Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DDB0184280
(2999 letters)
Database: /home/dicty1/resource/WorkingDBs//nr-clean
2,329,665 sequences; 788,375,511 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23130118|ref|ZP_00111937.1| COG0457: FOG: TPR repeat [Nostoc ... 44 0.10
gi|52548588|gb|AAU82437.1| FOG TPR repeat [uncultured archaeon G... 43 0.17
gi|48104301|ref|XP_395748.1| similar to guanosine monophosphate ... 43 0.17
gi|23491012|gb|EAA22651.1| hypothetical protein [Plasmodium yoel... 42 0.30
gi|1673742|gb|AAB95735.1| transcription antitermination factor [... 40 0.86
>gi|23130118|ref|ZP_00111937.1| COG0457: FOG: TPR repeat [Nostoc
punctiforme PCC 73102]
Length = 1188
Score = 43.5 bits (101), Expect = 0.10
Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 18/152 (11%)
Query: 289 EFKKKIEIQLTNIEVKELKGDKLDISKGYYELGLIYQGQQQNILAFNQFSSANKIYQDYK 348
+F ++ +++KE GD +K Y+ LG++ Q Q+Q +A + ++ A KI++D +
Sbjct: 964 QFDVAVDYYNKALKIKEDTGDLYSAAKEYHNLGIVAQEQRQFDVAVDYYNKALKIFEDAE 1023
Query: 349 EDLEFDNGGGGITDCYNDSYELDLYFNLGISSKTMANIFNATEYLKKALEVSNRDKILFQ 408
D Y+ + E Y LG ++ A +Y KAL++ L+
Sbjct: 1024 -------------DLYSAAKE---YHELGNIAQEQRQFDVAVDYYNKALKIFEDAGDLYS 1067
Query: 409 SIQLKILLELGLAYQTSETPIVATKYFEQLLR 440
+ K +LG Q VA Y+ + L+
Sbjct: 1068 A--AKEYHQLGRVAQEQRQFDVAVDYYNKALK 1097
Score = 42.4 bits (98), Expect = 0.23
Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 18/152 (11%)
Query: 289 EFKKKIEIQLTNIEVKELKGDKLDISKGYYELGLIYQGQQQNILAFNQFSSANKIYQDYK 348
+F ++ +++ E GD + Y++LG + Q Q+Q +A + ++ A KI +D
Sbjct: 924 QFDVAVDYYNKALKIYEDAGDLYSAASDYHQLGRVAQEQRQFDVAVDYYNKALKIKED-- 981
Query: 349 EDLEFDNGGGGITDCYNDSYELDLYFNLGISSKTMANIFNATEYLKKALEVSNRDKILFQ 408
D Y+ + E Y NLGI ++ A +Y KAL++ + L+
Sbjct: 982 -----------TGDLYSAAKE---YHNLGIVAQEQRQFDVAVDYYNKALKIFEDAEDLYS 1027
Query: 409 SIQLKILLELGLAYQTSETPIVATKYFEQLLR 440
+ K ELG Q VA Y+ + L+
Sbjct: 1028 A--AKEYHELGNIAQEQRQFDVAVDYYNKALK 1057
>gi|52548588|gb|AAU82437.1| FOG TPR repeat [uncultured archaeon
GZfos17F1]
Length = 933
Score = 42.7 bits (99), Expect = 0.17
Identities = 34/152 (22%), Positives = 69/152 (45%), Gaps = 18/152 (11%)
Query: 289 EFKKKIEIQLTNIEVKELKGDKLDISKGYYELGLIYQGQQQNILAFNQFSSANKIYQDYK 348
E+ IE +++V+E GD+ +++ Y LGL+Y G+ + +A + + KI++ +
Sbjct: 317 EWDLAIEYYEKSMQVEETLGDRHGLAQTYNNLGLVYAGKGEWDIAIEYYEKSMKIFETFG 376
Query: 349 EDLEFDNGGGGITDCYNDSYELDLYFNLGISSKTMANIFNATEYLKKALEVSNRDKILFQ 408
+ G + Y D E D+ A EY KK++++ ++ I +
Sbjct: 377 DRYGLAQTYGNLGLVYADKGERDI----------------AIEYYKKSMKI--KEAIGAR 418
Query: 409 SIQLKILLELGLAYQTSETPIVATKYFEQLLR 440
+ LGL Y +A +Y+E+ ++
Sbjct: 419 HGLAQTYNNLGLVYAGKGEWDLAIEYYEKSMK 450
>gi|48104301|ref|XP_395748.1| similar to guanosine monophosphate
reductase [Apis mellifera]
Length = 589
Score = 42.7 bits (99), Expect = 0.17
Identities = 36/141 (25%), Positives = 65/141 (45%), Gaps = 16/141 (11%)
Query: 301 IEVKELKG-DKLDISKGYYELGLIYQGQQQNILAFNQFSSANKIYQDYKEDLEFDNGGGG 359
+EV LK +++D++K Y E G N N++S A K+Y+ LE+ G
Sbjct: 96 VEVWSLKNHEQIDLAKMYKEKGT-------NYFKANKYSLAIKMYKKITSVLEYGEDFEG 148
Query: 360 ITDCYNDSYELDLYFNLGISSKTMANIFNATEYLKKALEVSNRDKILFQSIQLKILLELG 419
++ L + NL + + N A + +AL++S +++ K L G
Sbjct: 149 DLKIERNNLILSAHLNLALCYLKLDNNVEAKDSCNEALKLSPQNE--------KALFRRG 200
Query: 420 LAYQTSETPIVATKYFEQLLR 440
AY +P +A K F+++L+
Sbjct: 201 QAYLALASPEIAIKDFQEVLK 221
>gi|23491012|gb|EAA22651.1| hypothetical protein [Plasmodium yoelii
yoelii]
Length = 803
Score = 42.0 bits (97), Expect = 0.30
Identities = 52/210 (24%), Positives = 85/210 (39%), Gaps = 10/210 (4%)
Query: 197 ADPTTKTEWDDDFVFNDSSESENKSILTPAVNILSRARSGNPNIQNNSENKISHTITELL 256
AD + K E +D V + ++ NK+ VN N N+ N++NK +T + +
Sbjct: 411 ADHSCKIESHEDLV-TEGADEINKNENDENVNS-KEENDENTNVNVNNDNKSEYT--QSI 466
Query: 257 SLISFGSDIESSFPTPSSTPLANNLPKLLSEIEFKKKIEIQLTNIEVKELKGDKLDI--- 313
SF SDI P NN+P +S F+K +IQ E+ + D ++I
Sbjct: 467 KEESFDSDINELHNNKIKNPQKNNMPSCISISIFEKINDIQ---NEINSIDDDIINILCK 523
Query: 314 SKGYYELGLIYQGQQQNILAFNQFSSANKIYQDYKEDLEFDNGGGGITDCYNDSYELDLY 373
K L L Y +N AF +K + + + + + +D+Y +
Sbjct: 524 IKQKNSLRLRYTNFYENPCAFIDHVMNSKFPNNMENLSDHNYIYDQSANINDDNYYTLPW 583
Query: 374 FNLGISSKTMANIFNATEYLKKALEVSNRD 403
+ GIS + N + LK L N D
Sbjct: 584 VHRGISKYLLIKNKNIDDVLKSVLNSMNLD 613
>gi|1673742|gb|AAB95735.1| transcription antitermination factor
[Mycoplasma pneumoniae M129]
pir||S73413 transcription antitermination factor nusG - Mycoplasma pneumoniae
(strain ATCC 29342)
sp|P75049|Y067_MYCPN Protein MG054 homolog (D09_orf320)
ref|NP_109755.1| transcription antitermination factor [Mycoplasma pneumoniae M129]
Length = 320
Score = 40.4 bits (93), Expect = 0.86
Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 21/182 (11%)
Query: 262 GSDIESSFPTPSSTPLANNLPKLLSEIEFKKKIEIQLTNIEVKELKGDKLDISKGYYEL- 320
GS + PTP A+NL ++L I K + +TN + E+ DK D K Y L
Sbjct: 122 GSSGRGALPTPLDQADADNLEQMLKGISVNPKKRVLVTNTAIVEMDADKFD-EKCQYILK 180
Query: 321 -------GLIYQGQQQNILAFNQFS----SANKIYQD-YKEDL-----EFDNGGGGITDC 363
+ + I+ NQF+ ANK QD + ED+ E + +
Sbjct: 181 HKQVKPEAIAQVNESGEIIDTNQFAQALMEANKAEQDEWNEDVAIVKSEANKVDPSVLIP 240
Query: 364 YNDSYELDLYFNLGISSKTMANIFNATE-YLKKALEVSNRDKILFQSIQLKILLELGLAY 422
Y YE+ + + + ++ N E +L A+ + + K L+Q K ++E+ L
Sbjct: 241 YLGKYEI-VEGDTKVDQLQQFSVGNLVEVHLTGAIHIQGQIKALYQGTINKAVVEVELTT 299
Query: 423 QT 424
+T
Sbjct: 300 KT 301
Database: /home/dicty1/resource/WorkingDBs//nr-clean
Posted date: Mar 10, 2005 12:10 PM
Number of letters in database: 788,375,511
Number of sequences in database: 2,329,665
Lambda K H
0.318 0.135 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,272,116,877
Number of Sequences: 2329665
Number of extensions: 119430924
Number of successful extensions: 298975
Number of sequences better than 1.0: 5
Number of HSP's better than 1.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 298949
Number of HSP's gapped (non-prelim): 25
length of query: 2999
length of database: 788,375,511
effective HSP length: 146
effective length of query: 2853
effective length of database: 448,244,421
effective search space: 1278841333113
effective search space used: 1278841333113
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 93 (40.4 bits)
BLASTP 2.2.1 [Jul-12-2001]