDTRGN-LRVPFHTYSIEKALQDKIVMNCIDHYTTVSILTKVS-NDK 860
FT+TPK K LELFG + L PFH YS+ +A+++ +++ + +YT+ + +++ N +
Sbjct: 477 FTATPKQKTLELFGRPGPDGLPEPFHVYSMRQAIEEGFILDVLKNYTSYKLAFRLAHNGQ 536
Query: 861 TSDTFFNDENKSSYHILK----HPNNDKKIIQEKSSYIIKHFLKLREQINNDEFNCRAML 916
D + + + I++ HP N I +K +++H+ + + + + + +AM+
Sbjct: 537 EYDEKQVERSAAMKGIMQWVRLHPYN----IAQKVQIVVEHYRENVQPLLDGK--AKAMV 590
Query: 917 VTNSREQILLYKQTLESLVKSLPKNQKFDIIASFAKFSLKKKEKAEYDEKINGSYAEYFS 976
V SR++ + +++ + + ++ +N ++ +F S + + Y + + E
Sbjct: 591 VVASRKEAVRWQKAIRAYIEK--RNYPLGVLVAF---SGEIDDPESYPAPVTEASKELNP 645
Query: 977 KRNG--ISEILRNDKKHRVQLIIVADKLSSGFDEPSLAVMYVDRALKGASAVQTIGRLSR 1034
NG I + + H L++VA+K +GFD+P L MYVD+ L G AVQT+ RL+R
Sbjct: 646 GLNGRDIRDAFAEPEYH---LLLVANKFQTGFDQPLLCGMYVDKMLGGIQAVQTLSRLNR 702
Query: 1035 VSKGKNACYIVDFVNTRREISDAFGQYWRETCLKGET 1071
GK+ YI+DFVN +I AF Y+ L+ T
Sbjct: 703 AHPGKDTTYILDFVNEAGDILKAFKTYYETAELEATT 739
>gi|41690596|ref|ZP_00147128.1| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Psychrobacter sp. 273-4]
Length = 1102
Score = 143 bits (361), Expect = 4e-32
Identities = 119/456 (26%), Positives = 209/456 (45%), Gaps = 55/456 (12%)
Query: 657 KNYLIQHAAGSGKSHTIASLITNLYRLLED-GKLKYDLILVINDKRHLDYQLGSIITQFL 715
+ YLIQH+AGSGKS++IA L L D G ++ ++VI D+ LD QL I QF
Sbjct: 338 QKYLIQHSAGSGKSNSIAWTAHQLSTLYNDQGDKQFHSVIVITDRTILDDQLQETIYQFE 397
Query: 716 K-DNDLTSISHPNTIALLEKILTKAKTR---VVISTMQKFSKVIDTHGFDHI--SNKYKS 769
D + I+ + L +A ++I T+Q F V+ + S +Y
Sbjct: 398 HADGVVGKINRKEGDGSKSEKLAEALVNSQPIIIVTIQTFPFVLKAIEDSSVLKSRRYAI 457
Query: 770 IA------------------IISDDIRSMTNTFSSILNGET------------REKNNIT 799
IA ++S DI S T+ + + ++ R N++
Sbjct: 458 IADEAHSSQTGSTARQLKEVLVSGDIESNTDDDKPLSSEDSLDFILDATLAARRSSPNLS 517
Query: 800 YFCFTSTPKPKALELFGD--------TRGNLRVPFHTYSIEKALQDKIVMNCIDHYTTVS 851
Y+ FT+TPKPK +ELFG ++ NL +H YS+ +A+++ +++ + +YT
Sbjct: 518 YYAFTATPKPKTIELFGRLPNPDLPASKDNLPAAYHVYSMRQAIEEGFILDVLKNYTNYK 577
Query: 852 ILTKVSNDKTSDTFFNDENKSSYHILKHPNNDKKIIQEKSSYIIKHFLKLREQINNDEFN 911
++ ++ + D ++ + + I +K II+HF + + +
Sbjct: 578 VVYQLKQKLAAADDEVDARRAKIKLNSWVRLHEHNIAQKVKIIIEHFNDNIKGLLGGQ-- 635
Query: 912 CRAMLVTNSREQILLYKQTLESLVKSLPKNQKFDIIASFAKFSLKKKEK---AEYDEKIN 968
+AM+VT SR++ + YK ++ + ++A + + + A EK
Sbjct: 636 AKAMVVTGSRKEAVRYKIAFDNYIADYGYRNINAMVAFSGEVTFNDNDPDSGALIGEKFT 695
Query: 969 GSYAEYFSKRNGISEILRNDKKHRVQLIIVADKLSSGFDEPSLAVMYVDRALKGASAVQT 1028
K + + +D Q+++VA+K +GFD+P L MYVD+ L G VQT
Sbjct: 696 EHNMNIGLKGRDLRKAFDSDD---YQVMLVANKFQTGFDQPKLCAMYVDKKLTGVDCVQT 752
Query: 1029 IGRLSRVSKGK--NACYIVDFVNTRREISDAFGQYW 1062
+ RL+R KGK + +++DF N +I +AF Y+
Sbjct: 753 LSRLNRTYKGKAESGTFVLDFFNDPEDILEAFQPYY 788
>gi|16124876|ref|NP_419440.1| hypothetical protein CC0623 [Caulobacter
crescentus CB15]
gb|AAK22608.1| conserved hypothetical protein [Caulobacter crescentus CB15]
pir||D87326 conserved hypothetical protein CC0623 [imported] - Caulobacter
crescentus
Length = 964
Score = 142 bits (357), Expect = 1e-31
Identities = 122/458 (26%), Positives = 221/458 (47%), Gaps = 67/458 (14%)
Query: 659 YLIQHAAGSGKSHTIASLITNLYRLLE--DGKLKYDLILVINDKRHLDYQLGSIITQFLK 716
+LIQH+AGSGK+++IA L L + D KL + ++V++D+ +D QL + F +
Sbjct: 301 FLIQHSAGSGKTNSIAWSAHILSELHDAADNKL-FSSVIVVSDRNVIDTQLQEALFDFQR 359
Query: 717 DNDLT----SISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNKYKSIAI 772
+ S S + L E + A +V++ T+Q F ++ + + + K+ A+
Sbjct: 360 TAGVVATIKSESGSKSGQLAEALA--AGKKVIVCTIQTFPFALEAVR-EQAATQGKAFAV 416
Query: 773 ISDDIRS-----------------------------MTNTFSSILNGETREKNNITYFCF 803
I+D+ S ++ + G +ITY F
Sbjct: 417 IADEAHSSQTGEAAGKLKQMLSDAEIAELADGGEIDFETQLTANMAGRAASDKSITYVAF 476
Query: 804 TSTPKPKALELFG--DTRGNLRVPFHTYSIEKALQDKIVMNCIDHYTTVSILTKVSNDKT 861
T+TPK K L+LFG D G L PFH YS+ +A+++ +++ + +YT S+ K++ND
Sbjct: 477 TATPKAKTLQLFGRPDADG-LPAPFHVYSMRQAIEEGFILDVLKNYTPYSLAFKLANDGQ 535
Query: 862 S-DTFFNDENKSSYHILK----HPNNDKKIIQEKSSYIIKHFLKLREQINNDEFNCRAML 916
D + + + I++ HP N I +K +++H+ + + + + + +AM+
Sbjct: 536 EWDEREVERDTALKGIMRWVRLHPYN----IAQKVQIVVEHYRENVQPLLDGK--AKAMV 589
Query: 917 VTNSREQILLYKQTLESLVKSLPKNQKFDIIASFAKFSLKKKEKAEYDEKINGSYAEYFS 976
V SR++ + + + + ++ + + + FS E ++ G+ +E +
Sbjct: 590 VLGSRQEAVRWSVAINAYIRKMGYP-----LGTLVAFS------GEVNDDELGAVSETSA 638
Query: 977 KRN-GIS--EILRNDKKHRVQLIIVADKLSSGFDEPSLAVMYVDRALKGASAVQTIGRLS 1033
N G++ +I K ++VA+K +GFD+P L MYVDR L G AVQT+ RL+
Sbjct: 639 ALNPGLNGRDIRDAFKAENFHFLLVANKFQTGFDQPLLCGMYVDRRLAGIQAVQTLSRLN 698
Query: 1034 RVSKGKNACYIVDFVNTRREISDAFGQYWRETCLKGET 1071
R GK+ YI+DF N+ +I AF Y+ L+ T
Sbjct: 699 RAHPGKDTTYILDFCNSAEDILTAFRTYYETAELEAAT 736
>gi|21109200|gb|AAM37743.1| type I restriction-modification system
endonuclease [Xanthomonas axonopodis pv. citri str. 306]
ref|NP_643207.1| type I restriction-modification system endonuclease [Xanthomonas
axonopodis pv. citri str. 306]
Length = 1084
Score = 136 bits (342), Expect = 7e-30
Identities = 121/463 (26%), Positives = 217/463 (46%), Gaps = 70/463 (15%)
Query: 657 KNYLIQHAAGSGKSHTIASLITNLYRLLEDGKLK-YDLILVINDKRHLDYQLGSIITQFL 715
++YL +H+AGSGK+ TIA +L RL D + + ++V+ D+ LD QL + Q
Sbjct: 311 QSYLCEHSAGSGKTSTIAWTAHDLIRLRTDAGVNLFHSVIVVTDRTVLDKQLQYAVQQID 370
Query: 716 KDNDL-TSISHPNTIALLEKILTKAKTR---VVISTMQKFSKVID---THGFDHISNKYK 768
DL +I ++ K L +A R +++ T+Q F ++ T+G +
Sbjct: 371 HQKDLIAAIGEKDSGVSKSKELAEALERGTPIIVVTIQTFPYAMEQILTNG----KLADR 426
Query: 769 SIAIISDDIR-SMTNTFSSILNG----------------ETREK--------NNITYFCF 803
+ A+I D+ S T T +S L E EK NN++YF F
Sbjct: 427 NFAVIIDEAHTSQTGTAASKLQATLALRDAKAMEGLTVEELLEKIQSSRVRPNNVSYFAF 486
Query: 804 TSTPKPKALELFG---------DTRGNLRVPFHTYSIEKALQDKIVMNCIDHYTTVSILT 854
T+TPK L LFG NL V F Y + +A+++ +++ + Y
Sbjct: 487 TATPKHATLTLFGTRPDPGKPASKEDNLPVSFDKYPMRQAIEEGFILDVLQGYLPYKTAF 546
Query: 855 KVSNDKTSDTFFNDENKSSYHILK-----HPNNDKKIIQEKSSYIIKHFLKLREQINNDE 909
++ + E K++ L H N + +K +I++HF +
Sbjct: 547 NMAEPEKDGK--RVEGKAAKRALAKWLSLHATN----VTQKVEFIVEHFAANVAPLLGG- 599
Query: 910 FNCRAMLVTNSREQILLYKQTLESLVKSLPKNQKFDIIASFAKFSLKKKEKAEYDEKI-N 968
+AM+VT+SR + YK+ ++ +++ P+++ + + +F+ + DE++ N
Sbjct: 600 -TAKAMIVTSSRAAAVRYKKAFDAYIRANPQHKPYQALVAFSGSLTGNEVMHASDEQLKN 658
Query: 969 GSYA----EYFSK-----RNGISEILRNDKKHRVQLIIVADKLSSGFDEPSLAVMYVDRA 1019
+A E F++ R +++ + + +++IVA+K +GFD+P L MY+D+
Sbjct: 659 DPFAAQDDEQFTESTMNPRQYGTDLRKVFDRPEFRVMIVANKFQTGFDQPKLCAMYLDKK 718
Query: 1020 LKG-ASAVQTIGRLSRVSKGKNACYIVDFVNTRREISDAFGQY 1061
+ VQT+ RL+R + GK+ ++VDFVN + I DAF Y
Sbjct: 719 IANPVEIVQTLSRLNRTAPGKDTTFVVDFVNDPQSILDAFAMY 761
>gi|23473873|ref|ZP_00129168.1| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Desulfovibrio desulfuricans G20]
Length = 1085
Score = 132 bits (332), Expect = 1e-28
Identities = 121/460 (26%), Positives = 209/460 (45%), Gaps = 69/460 (15%)
Query: 659 YLIQHAAGSGKSHTIASLITNLYRLLED-GKLKYDLILVINDKRHLDYQLGSIITQF--- 714
YL H+AGSGK+ TI+ +L +L ED G ++ ++++ D+ LD QL + Q
Sbjct: 320 YLCDHSAGSGKTSTISWTAHDLVKLREDNGDAVFNSVIIVTDRNVLDGQLQDAVKQIDHQ 379
Query: 715 ---LKDNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNKYKSIA 771
+ D S + L E +L+ T +V+ T+Q F ++ D + K K+ A
Sbjct: 380 FGVIAAIDRQKSSKSKSKQLSEALLSG--TPIVVVTIQTFPYAMEAIITDK-ALKGKNFA 436
Query: 772 IISDDIRSM----------------------TNTFSSILNGETREK---NNITYFCFTST 806
+I D+ + T T +L + + NI+YF FT T
Sbjct: 437 VIIDEAHNSQTGATAAKLQAALGMSGQGKMSTMTVDELLEQLQKSRARPKNISYFAFTGT 496
Query: 807 PKPKALELFGD--------TRGNLRVPFHTYSIEKALQDKIVMNCIDHYT---TVSILTK 855
PK L LFG + N FH Y++ +A+++K +++ + Y T L+K
Sbjct: 497 PKHSTLMLFGRPTDPSQPASDDNPPQAFHLYTMRQAIEEKFILDVLKGYVPYKTAFNLSK 556
Query: 856 VSNDKTSDTFFNDENKSSYHILKHPNNDKKIIQEKSSYIIKHFLKLREQINNDEFNCRAM 915
D + + + + HP N + +K +I++HF K + + +AM
Sbjct: 557 QIEDSKRVSGKAAKRALAQWMSLHPTN----VTQKVQFIVEHFTK--NVAHRLDGKAKAM 610
Query: 916 LVTNSREQILLYKQTLESLVKSLPKNQKFDIIASFAKFSLKKKEK-------AEY-DEKI 967
+VT+SR + YK+ + ++ ++ ++ I S FS K K E+ D+
Sbjct: 611 VVTSSRAAAIRYKKAFDRYIE---QHSEYGFIHSLVAFSGKMTGKQVMHQDDGEFKDDVF 667
Query: 968 NGSYAEYFSKRNGISEILRNDKKH-----RVQLIIVADKLSSGFDEPSLAVMYVDRALKG 1022
E F++++ +I D + ++++VADK +GFD+P L MYVD+ +
Sbjct: 668 IVDENEEFTEQSMNPDIHGQDLRFAFDRPEYRVMLVADKFQTGFDQPKLVAMYVDKKIAN 727
Query: 1023 -ASAVQTIGRLSRVSKGKNACYIVDFVNTRREISDAFGQY 1061
VQT RL+R + GK+ +I+DFVN + AF Y
Sbjct: 728 HVEIVQTFSRLNRTAPGKDEVFIIDFVNDPENVRQAFTTY 767
>gi|23491885|dbj|BAC16860.1| conserved hypothetical protein
[Corynebacterium efficiens YS-314]
ref|NP_736660.1| hypothetical protein CE0050 [Corynebacterium efficiens YS-314]
Length = 1064
Score = 131 bits (330), Expect = 2e-28
Identities = 124/482 (25%), Positives = 213/482 (43%), Gaps = 84/482 (17%)
Query: 658 NYLIQHAAGSGKSHTIASLITNLYRLLED-GKLKYDLILVINDKRHLDYQLGSIITQFLK 716
NYLIQH+AGSGK+ +IA L L + G+ +D + VI D++ LD QL + Q
Sbjct: 313 NYLIQHSAGSGKTDSIAWTAHRLASLHDKAGEKVFDTVFVIADRQVLDRQLQDAVQQLET 372
Query: 717 D----NDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVI----DTHGFDHISNKYK 768
+ S + + L ++LT ++V T+Q F + D D ++ +
Sbjct: 373 VAGTFQAIDSGGDGSKTSRLTQVLTSGTAKIVGVTLQTFPHALAALKDPANQDKLAGR-- 430
Query: 769 SIAIISDDIRSMTNTFSSILNGE----TRE-------------------------KNNIT 799
A+I+D+ S S+ E TRE ++
Sbjct: 431 RFAVIADEAHSSQTGSSAKAVREMLYLTREIPEFDLEEPGADQDALAAMAAHSDADKRLS 490
Query: 800 YFCFTSTPKPKALELFGDTRGNLRV----PFHTYSIEKALQDKIVMNCIDHYTTVSILTK 855
YF FT+TPK K LELFG R NL PF Y +++A+++ +++ + +YTT + +
Sbjct: 491 YFAFTATPKAKTLELFG--RRNLATQELEPFDLYPMKQAIEEGFILDVLKNYTTYEMAAR 548
Query: 856 VSNDKTS-----------DTFFNDENKSSYHILK-----------HPNNDKKIIQEKSSY 893
V+ + T+ DT D + + + HP N + K
Sbjct: 549 VALNGTTTPGSTPADGPQDTPTGDVGEGEVDVRQGTRAYINFVELHPTN----VASKVDV 604
Query: 894 IIKHFLKLREQINNDEFNCRAMLVTNSREQILLYKQTLESLVKSLPKNQKFDIIASFAKF 953
I++H+ + +AM+VT SR + Y + E + +N + +F+
Sbjct: 605 ILEHYRSTVQPHLGGR--AKAMVVTASRAAAVRYARAFEKAITE--RNLPLQTLVAFSG- 659
Query: 954 SLKKKEKAEYDEKINGSYAEYFS----KRNGISEILRNDKKHRVQLIIVADKLSSGFDEP 1009
+ + A E K ++ + D ++ +++VA+K +GFD+P
Sbjct: 660 EVPDPDVASLPGTAQKMVTEMSMNPALKGRDLASVFAQDGQN---ILVVANKYQTGFDQP 716
Query: 1010 SLAVMYVDRALKGASAVQTIGRLSRVSKGKNACYIVDFVNTRREISDAFGQYWRETCLKG 1069
L MYVD+ L G +AVQT+ RL+R + GK Y++DFVN +I ++F Y+ ++
Sbjct: 717 LLVGMYVDKQLSGIAAVQTLSRLNRRAPGKTDTYVLDFVNDAEQILESFKTYYEAAHIET 776
Query: 1070 ET 1071
E+
Sbjct: 777 ES 778
>gi|53690938|ref|ZP_00346524.1| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Desulfovibrio desulfuricans G20]
Length = 810
Score = 128 bits (321), Expect = 2e-27
Identities = 90/315 (28%), Positives = 158/315 (49%), Gaps = 43/315 (13%)
Query: 657 KNYLIQHAAGSGKSHTIASLITNLYRLLEDGKLKYDLILVINDKRHLDYQLGSIITQFLK 716
+ YLIQH+AGSGKS++IA L L L + K +D ++V+ D+R LD Q+ I QF +
Sbjct: 296 RRYLIQHSAGSGKSNSIAWLAHQLVGLEHESKALFDSVIVVTDRRVLDKQIRDTIKQFAQ 355
Query: 717 DNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNKYKSIAIISDD 776
+ ++ H L K L KA +++I+T+QKF ++D G +H +K+ AII D+
Sbjct: 356 VS--ATVGHAEHSGDLRKFL-KAGKKIIITTVQKFPFILDEIGDEHRKSKF---AIIIDE 409
Query: 777 IRS------------------------------MTNTFSSILNGETREKNNITYFCFTST 806
S + + + I+ G + N +YF FT+T
Sbjct: 410 AHSSQGGKTTAAMNRVLEETAPYGGSDDEEEETVEDKINKIMEGR-KMVTNASYFAFTAT 468
Query: 807 PKPKALELFGD----TRGNLR-VPFHTYSIEKALQDKIVMNCIDHYTTVSILTKVSNDKT 861
PK K LE+FG+ G ++ PFH+Y++++A+Q+ +++ + +YT V +++
Sbjct: 469 PKNKTLEIFGEPDPQPDGTVKHHPFHSYTMKQAIQEGFILDVLKNYTPVESYYRLAKTVE 528
Query: 862 SDTFFNDENKSSYHILKHPNNDKKIIQEKSSYIIKHFLKLREQINNDEFNCRAMLVTNSR 921
D F D NK+ + ++ + + I+EK+ ++ HF + RAM++TN
Sbjct: 529 DDPLF-DANKAQKKLRRYVESHEHAIREKAEIMVDHFHAQVIGHRKIGGHARAMVITNGI 587
Query: 922 EQILLYKQTLESLVK 936
E+ + Y +K
Sbjct: 588 ERAIQYFHAFRDYLK 602
>gi|53688022|ref|ZP_00109780.2| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Nostoc punctiforme PCC 73102]
Length = 1078
Score = 120 bits (300), Expect = 5e-25
Identities = 121/442 (27%), Positives = 199/442 (44%), Gaps = 56/442 (12%)
Query: 654 KNSKNYLIQHAAGSGKSHTIASLITNLYRLLEDGKLKYDLILVINDKRHLDYQLGSIITQ 713
KN + L+Q+AAG GKS+ I L L +G+ YD I+++ D+ L Q+ S +
Sbjct: 384 KNVYSLLLQYAAGFGKSNIIGWTALQLKDLRRNGQYVYDKIMIVVDRLQLRSQIDSKMLN 443
Query: 714 FLKDNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNKYK-SIAI 772
DN + I N + + ++ TR+VI +QKF V + D + + I
Sbjct: 444 MNIDNRMY-IEANNKKTFQDAL--QSDTRLVIVNLQKFGAVREMLDADTLQKLAQLRIVF 500
Query: 773 ISDDIR---------SMTNTFSSILN--------GETREKNNITYFCFTSTPKPKALELF 815
+ D+I M N F + +TR K N+ FT+TP L F
Sbjct: 501 LIDEIHRSNSGDQHEEMVNIFDELQTPFDQQTQYNQTRTKKNLIVG-FTATPDDHTLARF 559
Query: 816 GDTRG-----NLRVPFHTYSIEKALQDKIVMNCIDHYTTVSILTKVSNDKTSDTFFNDEN 870
G+ G L VPF +Y++++A++D ++N + + V + +K+ D ++ E
Sbjct: 560 GEFSGYAESEKLWVPFDSYTMKEAIEDGFILNPLKNI--VPVASKMLFDIPTNELEGFEE 617
Query: 871 KSSYHILKHPNNDKKIIQEKSSYIIKHFLKLREQINNDEFNC-----RAMLVTNSREQIL 925
+ + + DKK I E I + + + D + +AML S + +
Sbjct: 618 PN------YKDADKKQIYENRDRINAIAQYIADLLVKDVYRQIRGTGKAMLAVYSIKAAI 671
Query: 926 LYKQTLESLVKSLPKNQKFDIIASFAKFSLKKKEKAEYDEKINGSYAEYFSKRNGISE-- 983
YKQ + L K K+ A + + + DE+ NG++E
Sbjct: 672 AYKQAVTQHFNELVKQPKY---AKYTDAPIHVVYSSNQDEQ------NATGLNNGLTEEK 722
Query: 984 ILRNDKKHRVQLIIVADKLSSGFDEPSLAVMYVDRALKGASAVQTIGRLSRVSKGKNACY 1043
+L + + LIIV KL +GFDE L +++D+ +KG +A+Q I R+ R +K KN C
Sbjct: 723 VLESFALKKNGLIIVVAKLQTGFDEKRLHTLFLDKEIKGIAAIQAISRVDRTAKYKNDCK 782
Query: 1044 IVDF----VNTRREISDAFGQY 1061
IVDF VN + I DAF +
Sbjct: 783 IVDFSYNNVNV-QNIKDAFEHF 803
>gi|48868351|ref|ZP_00321696.1| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Haemophilus influenzae 86-028NP]
Length = 646
Score = 105 bits (261), Expect = 2e-20
Identities = 92/358 (25%), Positives = 169/358 (46%), Gaps = 44/358 (12%)
Query: 657 KNYLIQHAAGSGKSHTIASLITNLYRLL----------EDGKLKYDLILVINDKRHLDYQ 706
K YLIQH+AGSGKS++I L L E + +D ++V+ D+R LD Q
Sbjct: 287 KRYLIQHSAGSGKSNSITWLAYQLIEAYPRNEKAANGREADRPIFDSVIVVTDRRLLDKQ 346
Query: 707 LGSIITQFLKDNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNK 766
L I F + ++ ++ + A L + L + K +++I+T+QKF ++D G + +K
Sbjct: 347 LRDNIKDFSEVKNI--VAPALSSAELRQSLEQGK-KIIITTIQKFPFIVD--GIADLGDK 401
Query: 767 YKSIAIISDDIRSMTNTFSSILN---GETREKN-------------------NITYFCFT 804
++ II + S + + +N G+T + + N +YF FT
Sbjct: 402 QFAV-IIDEAHSSQSGSAHDNMNRAIGKTEDLDAEDVQDLILQTMQSRKMHGNASYFAFT 460
Query: 805 STPKPKALELFGDTRGNLRV-PFHTYSIEKALQDKIVMNCIDHYTTVSILTKVSNDKTSD 863
+TPK LE FG+ + + + PFH YS+++A+++ +++ I +YTT +++ +
Sbjct: 461 ATPKNSTLEKFGEKQADGKFKPFHLYSMKQAIEEGFILDVIANYTTYKSFYEITKSIEDN 520
Query: 864 TFFNDENKSSYHILKHPNNDKKIIQEKSSYIIKHFLKLREQINNDEFNCRAMLVTNSREQ 923
F D K+ + + ++ I K+ ++ HF+ + + M+VT + E
Sbjct: 521 PEF-DSKKAQSRLKAYVERSQQTIDTKAEIMLDHFIYQVFNRKKLKGKAKGMVVTQNIET 579
Query: 924 ILLYKQTLESLVKSLPKNQKFDIIASFAKFSLKKKEKAEYDEKINGSYAEYFSKRNGI 981
+ Y Q L+ L+ + F I +F+ K + EY E +AE +K I
Sbjct: 580 AIRYFQALKHLLAG--RGNPFKIAIAFS--GSKVVDGVEYTEAEMNGFAESETKEFSI 633
>gi|24371976|ref|NP_716018.1| type I restriction-modification system,
R subunit [Shewanella oneidensis MR-1]
gb|AAN53463.1| type I restriction-modification system, R subunit [Shewanella
oneidensis MR-1]
Length = 1033
Score = 97.4 bits (241), Expect = 4e-18
Identities = 102/425 (24%), Positives = 186/425 (43%), Gaps = 53/425 (12%)
Query: 654 KNSKNYLIQHAAGSGKSHTIASLITNLYRLLEDGKLKYDLILVINDKRHLDYQLGSIITQ 713
+ K+ ++ H GSGKS T+ L + R D LK ++ I D+ LD QL S
Sbjct: 329 RKEKSGVVWHTQGSGKSLTMVMLAVKMRR---DPVLKQYKLVFITDRTQLDEQLSSTFRA 385
Query: 714 FLKDNDLTSISHPNTIALLEKILTKAKTRVVISTMQKF---SKVIDTH----GFDHISNK 766
+ +I + ++A L+ +L K + +V + +QKF K + T+ GF +++
Sbjct: 386 AQGE----TIYNAGSVAELKALLKKDSSDLVTAMVQKFLDLEKELSTNNENEGFINLNPS 441
Query: 767 YKSIAIISDDIRSMTNTFSSILNGETREKNNITYFCFTSTPKPKALELFGDTRGNLRVPF 826
K I + + R+ + +N I FT TP K ++ G +
Sbjct: 442 DKIIVLADEAHRTQFGGLAMTINAALPNAPKIG---FTGTPLLKTQKMDKAFGGYI---- 494
Query: 827 HTYSIEKALQDKIVMNCIDHYTTVSILTKVSN---DKTSDTFFNDENKSSYHILKHPNND 883
Y I +A+ D + + Y + T+V+ DK + +F +K +K
Sbjct: 495 DEYKINQAVDDGATVRIL--YEGRQVKTEVAGESLDKLFEAYFGSYSKEEQREIKQKYGV 552
Query: 884 KKIIQEKSSYI-------IKHFLKLREQINNDEFNCRAMLVTNSREQILLYKQTLESLVK 936
++ ++E + I ++H+ R+ I D F +AM+V SR ++K+TL+ L
Sbjct: 553 ERAVREAPARIRWVCMDLLEHY---RKHIQPDGF--KAMIVVGSRHAATIFKKTLDEL-- 605
Query: 937 SLPKNQKFDIIASFAKFSLKKKEKAEYDEKINGSYAEYFSKRNGISEILRNDKKHRVQLI 996
P ++ II+ + DE + + ++ I + + ++ V +
Sbjct: 606 GAPPSEV--IISGYHN-----------DEAYIAVHTDKTKQKKIIQDFTKPLSENPVAFL 652
Query: 997 IVADKLSSGFDEPSLAVMYVDRALKGASAVQTIGRLSRVSKGKNACYIVDFVNTRREISD 1056
IV D L +GFD P VMY+DR L+ + +Q I R++R K +IVD+ + +
Sbjct: 653 IVKDMLLTGFDAPIAQVMYIDRKLQDHTLMQAIARVNRTYAKKECGFIVDYFGLSNHLIE 712
Query: 1057 AFGQY 1061
A +
Sbjct: 713 AMEMF 717
>gi|48782405|ref|ZP_00278934.1| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Burkholderia fungorum LB400]
Length = 1028
Score = 97.1 bits (240), Expect = 5e-18
Identities = 113/470 (24%), Positives = 193/470 (41%), Gaps = 55/470 (11%)
Query: 651 KPVKNSKNYLIQHAAGSGKSHTIASLITNLYRLLEDGKLKYDLILVINDKRHLDYQLGSI 710
+P + K ++ H GSGKS T+ R++++ ++ I+VI D+ LD QL +
Sbjct: 283 RPGASHKGGVVWHTQGSGKSITMTCFAA---RVMQEAAMENPTIVVITDRNDLDGQLFGV 339
Query: 711 IT---QFLKDNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNKY 767
+ L++ + + + + L K+ + +V +T+QKF D + +S++
Sbjct: 340 FSLAQDLLREQPVQAGTRQD---LRAKLANRPSGGIVFATIQKFMPGEDEDTYPVLSDR- 395
Query: 768 KSIAIISDDIRSMTNTFSSILNGETREKN--------------NITYFCFTSTPKPKALE 813
+I +I+D+ F + L G+ ++ N T+ FT TP
Sbjct: 396 NNIVVIADEAHRTQYGFEAQLRGKPGQEKYQVGYAQHLRDALPNATFVAFTGTPVSSEDR 455
Query: 814 LFGDTRGNLRVPFHTYSIEKALQDKIVMNCIDHYTTVSILTKVSN----DKTSDTFFNDE 869
DTR H Y +++A +D + + K + D D DE
Sbjct: 456 ---DTRAVFGEYIHVYDMQQAKEDGATVAIYFESRLAKLSLKAEDLPHIDAEVDELAEDE 512
Query: 870 NKSSYHILKH--PNNDKKIIQEKSSYIIKHFLKLREQINNDEFNCRAMLVTNSREQILLY 927
+S LK +K + E + L + N N +AM+V SRE +
Sbjct: 513 EESQQAKLKSRWAALEKVVGAEPRVAAVAADLVAHFEERNKAQNGKAMVVAMSRE---IC 569
Query: 928 KQTLESLVKSLPKNQKFDIIASFAKFSL--KKKEKAEYDEKINGSYAEYFSKRNGISEIL 985
+ ++K P D K + +KA I Y+ KR E
Sbjct: 570 VHLYDEIIKLRPDWHDPDPEKGAVKIVMTGSASDKALLRPHI---YSGQVKKR---LEKR 623
Query: 986 RNDKKHRVQLIIVADKLSSGFDEPSLAVMYVDRALKGASAVQTIGRLSRVSKGKNACYIV 1045
D ++++IV D +GFD P + +YVD+ +KG + +Q I R++RV K K +V
Sbjct: 624 FKDPADPLRMVIVRDMWLTGFDAPCVHTLYVDKPMKGHNLMQAIARVNRVFKDKQGGLVV 683
Query: 1046 DFVNTRREISDAFGQYWRETCLKGETRKT--------VLELKLNRVLGKL 1087
D++ E+ A +Y T G R T VLE KL+ + G L
Sbjct: 684 DYIGIANELKSALKEY---TASNGRGRPTVDAAEAYSVLEEKLDVLRGML 730
>gi|54030757|ref|ZP_00362893.1| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Polaromonas sp. JS666]
Length = 1034
Score = 96.3 bits (238), Expect = 8e-18
Identities = 114/480 (23%), Positives = 204/480 (41%), Gaps = 64/480 (13%)
Query: 651 KPVKNSKNYLIQHAAGSGKSHTIASLITNLYRLLEDGKLKYDLILVINDKRHLDYQLGSI 710
+P + K ++ H GSGKS T+ R++++ ++ I+VI D+ LD QL +
Sbjct: 283 RPGGSQKGGVVWHTQGSGKSITMTCFAA---RVMQEPAMENPTIVVITDRNDLDGQLFGV 339
Query: 711 IT---QFLKDNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNKY 767
+ L++ + + + L K+ + +V +T+QKF D F +S+++
Sbjct: 340 FSLAQDLLREQPVQVSTRQD---LRAKLANRPSGGIVFATIQKFMPGEDEDTFPMLSDRH 396
Query: 768 KSIAIISDDIRSMTNTFSSILNGETREKN--------------NITYFCFTSTPKPKALE 813
+I +I+D+ F + L G+ +++ N T+ FT TP
Sbjct: 397 -NIVVIADEAHRTQYGFEAKLKGKQGQESYQGGYAQHLRDALPNATFVAFTGTPVSSTDR 455
Query: 814 LFGDTRGNLRVPFHTYSIEKALQDKIVMNCIDHYTTVSILTKVSNDKTS-----DTFFND 868
DTR H Y +++A D + I + + ++ L+ + +D + D D
Sbjct: 456 ---DTRAVFGDYIHIYDMQQAKDDGATV-AIYYESRLAKLSLIESDLSQMDEEVDELAED 511
Query: 869 ENKSSYHILKH--PNNDKKIIQEKSSYIIKHFLKLREQINNDEFNCRAMLVTNSREQIL- 925
+ +S +LK +K + E + L + N +AM+V SR+ +
Sbjct: 512 DEESQQAVLKSRWAALEKVVGAEPRVASVAADLVTHFEERNKAQPGKAMVVAMSRDICVH 571
Query: 926 LYKQTLESLVKSLPKNQKFDIIASFAKFSLKKKEKAEYDEKINGSYAE--------YFSK 977
LY + +VK P D EK + GS ++ Y ++
Sbjct: 572 LYNE----IVKLRPDWHDAD------------PEKGAVKIVMTGSASDKPLLRPHIYSAQ 615
Query: 978 RNGISEILRNDKKHRVQLIIVADKLSSGFDEPSLAVMYVDRALKGASAVQTIGRLSRVSK 1037
E D ++L+IV D +GFD P + +YVD+ +KG + +Q I R++RV K
Sbjct: 616 TKKRLEKRFKDPADPLRLVIVRDMWLTGFDAPCVHTLYVDKPMKGHNLMQAIARVNRVFK 675
Query: 1038 GKNACYIVDFVNTRREISDAFGQYWRETCLKGETRKTVLELKLNRVLG-KLSAIEPLANG 1096
K +VD++ E+ A +Y T KG R TV + VL KL + + +G
Sbjct: 676 DKQGGLVVDYIGIGNELKSAMKEY---TQSKGRGRPTVDAHEAYSVLAEKLDVLRSMLHG 732
>gi|551948|gb|AAA98302.1| unknown [Geobacillus stearothermophilus]
Length = 405
Score = 96.3 bits (238), Expect = 8e-18
Identities = 90/353 (25%), Positives = 167/353 (46%), Gaps = 54/353 (15%)
Query: 655 NSKNYLIQHAAGSGKSHTIASLITNLYRLL-EDGKLKYDLILVINDKRHLDYQLGSIITQ 713
+ +NYLIQH+AGSGKS++IA L +L L ED + + ++V+ D+ LD QL I+
Sbjct: 47 SGENYLIQHSAGSGKSNSIAWLAYHLASLHNEDNESIFTSVIVVTDRTVLDRQLQQTISS 106
Query: 714 FLKDNDLT-SISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNKYKSIAI 772
F L +I T L + K R++I+T+QKF + + + NK A+
Sbjct: 107 FDHTTGLVETIDDKKTSKDLRDAINNGK-RIIITTLQKFPVIYE----EVEVNKGSRFAV 161
Query: 773 ISDDIRS-------------MTNTFSSI-----LNGETREKN------------------ 796
I D+ S + +T ++ L E +
Sbjct: 162 IVDEAHSSQTGKSAKKLKAALADTEEALREYAELEAEIEAEQLDFEDEIVQELLTHGRHK 221
Query: 797 NITYFCFTSTPKPKALELFGDTR--GNLRVPFHTYSIEKALQDKIVMNCIDHYTTVSILT 854
N+++F FT+TPK K LE+FG + G + PFH YS+ +A+++ +++ + +Y T
Sbjct: 222 NLSFFAFTATPKEKTLEMFGTKQPDGTFK-PFHIYSMRQAIEEGFILDVLQNYMTYKTYY 280
Query: 855 KVSNDKTSDTFFNDENKSSYHILKHPNNDKKIIQEKSSYIIKHFLKL-REQINNDEFNCR 913
+++ + TS+ + I ++ + +Q+K++ +++ F + R +I +
Sbjct: 281 RIAKN-TSENPELSTTQGVKAIKRYQSLHPYTLQQKTAIMVEQFRNVTRHKIGG---KAK 336
Query: 914 AMLVTNSREQILLYKQTLESLVKSLPKNQKFDIIASFAKFSLKKKEKAEYDEK 966
AM+VT SR + Y + +K + D++ +F+ + + E EY E+
Sbjct: 337 AMVVTASRLHAVRYFHEFKKYIKEKGYDD-IDVLVAFSGVVIDQNE--EYREE 386
>gi|10954527|ref|NP_044166.1| type I restriction enzyme subunit R
[Methanocaldococcus jannaschii DSM 2661]
gb|AAC37109.1| type I restriction enzyme [Methanocaldococcus jannaschii DSM 2661]
pir||G64514 type I restriction enzyme homolog - Methanococcus jannaschii plasmid
pURB800
sp|Q60295|T1RH_METJA Putative type I restriction enzyme MjaXP R protein
Length = 1042
Score = 95.1 bits (235), Expect = 2e-17
Identities = 104/420 (24%), Positives = 187/420 (43%), Gaps = 53/420 (12%)
Query: 660 LIQHAAGSGKSHTIASLITNLYRLLEDGKLKYDLILVINDKRHLDYQLGSIITQFLKDND 719
++ HA G+GKS T ++ + L+ +L Y L++ + D+ LD QL ++ + + +
Sbjct: 333 IVWHAQGTGKSIT---MLFYAKKALKQKELNYPLLVFLTDRLELDEQLYNVFSSVFSEAE 389
Query: 720 LTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNKYKSIAIISDDIRS 779
+IA L++++ K ++ +T+QKF + + ++++ I I + RS
Sbjct: 390 -----RAESIAELQELIKKTPGGIIFATIQKFGRKSKDEHYPFLTDRNNIIIIADEAHRS 444
Query: 780 MTNTFSSILNGETREKNNITYFCFTSTP---KPKALEL-FGDTRGNLRVPFHTYSIEKAL 835
T + L + N ++ FT+TP K ++ L FGD Y I+KA
Sbjct: 445 HYGTLAQNLR---KAIPNASFLAFTATPIDYKDRSTFLVFGDY-------ISAYPIDKAK 494
Query: 836 QDKIVMNCIDHYTTVSI-----LTKVSNDKTSDTFFND-ENKSS----YHILKHPNNDKK 885
+ +V+ V + + D+ S+ ND E K S + L+ +
Sbjct: 495 RHGVVVPIYYEARLVELHLTNEFIDLEFDEISERVANDPETKESIKEVFAKLEKIMLTED 554
Query: 886 IIQEKSSYIIKHFLKLREQINNDEFNCRAMLVTNSRE-QILLYKQTLESLVKSLPKNQKF 944
+ + S II+HF K + +F+ +AM+VT SR+ + LYK + P K
Sbjct: 555 YLSKVSKDIIEHFNKRLQ-----DFDGKAMVVTISRKVAVELYKW-----ITKQPNAPKI 604
Query: 945 DIIASFAKFSLKKKEKAEYDEKINGSYAEYFSKRNGISEILRNDKKHRVQLIIVADKLSS 1004
++ S K K+ ++ I N E D + ++++IV D +
Sbjct: 605 AVVMS----GNKSKDPEDFHPHIRTKK----ELENLAKEF--KDPESDLKMVIVVDMWLT 654
Query: 1005 GFDEPSLAVMYVDRALKGASAVQTIGRLSRVSKGKNACYIVDFVNTRREISDAFGQYWRE 1064
GFD P L MY + +K S Q I R++RV K K IVD++ ++S + +Y E
Sbjct: 655 GFDVPCLHTMYFLKPMKNHSLAQAIARVNRVFKDKPGGLIVDYIGIADDLSKSLSKYSSE 714
>gi|28868304|ref|NP_790923.1| type I restriction-modification enzyme,
R subunit, putative [Pseudomonas syringae pv. tomato str.
DC3000]
gb|AAO54618.1| type I restriction-modification enzyme, R subunit, putative
[Pseudomonas syringae pv. tomato str. DC3000]
Length = 1040
Score = 93.6 bits (231), Expect = 5e-17
Identities = 120/491 (24%), Positives = 204/491 (41%), Gaps = 74/491 (15%)
Query: 651 KPVKNSKNYLIQHAAGSGKSHTIASLITNLYRLLEDGKLKYDLILVINDKRHLDYQLGSI 710
+P K ++ H GSGKS T+ R+++D ++ I+VI D+ LD QL +
Sbjct: 283 RPGGTHKGGVVWHTQGSGKSITMTCFAA---RVMQDAAMENPTIVVITDRNDLDGQLFGV 339
Query: 711 IT---QFLKDNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNKY 767
+ L++ S + L K+ + +V +T+QKF D F +S++
Sbjct: 340 FSLSHDLLREQPFQVESRGD---LRSKLTNRPSGGIVFATIQKFMPGADEDIFPILSDR- 395
Query: 768 KSIAIISDDIRSMTNTFSSILN---------GETREK-----------NNITYFCFTSTP 807
+I +I+D+ F + L +TR + N T+ FT TP
Sbjct: 396 SNIVVIADEAHRTQYGFGAELKVSEATADTASQTRYQVGYAQHLRDALPNATFVAFTGTP 455
Query: 808 KPKALELFGDTRGNLRVPFHTYSIEKALQDKIVMNCIDHYTTVSILTKVSN----DKTSD 863
DTR H Y +++A +D + + K S D D
Sbjct: 456 VSSEDR---DTRSVFGEYIHIYDMQQATEDGATVAIYYESRLAKLSLKDSELPAIDDQFD 512
Query: 864 TFFNDEN-------KSSYHILKHPNNDKKIIQEKSSYIIKHFLKLREQ-INNDEFNCRAM 915
DE KS + L+ + I+ ++ ++KH + + ++ + +AM
Sbjct: 513 ELAEDEEDDQQSRLKSRWAALEKVVGAEPRIRNVAADLVKHSEERNQGLVSMGQMPGKAM 572
Query: 916 LVTNSREQIL-LYKQTLESLVKSLPKNQKFDIIASFAKFSLKKKEKAEYDEKINGSYAEY 974
+V SRE + LY + I A ++ + EK + GS ++
Sbjct: 573 IVAMSREICVHLYNE----------------ITALRPEWHDEDPEKGAIKVIMTGSASDK 616
Query: 975 FSKRNGI--SEILRNDKKH------RVQLIIVADKLSSGFDEPSLAVMYVDRALKGASAV 1026
S R I +I R +K ++L+IV D +GFD P + +YVD+ +KG + +
Sbjct: 617 ASLRPHIYSGQIKRRLEKRFKDPLDPLKLVIVRDMWLTGFDAPCVHTLYVDKPMKGHNLM 676
Query: 1027 QTIGRLSRVSKGKNACYIVDFVNTRREISDAFGQYWRETCLKGETRKTVLELKLNRVL-G 1085
Q I R++RV K K +VD++ E+ A +Y T KG+ R TV + VL
Sbjct: 677 QAIARVNRVFKDKQGGLVVDYIGIANELKAALKEY---TGSKGKGRPTVDAHEAYSVLEE 733
Query: 1086 KLSAIEPLANG 1096
KL + L +G
Sbjct: 734 KLDVLRSLLHG 744
>gi|19919302|gb|AAM08232.1| putative type I restriction enzyme
[Legionella pneumophila]
Length = 1090
Score = 90.9 bits (224), Expect = 3e-16
Identities = 105/434 (24%), Positives = 186/434 (42%), Gaps = 72/434 (16%)
Query: 660 LIQHAAGSGKSHTIASLITNLYRLLEDGKLKYDLILVINDKRHLDYQLGSIITQFLKDND 719
+I H GSGKS T+ L L +L D LK I+V+ D+ L+ QL + + +
Sbjct: 340 VIWHTTGSGKSLTMVFLSRAL--ILHDS-LKQCRIVVVTDRVDLERQLSNTFHSGGEFSG 396
Query: 720 LTSISHPNTIA--LLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNKYKSIAIISDDI 777
T S+ + L + ++K RV+ S +QKF+ N + I ++ D+
Sbjct: 397 KTEFSNAKATSGRRLAEQISKGTERVIFSLIQKFNTAAK---LPQCKNLSRDIVVLVDEG 453
Query: 778 RSMTNTFSSILNGETREKNNITYFCFTSTP---KPKALELFGDTRGNLRVPFHTYSIEKA 834
+ I + N + FT TP + K FG H Y+I++A
Sbjct: 454 HRSQGGENYIRMKQALP--NAAFIAFTGTPLLKEDKTTNKFGSI-------IHAYTIQRA 504
Query: 835 LQDKIVMNCIDHYTTVSILTKVSNDKTSDTFF-------NDEN----KSSYHILKHPNND 883
++DK+V + ++ ND+ D++F +DE K Y
Sbjct: 505 VEDKMVTPLLYEERRPELMV---NDRAIDSWFERITEELSDEQRADLKKKYAKKGEIYRS 561
Query: 884 KKIIQEKSSYIIKHFLKLREQINNDEFNCRAMLVTNSREQILLYKQTLE-------SLVK 936
+ I+ + I HF+K N DE + L +S+ + YK+ L+ ++V
Sbjct: 562 ENRIELVALDIAHHFVK-----NIDE-GLKGQLACDSKLSAIRYKKYLDDVGLFESAVVM 615
Query: 937 SLPKNQ---------KFDIIASFAKFSLKKKEKAEYDEKINGSYAEYFSKRNGISEILRN 987
S P + K + + K ++ +E+ EY ++ +A N
Sbjct: 616 SPPDTREGNTEVDESKIPEVTKWWKDNVGNQEEREYTRQVIERFA--------------N 661
Query: 988 DKKHRVQLIIVADKLSSGFDEPSLAVMYVDRALKGASAVQTIGRLSRVSKGKNACYIVDF 1047
D+ +++IIV DKL +GFDEP V+Y+D+ LK + +Q I R++R+ + K ++D+
Sbjct: 662 DED--LKIIIVVDKLLTGFDEPRNTVLYIDKQLKEHNLIQAIARVNRLHEKKKFGLLIDY 719
Query: 1048 VNTRREISDAFGQY 1061
+E+ +Y
Sbjct: 720 RGILKELDTTIAKY 733
>gi|49658900|emb|CAF28526.1| hsdr-like Type I restriction enzyme
[Yersinia pseudotuberculosis]
Length = 1043
Score = 89.7 bits (221), Expect = 7e-16
Identities = 106/459 (23%), Positives = 192/459 (41%), Gaps = 67/459 (14%)
Query: 650 IKPVKNSKNYLIQHAAGSGKSHTIASLITNLYRLLEDGKLKYDLILVINDKRHLDYQLGS 709
IKP + K ++ H GSGKS S+ +LL+ ++ I+V+ D+ LD G
Sbjct: 294 IKP-GSKKAGVVWHTQGSGKS---ISMCCYAGKLLQQAEMNNPTIVVVTDRNDLD---GQ 346
Query: 710 IITQFLKDNDLTSISHP---NTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNK 766
+ T F + DL N L E + + ++ +T+QKF+ +D N
Sbjct: 347 LYTTFCQAKDLLKQEPQQASNRDQLREMLAARESGGIIFTTVQKFAP-LDGEQAHPALNL 405
Query: 767 YKSIAIISDDIRSMTNTFSSILNGETREKN-----------NITYFCFTSTPKPKALELF 815
+I +ISD+ S+ L+ + K N ++ FT TP +
Sbjct: 406 RDNIVVISDEAHRSQYGLSATLDKDGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDK-- 463
Query: 816 GDTRGNLRVPFHTYSIEKALQD----------KIVMNCIDHYTTVSILTKVSN-DKTSDT 864
DTR Y I+ A+ D ++ ++H ++ ++V + + +T
Sbjct: 464 -DTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSSQVDDLVEDEET 522
Query: 865 FFNDENKSSYHILKHPNNDKKIIQEKSSYIIKHFLKLREQINNDEFNCRAMLVTNSREQI 924
++ K + L+ + I++ ++ ++KHF N N +AM+V SR+
Sbjct: 523 DQKEKTKGDWSRLEKLVGSEPRIKQVAADLVKHFAA-----RNATMNGKAMIVAMSRD-- 575
Query: 925 LLYKQTLESLVKSLPKNQKFDIIASFAKFSLKKKEKAEYDEKINGSYAE--------YFS 976
+ + +LV P+ D+ EK E + GS ++ Y
Sbjct: 576 -ICVRLYNALVALRPEWHSEDV------------EKGEIKIIMTGSASDKEHLQPHIYNK 622
Query: 977 KRNGISEILRNDKKHRVQLIIVADKLSSGFDEPSLAVMYVDRALKGASAVQTIGRLSRVS 1036
+ E D ++++IV D +GFD P MY+D+ ++G + +Q I R++RV
Sbjct: 623 QTKKRLEARFKDLNDPLKIVIVRDMWLTGFDAPCCHTMYIDKPMRGHNLMQAIARVNRVF 682
Query: 1037 KGKNACYIVDFVNTRREISDAFGQYWRETCLKGETRKTV 1075
K K +VD++ E+ A Y T KG+ + T+
Sbjct: 683 KDKPGGLVVDYIGIANELKQALKTY---TDSKGKGQTTI 718
>gi|59713722|ref|YP_206497.1| type I restriction-modification system
restriction subunit [Vibrio fischeri ES114]
gb|AAW87609.1| type I restriction-modification system restriction subunit [Vibrio
fischeri ES114]
Length = 997
Score = 87.0 bits (214), Expect = 5e-15
Identities = 101/409 (24%), Positives = 174/409 (41%), Gaps = 57/409 (13%)
Query: 657 KNYLIQHAAGSGKSHTIASLITNLYRLLEDGKLKYDLILVINDKRHLDYQLGSIITQFLK 716
K LI H GSGKS ++ +L +LK ++V+ D+ LD Q+
Sbjct: 311 KKGLIWHFQGSGKS---LLMVFAAQKLRRTAQLKSPTVIVLVDRTDLDTQISGTFNAA-- 365
Query: 717 DNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNKYKSIAIISDD 776
D+ ++ ++I L+++L + +++IS + KF N ++I ++ D+
Sbjct: 366 --DVANVESTDSIKELQRMLERDTRKIIISMIHKFRDAKPN------MNTRENIIVLVDE 417
Query: 777 IRSMTNTFSSILNGETREK-NNITYFCFTSTPKPKALE----LFG---DTRGNL-RVPFH 827
T L + R N F T TP KA + FG D G + R FH
Sbjct: 418 AH---RTQEGDLGRQMRAALPNAFLFGLTGTPVNKADKNTFWAFGAEEDKGGYMSRYTFH 474
Query: 828 -TYSIEKALQDKIVMNCIDHYTTVSILTKVSNDKTSDTFFNDENKSSYH--------ILK 878
+ E L +D + L K D +DE + + LK
Sbjct: 475 DSIRDEATLPLHFEPRLVDVHVDKEALDKAFKDFKESAALSDEEADALNQKSAKMSAFLK 534
Query: 879 HPNNDKKIIQEKSSYIIKHFLKLREQINNDEFNCRAMLVTNSREQILLYKQTLESLVKSL 938
P +KI+++ I HF+ +++ F +AM+VT RE + YK+ L+ K
Sbjct: 535 SPERVEKIVED----IAIHFM---DKVEPHGF--KAMVVTPDREACVQYKEELD---KHF 582
Query: 939 PKNQKFDIIASFAKFSLKKKEKAEYDEKINGSYAEYFSKRNGISEILRNDKKHRVQLIIV 998
P++ +I++ A + K+K D+ + F ND+K ++ ++V
Sbjct: 583 PESASKVVISTSANDDFEFKQKWGVDKSQQEKLVDEF-----------NDEKSDLKFLVV 631
Query: 999 ADKLSSGFDEPSLAVMYVDRALKGASAVQTIGRLSRVSKGKNACYIVDF 1047
KL +GFD P MY+D+++K + +Q I R +R+ K IVD+
Sbjct: 632 TAKLLTGFDAPICQTMYLDKSIKDHTLLQAICRTNRLYPNKTFGCIVDY 680
>gi|48868205|ref|ZP_00321573.1| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Haemophilus influenzae 86-028NP]
Length = 1027
Score = 86.7 bits (213), Expect = 6e-15
Identities = 102/436 (23%), Positives = 181/436 (41%), Gaps = 57/436 (13%)
Query: 654 KNSKNYLIQHAAGSGKSHT---IASLITNLYRLLEDGKLKYDLILVINDKRHLDYQLGSI 710
K S Y I H GSGK+ T + L T L + D + + D++ LDYQ
Sbjct: 300 KESGGY-IWHTTGSGKTLTSFKASRLATELDFI--------DKVFFVVDRKDLDYQTMKE 350
Query: 711 ITQFLKDNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNKYKSI 770
+F D S++ + A L++ + K +++++T+QK + ++ + +++S K +
Sbjct: 351 YQRFSPD----SVNGSESTAGLKRNIEKDDNKIIVTTIQKLNNLMKSE--ENLSIYQKQV 404
Query: 771 AIISDDIRSMTNTFSSILNGETREKNNITYFCFTSTPKPKALELFGDTRGNL-RVPFHTY 829
I D+ + F R+ F FT TP L +T ++ H+Y
Sbjct: 405 VFIFDEAHR--SQFGEAQKNLKRKFKKFYQFGFTGTPIFPENALGAETTTSVFGTELHSY 462
Query: 830 SIEKALQD-KIVMNCIDHYTTVSILTKVSNDKTSDTFFNDENKSSYHILKHPNNDKKIIQ 888
I A++D K++ +D+ + +K + E K ++ HP K+I
Sbjct: 463 VITDAIRDDKVLKFKVDYNDVRPQFKALETEKDPEKLTALEQKQAF---LHPERIKEI-- 517
Query: 889 EKSSYIIKHFLKLREQINNDEFNCRAMLVTNSREQILLYKQTLESL------------VK 936
S Y++ +F + ++N AM +S E Y +TL++L +
Sbjct: 518 --SQYLLNNFKQKTHRLNATGKGFNAMFAVSSVEAAKRYYETLQNLQAEQEHPLKIATIF 575
Query: 937 SLPKNQKFDIIA-----SFAKFSLKKKEKAEYDEKINGSYAEYFSKRNGIS--------- 982
S N++ D I +F +L K E+ K Y YF G+
Sbjct: 576 SFAANEEQDAIGDIPDETFEPTALNSTAK-EFLTKAIDDYNHYFGTNYGVDSQSFQNYYR 634
Query: 983 EILRNDKKHRVQLIIVADKLSSGFDEPSLAVMYVDRALKGASAVQTIGRLSRV-SKGKNA 1041
++ + K V L+IV +GFD P+L ++VD+ L+ +Q R +R+ K
Sbjct: 635 DLAKRVKNQEVDLLIVVGMFLTGFDAPTLNTLFVDKNLRYHGLMQAFSRTNRIYDTTKTF 694
Query: 1042 CYIVDFVNTRREISDA 1057
IV F + + DA
Sbjct: 695 GNIVTFRDLEQNTIDA 710
>gi|1685100|gb|AAC44668.1| HSDR
pir||JC5216 type I site-specific deoxyribonuclease (EC 3.1.21.3) Hsd chain R
[validated] - Pasteurella haemolytica
Length = 1055
Score = 86.3 bits (212), Expect = 8e-15
Identities = 102/430 (23%), Positives = 182/430 (41%), Gaps = 50/430 (11%)
Query: 655 NSKNYLIQHAAGSGKSHTIASLITNLYRLLEDGKLKYDLILVINDKRHLDYQLGSIITQF 714
N K + H GSGKS S++ ++L LK ++++ D+ LD QL +
Sbjct: 291 NRKIGVFWHTQGSGKS---LSMLFYAGKVLSQSSLKNPTLVLVTDRNDLDGQLYATFCGG 347
Query: 715 LKDNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNKYKSIAIIS 774
T I L + +++ V+ +T+QKF +++ + N+ ++I +I+
Sbjct: 348 EALLKQTPIQADGRDELRSALASRSAGGVIFTTIQKFG-LMEGELAHPVLNERENIIVIT 406
Query: 775 DDIRSMTNTFSSILN--GETREKN---------NITYFCFTSTPKPKALELFG-DTRGNL 822
D+ FS +N GE RE N ++ FT TP +EL DT+
Sbjct: 407 DEAHRSQYGFSQKINHKGEYREGYAKHLRSALPNASFIGFTGTP----IELDDKDTQEVF 462
Query: 823 RVPFHTYSIEKALQDKIVMNCIDHYTTVSI-----LTKVSNDKTSDTFFNDENKSSYHIL 877
Y E A++D + I +S+ +KV ++ +DEN ++ +
Sbjct: 463 GKYVSIYDFEDAVEDGATVPIIYEPRQISLGESGEFSKVM-EEAQQLIDDDENSYNFRLR 521
Query: 878 KHPNNDKKIIQEKSSYIIKHFLKLREQINNDEFNCRAMLVTNSREQILLYKQTLESLVKS 937
+ ++ +Q+ + II H+ + +Q + +AM+V SR + + E +
Sbjct: 522 EKLHSVDSRLQKMAEDIIAHYDERTKQQDG-----KAMVVVMSRA---ICVKLYEKITAL 573
Query: 938 LPKNQKFDIIASFAKFSLKKKEKAEYDEKINGSYAEYFSKRNGISEILRN---DKKHRVQ 994
P+ D++ K + N S + K N + L D +
Sbjct: 574 RPEWHSNDVLQGSIKIVMTS----------NASDPAEWQKHNQDKKTLEKRFKDPDDPLN 623
Query: 995 LIIVADKLSSGFDEPSLAVMYVDRALKGASAVQTIGRLSRVSKGK---NACYIVDFVNTR 1051
++IV D +GFD P MY+D+ + G + +Q I R++RV + K N IVD+V
Sbjct: 624 IVIVRDMWLTGFDAPCCNTMYIDKPMSGHNLMQAIARVNRVFRNKSRENGGLIVDYVGLT 683
Query: 1052 REISDAFGQY 1061
E+ A QY
Sbjct: 684 DELEKAMKQY 693
>gi|42630520|ref|ZP_00156059.1| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Haemophilus influenzae R2866]
Length = 1027
Score = 85.9 bits (211), Expect = 1e-14
Identities = 102/436 (23%), Positives = 181/436 (41%), Gaps = 57/436 (13%)
Query: 654 KNSKNYLIQHAAGSGKSHT---IASLITNLYRLLEDGKLKYDLILVINDKRHLDYQLGSI 710
K S Y I H GSGK+ T + L T L + D + + D++ LDYQ
Sbjct: 300 KESGGY-IWHTTGSGKTLTSFKASRLATELDFI--------DKVFFVVDRKDLDYQTMKE 350
Query: 711 ITQFLKDNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNKYKSI 770
+F D S++ + A L++ + K +++++T+QK + ++ + +++S K +
Sbjct: 351 YQRFSPD----SVNGSESTAGLKRNIEKDDNKIIVTTIQKLNNLMKSE--ENLSIYQKQV 404
Query: 771 AIISDDIRSMTNTFSSILNGETREKNNITYFCFTSTPKPKALELFGDTRGNL-RVPFHTY 829
I D+ + F R+ F FT TP L +T ++ H+Y
Sbjct: 405 VFIFDEAHR--SQFGEAQKNLKRKFKKFYQFGFTGTPIFPENALGAETTISVFGTELHSY 462
Query: 830 SIEKALQD-KIVMNCIDHYTTVSILTKVSNDKTSDTFFNDENKSSYHILKHPNNDKKIIQ 888
I A++D K++ +D+ + +K + E K ++ HP K+I
Sbjct: 463 VITDAIRDDKVLKFKVDYNDVRPQFKALETEKDPEKLTALEQKQAF---LHPERIKEI-- 517
Query: 889 EKSSYIIKHFLKLREQINNDEFNCRAMLVTNSREQILLYKQTLESL------------VK 936
S Y++ +F + ++N AM +S E Y +TL++L +
Sbjct: 518 --SQYLLNNFKQKTHRLNATGKGFNAMFAVSSVEAAKRYYETLQNLQAEQEHPLKIATIF 575
Query: 937 SLPKNQKFDIIA-----SFAKFSLKKKEKAEYDEKINGSYAEYFSKRNGIS--------- 982
S N++ D I +F +L K E+ K Y YF G+
Sbjct: 576 SFAANEEQDAIGDIPDETFEPTALNSTAK-EFLTKAIDDYNHYFGTNYGVDSQSFQNYYR 634
Query: 983 EILRNDKKHRVQLIIVADKLSSGFDEPSLAVMYVDRALKGASAVQTIGRLSRV-SKGKNA 1041
++ + K V L+IV +GFD P+L ++VD+ L+ +Q R +R+ K
Sbjct: 635 DLAKRVKNQEVDLLIVVGMFLTGFDAPTLNTLFVDKNLRYHGLMQAFSRTNRIYDTTKTF 694
Query: 1042 CYIVDFVNTRREISDA 1057
IV F + + DA
Sbjct: 695 GNIVTFRDLEQNTIDA 710
>gi|52082593|ref|YP_081384.1| putative Type I site-specific
deoxyribonuclease HsdR [Bacillus licheniformis ATCC
14580]
ref|YP_093820.1| hypothetical protein BLi04315 [Bacillus licheniformis ATCC 14580]
gb|AAU25746.1| putative Type I site-specific deoxyribonuclease HsdR [Bacillus
licheniformis ATCC 14580]
gb|AAU43127.1| putative protein [Bacillus licheniformis DSM 13]
Length = 1035
Score = 85.5 bits (210), Expect = 1e-14
Identities = 110/438 (25%), Positives = 185/438 (42%), Gaps = 73/438 (16%)
Query: 655 NSKNYLIQHAAGSGKSHTIASLITNLYRLLEDGKLKYDLILVINDKRHLDYQLGSIITQF 714
N ++ +I H GSGKS T+ L + L D K I+V+ D+ LD Q+
Sbjct: 302 NRQSGVIWHTQGSGKSLTMVMLARYILSELNDYHPK---IIVVTDRVELDKQIHKTFNHT 358
Query: 715 -LKDNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNKYKSIAII 773
LK + TS SH + L K +++T+ H FD S K + I
Sbjct: 359 RLKASRATSGSHLVS-------LIKDGNADIVTTL--------VHKFDTASTKQQPIE-- 401
Query: 774 SDDIRSMTNTFSSILNGETREKN-----NITYFCFTSTPKPKALELFGDTRGNLRVPFHT 828
S DI + + GE K N Y FT TP K + G L H
Sbjct: 402 SRDIFVLVDESHRSQYGELHIKMRKVFPNACYLGFTGTPLMKKEKSTMIKFGKL---IHK 458
Query: 829 YSIEKALQDKIVM---------------NCIDHYTTVSILTKVSNDKTSDTFFNDENKSS 873
Y+I ++D+ ++ ID+ +S++T+ NDK D K
Sbjct: 459 YTIADGVKDRAIVPLLYEGKMVDQTVNKTAIDN--RLSMITRHLNDKQKDEVM----KKW 512
Query: 874 YHILKHPNNDKKIIQEKSSYIIKHFLKLREQINNDEFNCRAMLVTNSREQILLYKQTLES 933
H + ++D++I I HF + + +F +AML TNS+ + + Y + E
Sbjct: 513 SHFERIASSDQRISMVAFD-INDHFYR-NYKTQGSQF--KAMLATNSKMEAIRYLEAFEE 568
Query: 934 LVKSLPKNQKFDIIASFAKFSLKKKEKAE-YDEKINGSYAEYFSK---RNGISEILRNDK 989
L D+ + ++E + DE+ N ++ + R G +E +
Sbjct: 569 LG---------DLNCAVVISPPDQREGHDAIDEESNDKIQRFWQRMMNRYGTAEDYEDAI 619
Query: 990 KHR------VQLIIVADKLSSGFDEPSLAVMYVDRALKGASAVQTIGRLSRVSKGKNACY 1043
K + L+IV DKL +GFD P +++Y+D+ +K + +Q I R++R+ +GK+
Sbjct: 620 KDEFIHGDDIDLLIVVDKLLTGFDAPRASILYIDKPMKEHTLLQAIARVNRLYEGKDYGL 679
Query: 1044 IVDFVNTRREISDAFGQY 1061
I+D+ ++ +A Y
Sbjct: 680 IIDYRGLLSKLDEALQMY 697
>gi|47459118|ref|YP_015980.1| type I restriction enzyme r protein
[Mycoplasma mobile 163K]
gb|AAT27769.1| type I restriction enzyme r protein [Mycoplasma mobile 163K]
Length = 880
Score = 85.5 bits (210), Expect = 1e-14
Identities = 107/442 (24%), Positives = 183/442 (41%), Gaps = 65/442 (14%)
Query: 661 IQHAAGSGKSHTIASLITNLYRLLEDGKLKYDLILVINDKRHLDYQLGSIITQFLKDNDL 720
I H GSGK+ T +L++ D +L I D++ LDYQ +F K++
Sbjct: 181 IWHTTGSGKTLTSFKTAQIASKLVD-----IDKVLFIVDRKDLDYQTMREYDKFKKNS-- 233
Query: 721 TSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNKYKSIAIISDDIRSM 780
+ S+ NT L E+ L + ++++I+T+QK S+ + + I K I I D+
Sbjct: 234 -ADSNTNTKILKEQ-LESSDSKIIITTIQKLSRFVAMNKNHEIFKK--RIVFIFDECHR- 288
Query: 781 TNTFSSILNGETREKNNITYFCFTSTP------KPKALELFGDTRGNLRVPFHTYSIEKA 834
+ F ++ N T N F FT TP K + T + HTY+I A
Sbjct: 289 -SQFGNMHNQITNSFKNYNLFGFTGTPIFSINAKSGHTAISKTTEESFGDKLHTYTIVDA 347
Query: 835 LQDKIVMNC-IDHYTTVSILTKVSNDKTSDTFFNDENKSSYHILKHPNNDKKIIQEKSSY 893
+ D V+ ID++ T + K+ D+N S I K N ++I + Y
Sbjct: 348 ISDNNVLKFKIDYFNTFKMSEKIE----------DKNILSIDIEKVVNAPERITSI-TKY 396
Query: 894 IIKHFLKLREQINNDEFNCRAM------------LVTNSREQILLYKQTLESLVK-SLPK 940
I++HF + ++ +N F + + V + + L Y + + + K PK
Sbjct: 397 ILEHFDQKTKRFDNYYFENKNLKEKKLQGFNSIFAVQSIKSAKLFYAEFKKQMTKIDHPK 456
Query: 941 NQKFDIIASF---------AKFSLKKKEKAEYD--EKINGSYAEYFSK---------RNG 980
I SF F +K+ D +++ Y + F + +N
Sbjct: 457 KLNIATIFSFNPNEEILDEEDFETNNLDKSSRDFLDEVIKDYNQTFKQNFDTSSEKFQNY 516
Query: 981 ISEILRNDKKHRVQLIIVADKLSSGFDEPSLAVMYVDRALKGASAVQTIGRLSRVSKG-K 1039
+I K + L+IV + +GFD +L ++VD+ LK +Q R +R+ K
Sbjct: 517 YKDISLKMKNREIDLLIVVNMFLTGFDSQTLNTLWVDKNLKHHGLIQAFSRTNRILNSIK 576
Query: 1040 NACYIVDFVNTRREISDAFGQY 1061
IV F + +E +A Y
Sbjct: 577 TFGNIVCFRDLSKETDEALSLY 598
>gi|46128931|ref|ZP_00154665.2| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Haemophilus influenzae R2846]
Length = 1027
Score = 85.1 bits (209), Expect = 2e-14
Identities = 99/429 (23%), Positives = 178/429 (41%), Gaps = 56/429 (13%)
Query: 661 IQHAAGSGKSHT---IASLITNLYRLLEDGKLKYDLILVINDKRHLDYQLGSIITQFLKD 717
I H GSGK+ T + L T L + D + + D++ LDYQ +F D
Sbjct: 306 IWHTTGSGKTLTSFKASRLATELDFI--------DKVFFVVDRKDLDYQTMKEYQRFSPD 357
Query: 718 NDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNKYKSIAIISDDI 777
S++ + A L++ + K +++++T+QK + ++ + +++S K + I D+
Sbjct: 358 ----SVNGSESTAGLKRNIEKDDNKIIVTTIQKLNNLMKSE--ENLSIYQKQVVFIFDEA 411
Query: 778 RSMTNTFSSILNGETREKNNITYFCFTSTPKPKALELFGDTRGNL-RVPFHTYSIEKALQ 836
+ F R+ F FT TP L +T ++ H+Y I A++
Sbjct: 412 HR--SQFGEAQKNLKRKFKKFYQFGFTGTPIFPENALGAETTISVFGTELHSYVITDAIR 469
Query: 837 D-KIVMNCIDHYTTVSILTKVSNDKTSDTFFNDENKSSYHILKHPNNDKKIIQEKSSYII 895
D K++ +D+ + +K + E K ++ HP K+I S Y++
Sbjct: 470 DDKVLKFKVDYNDVRPQFKALETEKDPEKLTALEQKQAF---LHPERIKEI----SQYLL 522
Query: 896 KHFLKLREQINNDEFNCRAMLVTNSREQILLYKQTLESL------------VKSLPKNQK 943
+F + ++N AM +S E Y +TL++L + S N++
Sbjct: 523 NNFKQKTHRLNATGKGFNAMFAVSSVEAAKRYYETLQNLQAEQEHPLKIATIFSFAANEE 582
Query: 944 FDIIA-----SFAKFSLKKKEKAEYDEKINGSYAEYFSKRNGIS---------EILRNDK 989
D I +F +L K E+ K Y YF G+ ++ + K
Sbjct: 583 QDAIGDIPDETFEPTALNSTAK-EFLTKAIDDYNHYFGTNYGVDSQSFQNYYRDLAKRVK 641
Query: 990 KHRVQLIIVADKLSSGFDEPSLAVMYVDRALKGASAVQTIGRLSRV-SKGKNACYIVDFV 1048
V L+IV +GFD P+L ++VD+ L+ +Q R +R+ K IV F
Sbjct: 642 NQEVDLLIVVGMFLTGFDAPTLNTLFVDKNLRYHGLMQAFSRTNRIYDTTKTFGNIVTFR 701
Query: 1049 NTRREISDA 1057
+ + DA
Sbjct: 702 DLEQNTIDA 710
>gi|2411488|gb|AAB70710.1| HsdR [Klebsiella pneumoniae]
pir||T30329 hsdR protein - Klebsiella pneumoniae
Length = 1102
Score = 84.7 bits (208), Expect = 2e-14
Identities = 104/480 (21%), Positives = 208/480 (42%), Gaps = 81/480 (16%)
Query: 651 KPVKNSKNYLIQHAAGSGKSHTIASLITNLYRLLEDGKLKYDLILVINDKRHLDYQLGSI 710
KP + K A G GKS+T+ +T L L++ +++ I++I D+ LD QL +
Sbjct: 314 KPFGDGKGGTYFGATGCGKSYTM-QFLTRL--LMKKRRVRSPTIVLITDRTDLDDQLSAQ 370
Query: 711 ITQ---FLKDNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNKY 767
+ ++ D+ + ++ + L EK+ + V ++T+ KF++ DT + +S +
Sbjct: 371 MCNAKNYIGDDTVVPVTSRDD--LREKLAGRNSGGVFLTTIHKFTE--DT---ELLSGRS 423
Query: 768 KSIAIISDDIRSMTNTFSSIL----NGETREKNNI-----------TYFCFTSTPKPKAL 812
I I + RS N ++ +G R+ TY FT TP +
Sbjct: 424 NIICISDEAHRSQVNLDQKVIVDKESGRVRKTYGFAKYLYDSLPQATYVGFTGTPIDATM 483
Query: 813 ELFGDTRGNLRVPFHTYSIEKALQDKIVMNCIDHYTTVSILTKVSNDKTSDTFFN----- 867
E+FG+ +Y++ +++QD+I + + ++ + + ++
Sbjct: 484 EVFGNI-------VDSYTMTESVQDEITVRIVYEGRAAKVILDTRKLEEVEKYYEECANA 536
Query: 868 -------DENKSSYHILKHPNNDKKIIQEKSSYIIKHFLKLREQINNDEFNCRAMLVTNS 920
DE+K + + D ++ + KH+ K + +AM V S
Sbjct: 537 GTNEWQIDESKKASATMNAILGDDDRLEALAEDFAKHYEKRVNE--GSTVKGKAMFVCAS 594
Query: 921 RE-------QILLYK-------------QTLESLVKSLPKNQKFDIIASFAKFSLKKKEK 960
RE Q+ ++ + E K LP ++ ++ + K +
Sbjct: 595 REIDWDFYRQLKDFRPEWVEVKQAPDDVELTEQEEKELPPSEMVKMVMTRGK-----DDH 649
Query: 961 AEYDEKINGSYAEYFSKRNGISEILRNDKKHRVQLIIVADKLSSGFDEPSLAVMYVDRAL 1020
A+ E + EY R + + +N K + ++ IV D +GFD P L +Y+D+ L
Sbjct: 650 AKLYELLGSK--EY---RKELDKQFKNAKSN-FKIAIVVDMWLTGFDVPELDTIYIDKPL 703
Query: 1021 KGASAVQTIGRLSRVSKGKNACYIVDFVNTRREISDAFGQYWRETCLKGE-TRKTVLELK 1079
+ + +QTI R++R +GK+ +VD++ +R+++ A Y R E +++V+E+K
Sbjct: 704 QKHNLIQTISRVNRKLEGKSKGLVVDYIGIKRQMNQALAMYSRIDATNFEDIQQSVIEVK 763
>gi|52010778|ref|ZP_00338137.1| COG0610: Type I site-specific
restriction-modification system, R (restriction) subunit
and related helicases [Silicibacter sp. TM1040]
Length = 1092
Score = 84.3 bits (207), Expect = 3e-14
Identities = 104/430 (24%), Positives = 176/430 (40%), Gaps = 52/430 (12%)
Query: 657 KNYLIQHAAGSGKSHTIASLITNLYRLLEDGKLKYDLILVINDKRHLDYQL--------- 707
K +I H GSGKS+ + L LL D +L ++++ D+ L+ QL
Sbjct: 338 KGGVIWHTTGSGKSNLMVFLAK---ALLTDPELADCRLIIVTDRVDLEKQLARTFLTGGA 394
Query: 708 -GSIITQFLKDNDLTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNK 766
GS++ KD + + +A + + R++ + +QKF+ + K
Sbjct: 395 FGSVVAT-KKDGENAKVQSGEDLA---QRIGHGNERIIFTLLQKFNS----------ATK 440
Query: 767 YKSIAIISDDIRSMTNTFSSILNGETREKN-----NITYFCFTSTPKPKALELFGDTRGN 821
Y SD + + + GE E+ N + FT TP K TR
Sbjct: 441 YPECKNTSDKLIVLVDEGHRSQGGENHERMRQALPNAAFIAFTGTPLLKK----DKTRNK 496
Query: 822 LRVPFHTYSIEKALQDKIVMNCIDHYTTVSILTKVSN---DKTSDTFFNDENKSSYHILK 878
H Y++ A+ D V + Y L V++ D DTF LK
Sbjct: 497 FGPILHAYTMSDAIADGAVTPLV--YEERKPLLDVNDAAIDAWFDTFTQSMTDKQKSDLK 554
Query: 879 HPNNDKKIIQEKSSYIIKHFLKLREQINND-EFNC---RAMLVTNSREQILLYKQTLES- 933
+ + I I + L + N + +C +A L T+S+ + YK+ L++
Sbjct: 555 KKYSSRGQIYGAEDRIDRIALDIATHFNEHFKQHCPGLKAQLATDSKLSAIRYKEALDAT 614
Query: 934 -LVKSLPKNQKFDIIASFAKFSLKKKEKAE-YDEKINGSYAEYFSKRNGISEILRNDKKH 991
LV S D +K + + + EK G AE + IS+ +
Sbjct: 615 GLVSSAVVISPPDTREGHDDTDDRKTPEVQAWWEKTVGKDAEAYETAV-ISDFGTDGDP- 672
Query: 992 RVQLIIVADKLSSGFDEPSLAVMYVDRALKGASAVQTIGRLSRVSKGKNACYIVDFVNTR 1051
++IV DKL +GFDEP AV+Y+D+ +KG + +Q I R++R+ + K Y++D+
Sbjct: 673 --DILIVVDKLLTGFDEPRNAVLYIDKLIKGHNLLQAIARVNRLHEDKQFGYLIDYRGIL 730
Query: 1052 REISDAFGQY 1061
E+ + Y
Sbjct: 731 AELDTSIKDY 740
>gi|42525030|ref|NP_970410.1| type I restriction-modification system
restriction subunit [Bdellovibrio bacteriovorus HD100]
emb|CAE81064.1| type I restriction-modification system restriction subunit
[Bdellovibrio bacteriovorus HD100]
Length = 1075
Score = 83.2 bits (204), Expect = 7e-14
Identities = 102/427 (23%), Positives = 191/427 (43%), Gaps = 49/427 (11%)
Query: 660 LIQHAAGSGKSHTIASLITNLYRLLEDGKLKYDLILVINDKRHLDYQLGSIITQFLKDND 719
+I H GSGKS+T+ L +L +E K K I+V+ D+ LD Q IT+ +
Sbjct: 338 VIWHTTGSGKSYTMVMLAKSLADAVEF-KSKNAKIIVVTDRVDLDEQ----ITETFEKCG 392
Query: 720 LTSISHPNTIALLEKILTKAKTRVVISTMQKFSKVIDTHGFDHISNKYKSIAIISDDIRS 779
+ + L E I ++ + V+ + + KF V +H ++++ +++ ++ D+
Sbjct: 393 KAPVQAKSGEHLSELIQSRGYS-VLTTIIDKFESVAKSH---KVTDESENVFVLVDEGHR 448
Query: 780 MTNTFSSILNGETREKNNITYFCFTSTPKPKALE---LFGDTRGNLRVPFHTYSIEKALQ 836
+ L T +K + FT TP K + + T H Y++E AL+
Sbjct: 449 SQFGETHALMKNTFKK--AAFIAFTGTPIRKVKKDEAVAKSTEVQFGEFIHKYTMENALE 506
Query: 837 DKIVMNCIDHYTTVSILTKVSNDKTSDTFF-------NDENKSSY--------HILKHPN 881
D V + + N D +F N+E K++ ILK +
Sbjct: 507 DGAVCPIVYEGRMGELN---GNKDQLDRWFDRVTKDLNEEQKAALKKRFSMEEEILKADD 563
Query: 882 NDKKIIQEKSSYIIKHFLKLREQINNDEFNCRAMLVTNSREQILLYKQTLE------SLV 935
+ I + ++ ++F R++ + + L TN++ + L YK+ L+ SLV
Sbjct: 564 RIRAIALDIKNHYRENF---RQEGEPTKDFMKGQLATNTKGEALAYKRYLDEFGIRTSLV 620
Query: 936 KSLPKNQKFDIIASFAKFSLKKKEKAEYDEKINGSYAEYFSKRNGISEILRNDKKHRV-Q 994
S P+ ++ S++ ++ E + + Y S + I+ N KK V +
Sbjct: 621 ISPPEMRE-------GSKSIEDDDRPEVVKFWDECMKRYGSAKKYQDTIIDNFKKDDVPE 673
Query: 995 LIIVADKLSSGFDEPSLAVMYVDRALKGASAVQTIGRLSRVSKGKNACYIVDFVNTRREI 1054
++IV DKL +GFD P AV+Y+D+ LK + +Q I R++R+ K+ ++D+ ++
Sbjct: 674 ILIVVDKLLTGFDAPRNAVLYIDKKLKEHNVLQAIARVNRLYPRKSEGLVIDYRGIFDDM 733
Query: 1055 SDAFGQY 1061
+ A Y
Sbjct: 734 TQAIDFY 740
>gi|1679868|emb|CAA68059.1| Sty SBLI [Salmonella enterica]
Length = 1088
Score = 83.2 bits (204), Expect = 7e-14
Identities = 107/474 (22%), Positives = 201/474 (41%), Gaps = 69/474 (14%)
Query: 651 KPVKNSKN