Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DDB0169405
(546 letters)
Database: /home/dicty1/resource/WorkingDBs//nr-clean
2,329,665 sequences; 788,375,511 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|53711527|ref|YP_097519.1| hypothetical protein BF0236 [Bacter... 81 9e-14
gi|60491222|emb|CAH05970.1| conserved hypothetical protein [Bact... 81 9e-14
gi|26247143|ref|NP_753183.1| hypothetical protein c1269 [Escheri... 72 4e-11
gi|53732839|ref|ZP_00349593.1| COG0790: FOG: TPR repeat, SEL1 su... 72 5e-11
gi|21616268|gb|AAM66156.1| JHP1437-like protein [Helicobacter py... 70 2e-10
gi|21616266|gb|AAM66155.1| JHP1437-like protein [Helicobacter py... 70 2e-10
gi|21616257|gb|AAM66150.1| JHP1437-like protein [Helicobacter py... 70 2e-10
gi|33348985|gb|AAP51657.1| Hsp12 variant C [Helicobacter pylori] 69 3e-10
gi|33348987|gb|AAP51658.1| Hsp12 variant C [Helicobacter pylori] 69 4e-10
gi|33348983|gb|AAP51656.1| Hsp12 variant C [Helicobacter pylori] 69 4e-10
gi|33348975|gb|AAP51652.1| Hsp12 variant C [Helicobacter pylori] 69 4e-10
gi|33348961|gb|AAP51644.1| Hsp12 variant C [Helicobacter pylori] 69 4e-10
gi|33348977|gb|AAP51653.1| Hsp12 variant C [Helicobacter pylori] 68 8e-10
gi|33348966|gb|AAP51647.1| Hsp12 variant C [Helicobacter pylori] 68 8e-10
gi|33348968|gb|AAP51648.1| Hsp12 variant C [Helicobacter pylori] 67 1e-09
gi|21616255|gb|AAM66149.1| JHP1437-like protein [Helicobacter py... 67 2e-09
gi|52842845|ref|YP_096644.1| enhanced entry protein EnhC [Legion... 65 5e-09
gi|54295478|ref|YP_127893.1| enhanced entry protein EnhC [Legion... 64 1e-08
gi|30248264|ref|NP_840334.1| hypothetical protein NE0240 [Nitros... 64 1e-08
gi|32263379|gb|AAP78424.1| conserved hypothetical protein [Helic... 64 1e-08
gi|5305321|gb|AAD41587.1| enhanced entry protein EnhC [Legionell... 62 4e-08
gi|15611386|ref|NP_223037.1| hypothetical protein jhp0318 [Helic... 62 4e-08
gi|46446345|ref|YP_007710.1| hypothetical protein pc0711 [Parach... 60 1e-07
gi|54298628|ref|YP_124997.1| enhanced entry protein EnhC [Legion... 60 1e-07
gi|19069568|emb|CAD25953.1| similarity to SKT5 PROTEIN [Encephal... 57 1e-06
gi|23509684|ref|NP_702351.1| SEL-1 protein, putative [Plasmodium... 56 3e-06
gi|46446348|ref|YP_007713.1| hypothetical protein pc0714 [Parach... 56 3e-06
gi|56544439|gb|AAV90593.1| conserved hypothetical protein [Zymom... 56 3e-06
gi|56542607|gb|AAV88761.1| conserved hypothetical protein [Zymom... 56 3e-06
gi|56413318|ref|YP_150393.1| putative secreted protein [Salmonel... 55 5e-06
gi|52841586|ref|YP_095385.1| TPR repeat protein [Legionella pneu... 55 5e-06
gi|29348810|ref|NP_812313.1| hypothetical protein BT3401 [Bacter... 55 5e-06
gi|16419167|gb|AAL19605.1| putative TPR repeat protein [Salmonel... 55 5e-06
gi|51245889|ref|YP_065773.1| hypothetical protein DP2037 [Desulf... 55 5e-06
gi|47168491|pdb|1OUV|A Chain A, Helicobacter Cysteine Rich Prote... 55 5e-06
gi|2314247|gb|AAD08141.1| conserved hypothetical secreted protei... 55 5e-06
gi|29654443|ref|NP_820135.1| enhanced entry protein EnhC [Coxiel... 55 7e-06
gi|48834353|ref|ZP_00291368.1| COG0790: FOG: TPR repeat, SEL1 su... 55 7e-06
gi|6010740|gb|AAF01236.1| immunoreactive protein [Coxiella burne... 55 7e-06
gi|56542514|gb|AAV88668.1| conserved hypothetical protein [Zymom... 55 7e-06
gi|54295067|ref|YP_127482.1| hypothetical protein lpl2147 [Legio... 54 9e-06
gi|16420289|gb|AAL20675.1| putative TPR repeat protein [Salmonel... 54 9e-06
gi|15612110|ref|NP_223762.1| hypothetical protein jhp1045 [Helic... 54 9e-06
gi|1786864|gb|AAC73745.1| orf, hypothetical protein; conserved h... 54 9e-06
gi|18271675|sp|P77234|YBEQ_ECOLI Hypothetical protein ybeQ 54 9e-06
gi|54297265|ref|YP_123634.1| hypothetical protein lpp1310 [Legio... 54 1e-05
gi|15612089|ref|NP_223741.1| hypothetical protein jhp1024 [Helic... 54 1e-05
gi|50085803|ref|YP_047313.1| conserved hypothetical protein; put... 54 2e-05
gi|54294242|ref|YP_126657.1| hypothetical protein lpl1307 [Legio... 54 2e-05
gi|54298117|ref|YP_124486.1| hypothetical protein lpp2174 [Legio... 53 2e-05
gi|23467940|ref|ZP_00123516.1| COG0790: FOG: TPR repeat, SEL1 su... 53 2e-05
gi|56542603|gb|AAV88757.1| conserved hypothetical protein [Zymom... 53 2e-05
gi|52842435|ref|YP_096234.1| TPR repeat protein, protein-protein... 53 3e-05
gi|52841406|ref|YP_095205.1| TPR repeat protein [Legionella pneu... 53 3e-05
gi|29142103|ref|NP_805445.1| putative secreted protein [Salmonel... 53 3e-05
gi|54297129|ref|YP_123498.1| hypothetical protein lpp1174 [Legio... 53 3e-05
gi|48832230|ref|ZP_00289270.1| COG0790: FOG: TPR repeat, SEL1 su... 53 3e-05
gi|23466584|ref|ZP_00122172.1| COG0790: FOG: TPR repeat, SEL1 su... 53 3e-05
gi|56542496|gb|AAV88650.1| conserved hypothetical protein [Zymom... 53 3e-05
gi|54294116|ref|YP_126531.1| hypothetical protein lpl1180 [Legio... 52 3e-05
gi|56542602|gb|AAV88756.1| conserved hypothetical protein [Zymom... 52 3e-05
gi|17864798|gb|AAL47059.1| JHP318-like protein [Helicobacter pyl... 52 4e-05
gi|23480564|gb|EAA17092.1| hypothetical protein [Plasmodium yoel... 52 4e-05
gi|1840148|gb|AAB47276.1| 29 kDa protein [Helicobacter pylori] 52 6e-05
gi|46446347|ref|YP_007712.1| hypothetical protein pc0713 [Parach... 52 6e-05
gi|32169828|emb|CAD99199.1| hypothetical protein [Mucor circinel... 52 6e-05
gi|46446344|ref|YP_007709.1| hypothetical protein pc0710 [Parach... 51 1e-04
gi|46445788|ref|YP_007153.1| hypothetical protein pc0154 [Parach... 50 1e-04
gi|27358996|gb|AAO07944.1| FOG: TPR repeat protein, SEL1 subfami... 50 2e-04
gi|37677192|ref|NP_937588.1| hypothetical protein VVA1532 [Vibri... 50 2e-04
gi|32477819|ref|NP_870813.1| hypothetical protein RB13005 [Rhodo... 50 2e-04
gi|34859286|ref|XP_230648.2| similar to dJ842G6.2 (novel protein... 50 2e-04
gi|46446343|ref|YP_007708.1| hypothetical protein pc0709 [Parach... 50 2e-04
gi|24112056|ref|NP_706566.1| hypothetical protein SF0637 [Shigel... 49 3e-04
gi|42526681|ref|NP_971779.1| hypothetical protein TDE1171 [Trepo... 49 3e-04
gi|56496764|emb|CAH98145.1| SEL-1 protein, putative [Plasmodium ... 49 3e-04
gi|51712564|ref|XP_130572.3| similar to dJ842G6.2 (novel protein... 49 4e-04
gi|50754826|ref|XP_414519.1| PREDICTED: similar to Protein KIAA0... 49 4e-04
gi|57104392|ref|XP_542886.1| PREDICTED: similar to Sel-1 homolog... 49 5e-04
gi|53728524|ref|ZP_00132481.2| COG0790: FOG: TPR repeat, SEL1 su... 49 5e-04
gi|26251128|ref|NP_757168.1| Putative conserved protein [Escheri... 48 6e-04
gi|17864805|gb|AAL47062.1| JHP318-like protein [Helicobacter pyl... 48 6e-04
gi|50083765|ref|YP_045275.1| hypothetical protein; putative tetr... 47 0.001
gi|56203418|emb|CAI22984.1| C20orf50 [Homo sapiens] >gi|56203947... 47 0.001
gi|56203417|emb|CAI22983.1| C20orf50 [Homo sapiens] >gi|56203946... 47 0.001
gi|41151276|ref|XP_046437.5| PREDICTED: chromosome 20 open readi... 47 0.001
gi|15603476|ref|NP_246550.1| hypothetical protein PM1611 [Pasteu... 47 0.001
gi|48832231|ref|ZP_00289271.1| COG0790: FOG: TPR repeat, SEL1 su... 47 0.002
gi|52841296|ref|YP_095095.1| TPR repeat protein [Legionella pneu... 47 0.002
gi|55651231|ref|XP_525270.1| PREDICTED: similar to Sel-1 homolog... 47 0.002
gi|54293998|ref|YP_126413.1| hypothetical protein lpl1059 [Legio... 46 0.003
gi|48243674|gb|AAT40805.1| putative TPR repeat protein [Haemophi... 46 0.003
gi|56523303|emb|CAH77588.1| SEL-1 protein, putative [Plasmodium ... 46 0.003
gi|46141375|ref|ZP_00146612.2| COG0790: FOG: TPR repeat, SEL1 su... 45 0.004
gi|39997490|ref|NP_953441.1| hypothetical protein GSU2395 [Geoba... 45 0.004
gi|9655672|gb|AAF94353.1| conserved hypothetical protein [Vibrio... 45 0.005
gi|57241416|ref|ZP_00369362.1| conserved hypothetical secreted p... 45 0.005
gi|8671775|gb|AAF78381.1| T10O22.22 [Arabidopsis thaliana] >gi|1... 45 0.007
gi|23004703|ref|ZP_00047899.1| COG0790: FOG: TPR repeat, SEL1 su... 44 0.009
gi|38344482|emb|CAE05497.2| OSJNBa0022H21.17 [Oryza sativa (japo... 44 0.009
gi|30249930|ref|NP_842000.1| hypothetical protein NE1983 [Nitros... 44 0.009
gi|42631604|ref|ZP_00157142.1| COG0790: FOG: TPR repeat, SEL1 su... 44 0.009
gi|56542538|gb|AAV88692.1| conserved hypothetical protein [Zymom... 44 0.009
gi|56542499|gb|AAV88653.1| conserved hypothetical protein [Zymom... 44 0.009
gi|42544406|gb|EAA67249.1| hypothetical protein FG00909.1 [Gibbe... 44 0.012
gi|45441640|ref|NP_993179.1| hypothetical protein YP1836 [Yersin... 44 0.016
gi|16122231|ref|NP_405544.1| hypothetical protein YPO1989 [Yersi... 44 0.016
gi|51244078|ref|YP_063962.1| similar to TPR repeat proteins [Des... 44 0.016
gi|56542606|gb|AAV88760.1| conserved hypothetical protein [Zymom... 44 0.016
gi|48832970|ref|ZP_00289995.1| COG0790: FOG: TPR repeat, SEL1 su... 43 0.021
gi|7226570|gb|AAF41702.1| conserved hypothetical protein [Neisse... 43 0.021
gi|55818902|ref|YP_142375.1| unknown [Acanthomoeba polyphaga mim... 43 0.021
gi|12513548|gb|AAG54978.1| orf; Unknown function [Escherichia co... 43 0.021
gi|51596307|ref|YP_070498.1| hypothetical protein YPTB1981 [Yers... 43 0.027
gi|48102683|ref|XP_392802.1| similar to ENSANGP00000019196 [Apis... 43 0.027
gi|7225642|gb|AAF40857.1| conserved hypothetical protein [Neisse... 42 0.035
gi|54638372|gb|EAL27774.1| GA10167-PA [Drosophila pseudoobscura] 42 0.035
gi|27464486|gb|AAO16102.1| Bpf001 [Haemophilus influenzae biotyp... 42 0.035
gi|5852329|gb|AAD54009.1| hypothetical protein [Vogesella indigo... 42 0.035
gi|53734405|gb|AAH83893.1| Unknown (protein for MGC:95231) [Ratt... 42 0.046
gi|57168442|ref|ZP_00367576.1| conserved hypothetical secreted p... 42 0.060
gi|55243175|gb|EAA06387.2| ENSANGP00000019196 [Anopheles gambiae... 41 0.079
gi|3877099|emb|CAB01505.1| Hypothetical protein F45D3.5 [Caenorh... 41 0.079
gi|7380182|emb|CAB84768.1| hypothetical protein [Neisseria menin... 41 0.079
gi|1255199|gb|AAC47112.1| sel-1 gene product 41 0.079
gi|17864808|gb|AAL47063.1| JHP1024-like protein [Helicobacter py... 41 0.079
gi|26248017|ref|NP_754057.1| hypothetical protein c2163 [Escheri... 41 0.10
gi|48833833|ref|ZP_00290849.1| COG0790: FOG: TPR repeat, SEL1 su... 41 0.10
gi|49652420|emb|CAG84717.1| unnamed protein product [Debaryomyce... 41 0.10
gi|2314269|gb|AAD08161.1| conserved hypothetical secreted protei... 41 0.10
gi|33348948|gb|AAP51638.1| Hsp12 variant C [Helicobacter pylori] 40 0.13
gi|33348959|gb|AAP51643.1| Hsp12 variant C [Helicobacter pylori] 40 0.18
gi|33348957|gb|AAP51642.1| Hsp12 variant C [Helicobacter pylori] 40 0.18
gi|33348955|gb|AAP51641.1| Hsp12 variant C [Helicobacter pylori] 40 0.18
gi|33348951|gb|AAP51639.1| Hsp12 variant C [Helicobacter pylori] 40 0.18
gi|33348944|gb|AAP51636.1| Hsp12 variant C [Helicobacter pylori] 40 0.18
gi|33348942|gb|AAP51635.1| Hsp12 variant C [Helicobacter pylori] 40 0.18
gi|46447295|ref|YP_008660.1| hypothetical protein pc1661 [Parach... 40 0.18
gi|17864800|gb|AAL47060.1| JHP318-like protein [Helicobacter pyl... 40 0.18
gi|48833834|ref|ZP_00290850.1| COG0790: FOG: TPR repeat, SEL1 su... 40 0.23
gi|21355295|ref|NP_651179.1| CG10221-PA [Drosophila melanogaster... 40 0.23
gi|4107282|emb|CAA22651.1| SPCC417.05c [Schizosaccharomyces pomb... 40 0.23
gi|56494779|emb|CAH99339.1| conserved hypothetical protein [Plas... 40 0.23
gi|39592291|emb|CAE75512.1| Hypothetical protein CBG23527 [Caeno... 40 0.23
gi|48833497|ref|ZP_00290516.1| COG0790: FOG: TPR repeat, SEL1 su... 39 0.30
gi|48833496|ref|ZP_00290515.1| COG0790: FOG: TPR repeat, SEL1 su... 39 0.30
gi|15611218|ref|NP_222869.1| hypothetical protein jhp0148 [Helic... 39 0.30
gi|2313248|gb|AAD07230.1| conserved hypothetical secreted protei... 39 0.30
gi|52424929|ref|YP_088066.1| hypothetical protein MS0874 [Mannhe... 39 0.39
gi|48832635|ref|ZP_00289666.1| COG0790: FOG: TPR repeat, SEL1 su... 39 0.39
gi|53691437|ref|ZP_00129504.2| COG0790: FOG: TPR repeat, SEL1 su... 39 0.39
gi|23490667|gb|EAA22388.1| hypothetical protein [Plasmodium yoel... 39 0.39
gi|46202593|ref|ZP_00208577.1| COG0790: FOG: TPR repeat, SEL1 su... 39 0.51
gi|46141366|ref|ZP_00146600.2| COG0790: FOG: TPR repeat, SEL1 su... 39 0.51
gi|52007487|ref|ZP_00334865.1| COG0790: FOG: TPR repeat, SEL1 su... 39 0.51
gi|28871917|ref|NP_794536.1| hypothetical protein PSPTO4802 [Pse... 39 0.51
gi|50748562|ref|XP_421303.1| PREDICTED: similar to SEL1L [Gallus... 39 0.51
gi|23466585|ref|ZP_00122173.1| COG0790: FOG: TPR repeat, SEL1 su... 39 0.51
gi|57090315|ref|XP_537530.1| PREDICTED: similar to Sel-1 homolog... 38 0.67
gi|40745086|gb|EAA64242.1| hypothetical protein AN1535.2 [Asperg... 38 0.67
gi|32261691|gb|AAP76741.1| conserved hypothetical protein [Helic... 38 0.67
gi|56207320|emb|CAI20738.1| novel protein similar to vertebrate ... 38 0.67
gi|19923669|ref|NP_005056.3| sel-1 suppressor of lin-12-like [Ho... 38 0.87
gi|37182424|gb|AAQ89014.1| SEL1L [Homo sapiens] 38 0.87
gi|2258461|gb|AAB63298.1| Orf2 [Helicobacter pylori] 38 0.87
gi|55641143|ref|XP_510102.1| PREDICTED: sel-1 suppressor of lin-... 38 0.87
gi|46100397|gb|EAK85630.1| hypothetical protein UM04355.1 [Ustil... 38 0.87
gi|46309573|ref|NP_035474.1| Sel1 (suppressor of lin-12) 1 homol... 38 0.87
gi|60360536|dbj|BAD90512.1| mKIAA4137 protein [Mus musculus] 38 0.87
gi|17646138|gb|AAL40905.1| sel-1 [Homo sapiens] >gi|6851089|gb|A... 38 0.87
gi|42631602|ref|ZP_00157140.1| COG0790: FOG: TPR repeat, SEL1 su... 38 0.87
gi|3252886|gb|AAC24210.1| cysteine-rich protein; HcpA [Helicobac... 38 0.87
gi|13878771|sp|Q9Z2G6|SE1L_MOUSE Sel-1 homolog precursor (Suppre... 38 0.87
gi|9967440|dbj|BAB12403.1| SEL1L [Mesocricetus auratus] 38 0.87
gi|57339622|gb|AAW49798.1| hypothetical protein FTT0369 [synthet... 38 0.87
>gi|53711527|ref|YP_097519.1| hypothetical protein BF0236
[Bacteroides fragilis YCH46]
dbj|BAD46985.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
Length = 832
Score = 80.9 bits (198), Expect = 9e-14
Identities = 63/240 (26%), Positives = 117/240 (48%), Gaps = 26/240 (10%)
Query: 237 NFEKSLKYLTKSAEQNNAKAYFELFNY----YKQQKKDLIKSKYYLLKSAEFIYEDSIIL 292
N ++++Y+TK+AEQN A F++ +Y Y +D ++ + K+ +++
Sbjct: 589 NPHQAVEYMTKAAEQNYGYAQFKMGDYFFFGYGACPEDNKQAVEWYEKAVANDIPLAMLR 648
Query: 293 LGDYY-------------YNGFKTIDNHDDHDDGSGENEELNLICQDY-FKAFNLFKIGA 338
+G+YY ++ FK + +++G G E+ + +D +AF + + A
Sbjct: 649 MGEYYLYDYDKLNESEKAFSYFKKAAEAECYNEGLGICYEMGIGVEDNETEAFKYYTLAA 708
Query: 339 SLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFY 398
+ S+ + G+C+Y G GV +Y EAYR F ++ D+ ++YYLG L Y
Sbjct: 709 GSG-NVMSMYRTGLCYYNGVGVKQNYTEAYRWFNDAAGNDN------VASYYYLGKMLMY 761
Query: 399 GKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTAKSQGS 458
G+G + + G ++ MK+A N E +G +L G G+ +N A +F A G+
Sbjct: 762 GEGCVPDAEAGLQWLMKAAEHNSDKAQFE-LGNAYLMGNGVEENDEIAMEWFEKAAENGN 820
Score = 50.4 bits (119), Expect = 1e-04
Identities = 67/299 (22%), Positives = 119/299 (39%), Gaps = 51/299 (17%)
Query: 203 ENKEFLKKQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAYFELFN 262
++K + +K +E G+ A L ++EK+ L K+A Q A + +
Sbjct: 448 KSKAYYEKAAELGSCFAMVELAFLYENGEVVEQ-SYEKAFDLLQKAAGQEYPYAMYRVGL 506
Query: 263 YYKQQ---KKDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDD----HDDGSG 315
Y + + ++ + K+AE D+I LG Y NG T +N D G+
Sbjct: 507 YLDRGVIGEPRPEEAFAWYAKAAERGDGDAIFALGRCYKNGIGTEENPDKALEWFTKGAE 566
Query: 316 ENE-----ELNL-------ICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTID 363
NE E+ L I ++ +A A N + K+G F++G G +
Sbjct: 567 NNEPRCLTEMGLAYEYGSGIEENPHQAVEYMTKAAEQNY-GYAQFKMGDYFFFGYGACPE 625
Query: 364 YNEAYRLFYQSSIC----------------DHHQEHNPEITFYY-------------LGL 394
N+ +Y+ ++ D+ + + E F Y LG+
Sbjct: 626 DNKQAVEWYEKAVANDIPLAMLRMGEYYLYDYDKLNESEKAFSYFKKAAEAECYNEGLGI 685
Query: 395 CLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTA 453
C G GV N+ + F+Y+ +A + ++ G C+ NG G+ QN+ +A +F A
Sbjct: 686 CYEMGIGVEDNETEAFKYYTLAAGSGNVM-SMYRTGLCYYNGVGVKQNYTEAYRWFNDA 743
>gi|60491222|emb|CAH05970.1| conserved hypothetical protein
[Bacteroides fragilis NCTC 9343]
Length = 832
Score = 80.9 bits (198), Expect = 9e-14
Identities = 63/240 (26%), Positives = 117/240 (48%), Gaps = 26/240 (10%)
Query: 237 NFEKSLKYLTKSAEQNNAKAYFELFNY----YKQQKKDLIKSKYYLLKSAEFIYEDSIIL 292
N ++++Y+TK+AEQN A F++ +Y Y +D ++ + K+ +++
Sbjct: 589 NPHQAVEYMTKAAEQNYGYAQFKMGDYFFFGYGACPEDNKQAVEWYEKAVANDIPLAMLR 648
Query: 293 LGDYY-------------YNGFKTIDNHDDHDDGSGENEELNLICQDY-FKAFNLFKIGA 338
+G+YY ++ FK + +++G G E+ + +D +AF + + A
Sbjct: 649 MGEYYLYDYDKLNESEKAFSYFKKAAEAECYNEGLGICYEMGIGVEDNETEAFKYYTLAA 708
Query: 339 SLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFY 398
+ S+ + G+C+Y G GV +Y EAYR F ++ D+ ++YYLG L Y
Sbjct: 709 GSG-NVMSMYRTGLCYYNGVGVKQNYTEAYRWFNDAAGNDN------VASYYYLGKMLMY 761
Query: 399 GKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTAKSQGS 458
G+G + + G ++ MK+A N E +G +L G G+ +N A +F A G+
Sbjct: 762 GEGCVPDAEAGLQWLMKAAEHNSDKAQFE-LGNAYLMGNGVEENDEIAMEWFEKAAENGN 820
Score = 50.4 bits (119), Expect = 1e-04
Identities = 67/299 (22%), Positives = 119/299 (39%), Gaps = 51/299 (17%)
Query: 203 ENKEFLKKQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAYFELFN 262
++K + +K +E G+ A L ++EK+ L K+A Q A + +
Sbjct: 448 KSKAYYEKAAELGSCFAMVELAFLYENGEVVEQ-SYEKAFDLLQKAAGQEYPYAMYRVGL 506
Query: 263 YYKQQ---KKDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDD----HDDGSG 315
Y + + ++ + K+AE D+I LG Y NG T +N D G+
Sbjct: 507 YLDRGVIGEPRPEEAFAWYAKAAERGDGDAIFALGRCYKNGIGTEENPDKALEWFTKGAE 566
Query: 316 ENE-----ELNL-------ICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTID 363
NE E+ L I ++ +A A N + K+G F++G G +
Sbjct: 567 NNEPRCLTEMGLAYEYGSGIEENPHQAVEYMTKAAEQNY-GYAQFKMGDYFFFGYGACPE 625
Query: 364 YNEAYRLFYQSSIC----------------DHHQEHNPEITFYY-------------LGL 394
N+ +Y+ ++ D+ + + E F Y LG+
Sbjct: 626 DNKQAVEWYEKAVANDIPLAMLRMGEYYLYDYDKLNESEKAFSYFKKAAEAECYNEGLGI 685
Query: 395 CLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTA 453
C G GV N+ + F+Y+ +A + ++ G C+ NG G+ QN+ +A +F A
Sbjct: 686 CYEMGIGVEDNETEAFKYYTLAAGSGNVM-SMYRTGLCYYNGVGVKQNYTEAYRWFNDA 743
>gi|26247143|ref|NP_753183.1| hypothetical protein c1269
[Escherichia coli CFT073]
gb|AAN79743.1| Hypothetical protein [Escherichia coli CFT073]
emb|CAE55733.1| hypothetical protein [Escherichia coli]
Length = 378
Score = 72.0 bits (175), Expect = 4e-11
Identities = 64/247 (25%), Positives = 113/247 (44%), Gaps = 31/247 (12%)
Query: 237 NFEKSLKYLTKSAEQNNAKAYFELFNYYKQQ---KKDLIKSKYYLLKSAEFIYEDSIILL 293
+++ + + K+A QN+ +A L Y + ++D ++K + K+A D+ L
Sbjct: 133 DYQHAKMWYEKAAAQNDERAQVNLAVLYAKGNGVEQDYRQAKSWYEKAAAQNSPDAQFAL 192
Query: 294 GDYYYNGFKTIDNHDDHDDGSGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGIC 353
G Y N N + QDY +A + ++ A N +N+ LG+
Sbjct: 193 GILYANA--------------------NGVEQDYQQAKDWYEKAAEQNF-ANAQFNLGML 231
Query: 354 FYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYF 413
+Y G GV ++ +A F +++ N Y LG +YG+GV ++ + ++F
Sbjct: 232 YYKGEGVKQNFRQAREWFEKAA------SQNQPNAQYNLGQIYYYGQGVTQSYRQAKDWF 285
Query: 414 MKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTAKSQGSNQDRNIQDVNKIIEL 473
K+A H A +G + NGEG+SQN+ QAK ++ A SQ Q + V +
Sbjct: 286 EKAAEKGHVD-AQYNLGVIYENGEGVSQNYQQAKAWYEKAASQNDAQAQFELGVMNELGQ 344
Query: 474 NKSIKIK 480
+SI +K
Sbjct: 345 GESIDLK 351
Score = 41.6 bits (96), Expect = 0.060
Identities = 30/123 (24%), Positives = 61/123 (49%), Gaps = 7/123 (5%)
Query: 338 ASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLF 397
A N D + LG+ + YG + +DY +A +++Y+ + + N LG+
Sbjct: 36 AGENGDVEAQYALGLMYLYGEILDVDYQQA-KIWYEKAA-----DQNDPRAQAKLGVMYA 89
Query: 398 YGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTAKSQG 457
G GV ++ + ++ K+A+ N A +G + +G G+SQ++ AK+++ A +Q
Sbjct: 90 NGLGVNQDYQQSKLWYEKAAAQNDVD-AQFLLGEMYDDGLGVSQDYQHAKMWYEKAAAQN 148
Query: 458 SNQ 460
+
Sbjct: 149 DER 151
>gi|53732839|ref|ZP_00349593.1| COG0790: FOG: TPR repeat, SEL1
subfamily [Haemophilus influenzae R2846]
Length = 348
Score = 71.6 bits (174), Expect = 5e-11
Identities = 68/264 (25%), Positives = 121/264 (45%), Gaps = 32/264 (12%)
Query: 198 KQYNKENKEFLKKQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAY 257
KQ + E ++ +K +E+G + AQ L + E ++K+ ++AEQ NAKA
Sbjct: 63 KQDDFEAVKWYRKAAEQGVADAQLNLGNMYAKGLGVKQDDVE-AVKWYRQAAEQGNAKAQ 121
Query: 258 FELFNYY---KQQKKDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHDDGS 314
F L Y + K+D ++ + K+AE Y D+ LG+ YYNG
Sbjct: 122 FNLGLMYDNGRGVKQDYFEAVKWFRKAAEQGYADAQFNLGNMYYNG-------------- 167
Query: 315 GENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQS 374
+ + QD F+A ++ A +++ LG +Y G GV D EA + + ++
Sbjct: 168 ------HGVKQDDFEAVKWYRKAAEQGY-ADAQFNLGNMYYNGHGVKQDDFEAVKWYRKA 220
Query: 375 SICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFL 434
+ H + Y LG G+GV ++ + +++ K+A Y+ A +G +
Sbjct: 221 AEQGHAKAQ------YNLGNMYANGRGVKQDYFEAVKWYRKAAE-QGYADAQANLGSAYS 273
Query: 435 NGEGISQNFMQAKLYFTTAKSQGS 458
G G+ Q++++A +F A GS
Sbjct: 274 AGHGVRQDYIEAVKWFKKAAENGS 297
Score = 61.2 bits (147), Expect = 7e-08
Identities = 57/240 (23%), Positives = 105/240 (43%), Gaps = 27/240 (11%)
Query: 237 NFEKSLKYLTKSAEQNNAKAYFELFNYYKQQ---KKDLIKSKYYLLKSAEFIYEDSIILL 293
+++ + K AEQ NA F L YK+ K+D ++ + K+AE D+ + L
Sbjct: 29 DYQTAFKLWLPLAEQGNASIQFNLGLMYKKGQGIKQDDFEAVKWYRKAAEQGVADAQLNL 88
Query: 294 GDYYYNGF-------KTIDNHDDHDDGSGENEELNL---------ICQDYFKAFNLFKIG 337
G+ Y G + + + + + NL + QDYF+A F+
Sbjct: 89 GNMYAKGLGVKQDDVEAVKWYRQAAEQGNAKAQFNLGLMYDNGRGVKQDYFEAVKWFRKA 148
Query: 338 ASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLF 397
A +++ LG +Y G GV D EA + + +++ E + LG +
Sbjct: 149 AEQGY-ADAQFNLGNMYYNGHGVKQDDFEAVKWYRKAA------EQGYADAQFNLGNMYY 201
Query: 398 YGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTAKSQG 457
G GV ++ + +++ K+A H + A +G + NG G+ Q++ +A ++ A QG
Sbjct: 202 NGHGVKQDDFEAVKWYRKAAEQGH-AKAQYNLGNMYANGRGVKQDYFEAVKWYRKAAEQG 260
>gi|21616268|gb|AAM66156.1| JHP1437-like protein [Helicobacter
pylori]
Length = 327
Score = 70.1 bits (170), Expect = 2e-10
Identities = 59/212 (27%), Positives = 94/212 (43%), Gaps = 31/212 (14%)
Query: 237 NFEKSLKYLTKSAEQNNAKAYFELFNYYKQQKKDLIKSKY---YLLKSAEFIYEDSIILL 293
+ + +L+Y +KS + NN + +Y K L K K Y K+ E Y D +L
Sbjct: 119 DLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKDKKDLEYYSKACELNYGDGCAIL 178
Query: 294 GDYYYNGFKTIDNHDDHDDGSGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGIC 353
GD Y+NG +G + Q++ KAF + LN + +KLG
Sbjct: 179 GDIYHNG-----------EG---------VTQNFKKAFKYYSKACELN-NGEGCSKLGGD 217
Query: 354 FYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYF 413
+++G VT D +A+ Y S C E N +T +G G+GV K+ K FEY
Sbjct: 218 YFFGESVTQDLKKAFG--YYSKAC----ELNEALTCTLVGEFYRDGEGVTKDLKKAFEYS 271
Query: 414 MKSASLNHYSPALEAVGRCFLNGEGISQNFMQ 445
K+ LN + A+ + G+G+++ Q
Sbjct: 272 AKACELND-AKGCYALAAFYNEGKGVARGEKQ 302
Score = 40.0 bits (92), Expect = 0.18
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 403 LKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTA 453
LK K EY+ K+ LN Y +G + NGEG++QNF +A Y++ A
Sbjct: 153 LKKDKKDLEYYSKACELN-YGDGCAILGDIYHNGEGVTQNFKKAFKYYSKA 202
>gi|21616266|gb|AAM66155.1| JHP1437-like protein [Helicobacter
pylori]
Length = 336
Score = 70.1 bits (170), Expect = 2e-10
Identities = 59/212 (27%), Positives = 94/212 (43%), Gaps = 31/212 (14%)
Query: 237 NFEKSLKYLTKSAEQNNAKAYFELFNYYKQQKKDLIKSKY---YLLKSAEFIYEDSIILL 293
+ + +L+Y +KS + NN + +Y K L K K Y K+ E Y D +L
Sbjct: 119 DLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKDKKDLEYYSKACELNYGDGCAIL 178
Query: 294 GDYYYNGFKTIDNHDDHDDGSGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGIC 353
GD Y+NG +G + Q++ KAF + LN + +KLG
Sbjct: 179 GDIYHNG-----------EG---------VTQNFKKAFKYYSKACELN-NGEGCSKLGGD 217
Query: 354 FYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYF 413
+++G VT D +A+ Y S C E N +T +G G+GV K+ K FEY
Sbjct: 218 YFFGESVTQDLKKAFG--YYSKAC----ELNEALTCTLVGEFYRDGEGVTKDLKKAFEYS 271
Query: 414 MKSASLNHYSPALEAVGRCFLNGEGISQNFMQ 445
K+ LN + ++ F G+G+++ Q
Sbjct: 272 AKACELND-AKGCYSLAAFFNEGKGVARGEKQ 302
Score = 40.0 bits (92), Expect = 0.18
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 403 LKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTA 453
LK K EY+ K+ LN Y +G + NGEG++QNF +A Y++ A
Sbjct: 153 LKKDKKDLEYYSKACELN-YGDGCAILGDIYHNGEGVTQNFKKAFKYYSKA 202
>gi|21616257|gb|AAM66150.1| JHP1437-like protein [Helicobacter
pylori]
Length = 325
Score = 70.1 bits (170), Expect = 2e-10
Identities = 59/212 (27%), Positives = 93/212 (43%), Gaps = 31/212 (14%)
Query: 237 NFEKSLKYLTKSAEQNNAKAYFELFNYYKQQKKDLIKSKY---YLLKSAEFIYEDSIILL 293
+ + +L+Y +KS + NN + +Y K L K K Y K+ E Y D +L
Sbjct: 118 DLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKDKKDLEYYSKACELNYGDGCAIL 177
Query: 294 GDYYYNGFKTIDNHDDHDDGSGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGIC 353
GD Y+NG +G + +D KAF + LN + +KLG
Sbjct: 178 GDIYHNG-----------EG---------VAKDLKKAFQYYSKACELN-NGEGYSKLGGA 216
Query: 354 FYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYF 413
+++G GVT D +A+ Y S C + N +T +G G+GV K+ K FEY
Sbjct: 217 YFFGEGVTQDLKKAFG--YYSKAC----KLNEALTCTLVGEFYRDGEGVAKDLKKAFEYS 270
Query: 414 MKSASLNHYSPALEAVGRCFLNGEGISQNFMQ 445
K+ LN + A+ F +G+++ Q
Sbjct: 271 AKACELND-AKGCYALAAFFNEAKGVARGEKQ 301
Score = 47.0 bits (110), Expect = 0.001
Identities = 54/220 (24%), Positives = 97/220 (43%), Gaps = 33/220 (15%)
Query: 237 NFEKSLKYLT--KSAEQNNAKAYFELFNYYKQQKKDLIKSKYYLLKSAEFIYEDSIILLG 294
+ EK+L++ K+ + N+A+ +L +Y DL + Y KS + + +L
Sbjct: 84 SIEKALEHTATAKACKSNDAEKCRDLAEFYFNVN-DLKNALEYYSKSCKLNNVEGCMLSA 142
Query: 295 DYYYNGFKTIDNHDDHDDGSGENEELNLICQDYFKAFNL-FKIGASLNVDSNSLTKLGIC 353
+Y + K + + ++L Y KA L + G ++ LG
Sbjct: 143 TFYNDMIKGLKK---------DKKDLEY----YSKACELNYGDGCAI---------LGDI 180
Query: 354 FYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYF 413
++ G GV D +A++ Y S C E N + LG F+G+GV ++ K F Y+
Sbjct: 181 YHNGEGVAKDLKKAFQ--YYSKAC----ELNNGEGYSKLGGAYFFGEGVTQDLKKAFGYY 234
Query: 414 MKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTA 453
K+ LN + VG + +GEG++++ +A Y A
Sbjct: 235 SKACKLNE-ALTCTLVGEFYRDGEGVAKDLKKAFEYSAKA 273
>gi|33348985|gb|AAP51657.1| Hsp12 variant C [Helicobacter pylori]
Length = 325
Score = 69.3 bits (168), Expect = 3e-10
Identities = 59/212 (27%), Positives = 94/212 (43%), Gaps = 31/212 (14%)
Query: 237 NFEKSLKYLTKSAEQNNAKAYFELFNYYKQQKKDLIKSKY---YLLKSAEFIYEDSIILL 293
+ + +L+Y +KS + NN + +Y K L K K Y K+ E Y D +L
Sbjct: 117 DLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKDKKDLEYYSKACELNYGDGCAIL 176
Query: 294 GDYYYNGFKTIDNHDDHDDGSGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGIC 353
GD Y+NG +G + Q++ KAF + LN + +KLG
Sbjct: 177 GDIYHNG-----------EG---------VTQNFKKAFKYYSKACELN-NGEGCSKLGGD 215
Query: 354 FYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYF 413
++ G VT D +A+ Y S C E N +T +G G+GV K+ K FEY
Sbjct: 216 YFLGESVTQDLKKAFG--YYSKAC----ELNEALTCTLVGELYRDGEGVAKDLKKAFEYS 269
Query: 414 MKSASLNHYSPALEAVGRCFLNGEGISQNFMQ 445
K+ LN + A+ + G+G++++ Q
Sbjct: 270 AKACELND-AKGCYALAAFYNEGKGVTKDEKQ 300
Score = 40.0 bits (92), Expect = 0.18
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 403 LKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTA 453
LK K EY+ K+ LN Y +G + NGEG++QNF +A Y++ A
Sbjct: 151 LKKDKKDLEYYSKACELN-YGDGCAILGDIYHNGEGVTQNFKKAFKYYSKA 200
>gi|33348987|gb|AAP51658.1| Hsp12 variant C [Helicobacter pylori]
Length = 325
Score = 68.9 bits (167), Expect = 4e-10
Identities = 59/212 (27%), Positives = 94/212 (43%), Gaps = 31/212 (14%)
Query: 237 NFEKSLKYLTKSAEQNNAKAYFELFNYYKQQKKDLIKSKY---YLLKSAEFIYEDSIILL 293
+ + +L+Y +KS + NN + +Y K L K K Y K+ E Y D +L
Sbjct: 117 DLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKDKKDLEYYSKACELNYGDGCAIL 176
Query: 294 GDYYYNGFKTIDNHDDHDDGSGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGIC 353
GD Y+NG +G + Q++ KAF + LN + +KLG
Sbjct: 177 GDIYHNG-----------EG---------VTQNFKKAFKYYSKACELN-NGEGCSKLGGD 215
Query: 354 FYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYF 413
++ G VT D +A+ Y S C E N +T +G G+GV K+ K FEY
Sbjct: 216 YFLGESVTQDLKKAFG--YYSKAC----ELNEALTCTLVGEFYRDGEGVTKDLKKAFEYS 269
Query: 414 MKSASLNHYSPALEAVGRCFLNGEGISQNFMQ 445
K+ LN + A+ + G+G++++ Q
Sbjct: 270 AKACELND-AKGCYALAAFYNEGKGVAKDEKQ 300
Score = 40.0 bits (92), Expect = 0.18
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 403 LKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTA 453
LK K EY+ K+ LN Y +G + NGEG++QNF +A Y++ A
Sbjct: 151 LKKDKKDLEYYSKACELN-YGDGCAILGDIYHNGEGVTQNFKKAFKYYSKA 200
>gi|33348983|gb|AAP51656.1| Hsp12 variant C [Helicobacter pylori]
Length = 325
Score = 68.9 bits (167), Expect = 4e-10
Identities = 59/212 (27%), Positives = 94/212 (43%), Gaps = 31/212 (14%)
Query: 237 NFEKSLKYLTKSAEQNNAKAYFELFNYYKQQKKDLIKSKY---YLLKSAEFIYEDSIILL 293
+ + +L+Y +KS + NN + +Y K L K K Y K+ E Y D +L
Sbjct: 117 DLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKDKKDLEYYSKACELNYGDGCAIL 176
Query: 294 GDYYYNGFKTIDNHDDHDDGSGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGIC 353
GD Y+NG +G + Q++ KAF + LN + +KLG
Sbjct: 177 GDIYHNG-----------EG---------VTQNFKKAFKYYSKACELN-NGEGCSKLGGD 215
Query: 354 FYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYF 413
++ G VT D +A+ Y S C E N +T +G G+GV K+ K FEY
Sbjct: 216 YFLGESVTQDLKKAFG--YYSKAC----ELNEALTCTLVGEFYRDGEGVTKDLKKAFEYS 269
Query: 414 MKSASLNHYSPALEAVGRCFLNGEGISQNFMQ 445
K+ LN + A+ + G+G++++ Q
Sbjct: 270 AKACELND-AKGCYALAAFYNEGKGVAKDEKQ 300
Score = 40.0 bits (92), Expect = 0.18
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 403 LKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTA 453
LK K EY+ K+ LN Y +G + NGEG++QNF +A Y++ A
Sbjct: 151 LKKDKKDLEYYSKACELN-YGDGCAILGDIYHNGEGVTQNFKKAFKYYSKA 200
>gi|33348975|gb|AAP51652.1| Hsp12 variant C [Helicobacter pylori]
Length = 325
Score = 68.9 bits (167), Expect = 4e-10
Identities = 59/212 (27%), Positives = 94/212 (43%), Gaps = 31/212 (14%)
Query: 237 NFEKSLKYLTKSAEQNNAKAYFELFNYYKQQKKDLIKSKY---YLLKSAEFIYEDSIILL 293
+ + +L+Y +KS + NN + +Y K L K K Y K+ E Y D +L
Sbjct: 117 DLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKDKKDLEYYSKACELNYGDGCAIL 176
Query: 294 GDYYYNGFKTIDNHDDHDDGSGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGIC 353
GD Y+NG +G + Q++ KAF + LN + +KLG
Sbjct: 177 GDIYHNG-----------EG---------VTQNFKKAFKYYSKACELN-NGEGCSKLGGD 215
Query: 354 FYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYF 413
++ G VT D +A+ Y S C E N +T +G G+GV K+ K FEY
Sbjct: 216 YFLGESVTQDLKKAFG--YYSKAC----ELNEALTCTLVGEFYRDGEGVTKDLKKAFEYS 269
Query: 414 MKSASLNHYSPALEAVGRCFLNGEGISQNFMQ 445
K+ LN + A+ + G+G++++ Q
Sbjct: 270 AKACELND-AKGCYALAAFYNEGKGVAKDEKQ 300
Score = 40.0 bits (92), Expect = 0.18
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 403 LKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTA 453
LK K EY+ K+ LN Y +G + NGEG++QNF +A Y++ A
Sbjct: 151 LKKDKKDLEYYSKACELN-YGDGCAILGDIYHNGEGVTQNFKKAFKYYSKA 200
>gi|33348961|gb|AAP51644.1| Hsp12 variant C [Helicobacter pylori]
Length = 325
Score = 68.9 bits (167), Expect = 4e-10
Identities = 59/212 (27%), Positives = 94/212 (43%), Gaps = 31/212 (14%)
Query: 237 NFEKSLKYLTKSAEQNNAKAYFELFNYYKQQKKDLIKSKY---YLLKSAEFIYEDSIILL 293
+ + +L+Y +KS + NN + +Y K L K K Y K+ E Y D +L
Sbjct: 117 DLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKDKKDLEYYSKACELNYGDGCAIL 176
Query: 294 GDYYYNGFKTIDNHDDHDDGSGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGIC 353
GD Y+NG +G + Q++ KAF + LN + +KLG
Sbjct: 177 GDIYHNG-----------EG---------VTQNFKKAFKYYSKACELN-NGEGCSKLGGD 215
Query: 354 FYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYF 413
++ G VT D +A+ Y S C E N +T +G G+GV K+ K FEY
Sbjct: 216 YFLGESVTQDLKKAFG--YYSKAC----ELNEALTCTLVGEFYRDGEGVTKDLKKAFEYS 269
Query: 414 MKSASLNHYSPALEAVGRCFLNGEGISQNFMQ 445
K+ LN + A+ + G+G++++ Q
Sbjct: 270 AKACELND-AKGCYALAAFYNEGKGVAKDEKQ 300
Score = 40.8 bits (94), Expect = 0.10
Identities = 50/207 (24%), Positives = 86/207 (41%), Gaps = 33/207 (15%)
Query: 249 AEQNNAKAYFELFNYYKQQKKDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHD 308
AEQ++ + F Y KD ++K Y K+ + D +L + Y + +N
Sbjct: 25 AEQDSKELIFSGITIYTD--KDFTRAKEYFEKACKLNDADGCAILREAYSKAIAS-ENAR 81
Query: 309 DHDDGSGENEELNLICQ--DYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNE 366
+ + + E+ C+ D K +L + + N N+L YY + ++ E
Sbjct: 82 ESIEKAIEHTATAKACKSNDAEKCKDLAEFYFNANDLKNALE------YYSKSCKLNNVE 135
Query: 367 AYRLFYQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPAL 426
L TFY + KG+ K++ K EY+ K+ LN Y
Sbjct: 136 GCML---------------SATFYNDMI-----KGLKKDK-KDLEYYSKACELN-YGDGC 173
Query: 427 EAVGRCFLNGEGISQNFMQAKLYFTTA 453
+G + NGEG++QNF +A Y++ A
Sbjct: 174 AILGDIYHNGEGVTQNFKKAFKYYSKA 200
>gi|33348977|gb|AAP51653.1| Hsp12 variant C [Helicobacter pylori]
Length = 325
Score = 67.8 bits (164), Expect = 8e-10
Identities = 58/212 (27%), Positives = 94/212 (43%), Gaps = 31/212 (14%)
Query: 237 NFEKSLKYLTKSAEQNNAKAYFELFNYYKQQKKDLIKSKY---YLLKSAEFIYEDSIILL 293
+ + +L+Y ++S + NN + +Y K L K K Y K+ E Y D +L
Sbjct: 117 DLKNALEYYSRSCKLNNVEGCMLSATFYNDMIKGLKKDKKDLEYYSKACELNYGDGCAIL 176
Query: 294 GDYYYNGFKTIDNHDDHDDGSGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGIC 353
GD Y+NG +G + Q++ KAF + LN + +KLG
Sbjct: 177 GDIYHNG-----------EG---------VTQNFKKAFKYYSKACELN-NGEGCSKLGGD 215
Query: 354 FYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYF 413
++ G VT D +A+ Y S C E N +T +G G+GV K+ K FEY
Sbjct: 216 YFLGESVTQDLKKAFG--YYSKAC----ELNEALTCTLVGEFYRDGEGVTKDLKKAFEYS 269
Query: 414 MKSASLNHYSPALEAVGRCFLNGEGISQNFMQ 445
K+ LN + A+ + G+G++++ Q
Sbjct: 270 AKACELND-AKGCYALAAFYNEGKGVAKDEKQ 300
Score = 40.0 bits (92), Expect = 0.18
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 403 LKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTA 453
LK K EY+ K+ LN Y +G + NGEG++QNF +A Y++ A
Sbjct: 151 LKKDKKDLEYYSKACELN-YGDGCAILGDIYHNGEGVTQNFKKAFKYYSKA 200
>gi|33348966|gb|AAP51647.1| Hsp12 variant C [Helicobacter pylori]
Length = 325
Score = 67.8 bits (164), Expect = 8e-10
Identities = 58/212 (27%), Positives = 93/212 (43%), Gaps = 31/212 (14%)
Query: 237 NFEKSLKYLTKSAEQNNAKAYFELFNYYKQQKKDLIKSKY---YLLKSAEFIYEDSIILL 293
+ + + KY +KS + NN + +Y K L K K Y K+ E Y D +L
Sbjct: 117 DLKNAFKYYSKSCKLNNVEGCMLSATFYNDMIKGLKKDKKDLEYYSKACELNYGDGCAIL 176
Query: 294 GDYYYNGFKTIDNHDDHDDGSGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGIC 353
GD Y+NG +G + Q++ +AF + LN + +KLG
Sbjct: 177 GDIYHNG-----------EG---------VTQNFKRAFKYYSKACELN-NGEGCSKLGGD 215
Query: 354 FYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYF 413
++ G VT D +A+ Y S C E N +T +G G+GV K+ K FEY
Sbjct: 216 YFLGESVTQDLKKAFG--YYSKAC----ELNEALTCTLVGEFYRDGEGVTKDLKKAFEYS 269
Query: 414 MKSASLNHYSPALEAVGRCFLNGEGISQNFMQ 445
K+ LN + A+ + G+G++++ Q
Sbjct: 270 AKACELND-AKGCYALAAFYNEGKGVAKDEKQ 300
Score = 41.2 bits (95), Expect = 0.079
Identities = 49/205 (23%), Positives = 84/205 (40%), Gaps = 29/205 (14%)
Query: 249 AEQNNAKAYFELFNYYKQQKKDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHD 308
AE N + F Y KD ++K Y K+ E D I+L + Y + +N
Sbjct: 25 AESNPKELIFLGITIYTD--KDFTRAKEYFEKACELNDADGCIILREAYSKAIAS-ENAR 81
Query: 309 DHDDGSGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAY 368
+ + + E+ C+ D+ L FY+ D A+
Sbjct: 82 ESIEKALEHTATAKACKSN---------------DAEKCKDLAE-FYFNAN---DLKNAF 122
Query: 369 RLFYQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEA 428
+ + +S ++ + TFY + KG+ K++ K EY+ K+ LN Y
Sbjct: 123 KYYSKSCKLNNVEGCMLSATFYNDMI-----KGLKKDK-KDLEYYSKACELN-YGDGCAI 175
Query: 429 VGRCFLNGEGISQNFMQAKLYFTTA 453
+G + NGEG++QNF +A Y++ A
Sbjct: 176 LGDIYHNGEGVTQNFKRAFKYYSKA 200
>gi|33348968|gb|AAP51648.1| Hsp12 variant C [Helicobacter pylori]
Length = 326
Score = 67.0 bits (162), Expect = 1e-09
Identities = 58/212 (27%), Positives = 94/212 (43%), Gaps = 31/212 (14%)
Query: 237 NFEKSLKYLTKSAEQNNAKAYFELFNYYKQQKKDLIKSKY---YLLKSAEFIYEDSIILL 293
+ + +L+Y +KS + NN + +Y K L K K Y K+ E Y D +L
Sbjct: 118 DLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKDKKDLEYYSKACELNYGDGCAIL 177
Query: 294 GDYYYNGFKTIDNHDDHDDGSGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGIC 353
GD Y+NG +G + Q++ KAF + LN + +KLG
Sbjct: 178 GDIYHNG-----------EG---------VTQNFKKAFKYYSKACELN-NGEGCSKLGGD 216
Query: 354 FYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYF 413
++ G VT D +A+ + S C E N +T +G G+GV K+ K FEY
Sbjct: 217 YFLGESVTQDLKKAFG--HYSKAC----ELNEALTCTLVGEFYRDGEGVTKDLKKAFEYS 270
Query: 414 MKSASLNHYSPALEAVGRCFLNGEGISQNFMQ 445
K+ LN + A+ + G+G++++ Q
Sbjct: 271 AKACELND-AKGCYALAAFYNEGKGVAKDEKQ 301
Score = 40.0 bits (92), Expect = 0.18
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 403 LKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTA 453
LK K EY+ K+ LN Y +G + NGEG++QNF +A Y++ A
Sbjct: 152 LKKDKKDLEYYSKACELN-YGDGCAILGDIYHNGEGVTQNFKKAFKYYSKA 201
>gi|21616255|gb|AAM66149.1| JHP1437-like protein [Helicobacter
pylori]
Length = 310
Score = 66.6 bits (161), Expect = 2e-09
Identities = 55/187 (29%), Positives = 82/187 (43%), Gaps = 30/187 (16%)
Query: 237 NFEKSLKYLTKSAEQNNAKAYFELFNYYKQQKKDLIKSKY---YLLKSAEFIYEDSIILL 293
+ + +L+Y +KS + NN + +Y K L K K Y K+ E Y D +L
Sbjct: 117 DLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKDKKDLEYYSKACELNYGDGCAIL 176
Query: 294 GDYYYNGFKTIDNHDDHDDGSGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGIC 353
GD Y+NG +G + Q++ KAF + LN + +KLG
Sbjct: 177 GDIYHNG-----------EG---------VTQNFKKAFKYYSKACELN-NGEGCSKLGGD 215
Query: 354 FYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYF 413
++ G VT D +A+ Y S C E N +T +G G+GV K+ K FEY
Sbjct: 216 YFLGESVTQDLKKAFG--YYSKAC----ELNEALTCTLVGEFYRDGEGVTKDLKKAFEYS 269
Query: 414 MKSASLN 420
K+ LN
Sbjct: 270 AKACELN 276
Score = 40.0 bits (92), Expect = 0.18
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 403 LKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTA 453
LK K EY+ K+ LN Y +G + NGEG++QNF +A Y++ A
Sbjct: 151 LKKDKKDLEYYSKACELN-YGDGCAILGDIYHNGEGVTQNFKKAFKYYSKA 200
>gi|52842845|ref|YP_096644.1| enhanced entry protein EnhC [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
gb|AAU28697.1| enhanced entry protein EnhC [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
Length = 1200
Score = 65.1 bits (157), Expect = 5e-09
Identities = 65/259 (25%), Positives = 115/259 (44%), Gaps = 36/259 (13%)
Query: 205 KEFLKKQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAYFELFNYY 264
KE K ++KG+ AQ L + + + T SAEQ N +A + L +Y
Sbjct: 815 KEIYKGLADKGDQYAQLKLAYMLQKGLGAAP-DLAGAQHWYTASAEQGNPEAQYLLGQFY 873
Query: 265 K---QQKKDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHDDGSGENEELN 321
+ + D +KY+ K+A+ + + + L G Y +T+D+
Sbjct: 874 QLGETGEPDYNLAKYWYQKAAKHLSKADVAL-GFIY----ETVDD--------------- 913
Query: 322 LICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICDHHQ 381
DY +A ++ A+ D L + + YG+GV + Y++A LF ++S +
Sbjct: 914 ----DYAQALKAYE-NAAAKGDMLGAYNLALMYEYGKGVPVTYSKALSLFKEAS-----E 963
Query: 382 EHNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQ 441
+ PE G+ FYG G +N+ + ++ K+ASL + AL A+G G G+
Sbjct: 964 KGAPEAMSQLAGM-YFYGLGQPRNEQQALVWYKKAASLGN-GNALYALGLLSETGVGVKL 1021
Query: 442 NFMQAKLYFTTAKSQGSNQ 460
+F A Y+ A +G+ +
Sbjct: 1022 DFPDALRYYQDASDKGNEK 1040
>gi|54295478|ref|YP_127893.1| enhanced entry protein EnhC [Legionella
pneumophila str. Lens]
emb|CAH16804.1| enhanced entry protein EnhC [Legionella pneumophila str. Lens]
Length = 1200
Score = 63.9 bits (154), Expect = 1e-08
Identities = 64/259 (24%), Positives = 116/259 (44%), Gaps = 36/259 (13%)
Query: 205 KEFLKKQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAYFELFNYY 264
KE K ++KG+ AQ L + + + T SAEQ N +A + L +Y
Sbjct: 815 KEIYKGLADKGDQYAQLKLAYMLQKGLGAAP-DLAGAQHWYTASAEQGNPEAQYLLGQFY 873
Query: 265 K---QQKKDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHDDGSGENEELN 321
+ + D +KY+ K+A+ + + + L G Y +T+D++
Sbjct: 874 QLGETGEPDYNLAKYWYQKAAKHLSKADVAL-GFIY----ETVDDN-------------- 914
Query: 322 LICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICDHHQ 381
Y +A ++ A+ D L + + YG+GV ++Y++A LF ++S +
Sbjct: 915 -----YAQALKAYE-NAAAKGDMLGAYNLALMYEYGKGVPVNYSKALSLFKEAS-----E 963
Query: 382 EHNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQ 441
+ PE G+ FYG G +N+ + ++ K+ASL + AL A+G G G+
Sbjct: 964 KGAPEAMSQLAGM-YFYGLGQPRNEQQALVWYKKAASLGN-GNALYALGLLSETGVGVKL 1021
Query: 442 NFMQAKLYFTTAKSQGSNQ 460
+F A Y+ A +G+ +
Sbjct: 1022 DFPDALRYYQDASDKGNEK 1040
>gi|30248264|ref|NP_840334.1| hypothetical protein NE0240
[Nitrosomonas europaea ATCC 19718]
emb|CAD84151.1| hypothetical protein [Nitrosomonas europaea ATCC 19718]
Length = 1032
Score = 63.5 bits (153), Expect = 1e-08
Identities = 43/150 (28%), Positives = 72/150 (47%), Gaps = 15/150 (10%)
Query: 310 HDDGSGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYR 369
+ G G + LN AF LF+ L+ +S ++ LG+C+ GV D NEA+
Sbjct: 675 YQKGEGVKQNLNA-------AFKLFQRAVKLD-NSTAMFYLGLCYQRSEGVKEDLNEAFA 726
Query: 370 LFYQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAV 429
L+ Q++ + YLGLC Y GV ++ K + ++ + S A+ +
Sbjct: 727 LYQQAA------DKGNSTATAYLGLCYQYEVGVKQDLDKAISQYQRAVDEGN-SLAMVFL 779
Query: 430 GRCFLNGEGISQNFMQAKLYFTTAKSQGSN 459
GRC+ GEG++QN +A + A +G +
Sbjct: 780 GRCYQYGEGVNQNINKAIALYQKATDKGDS 809
Score = 62.4 bits (150), Expect = 3e-08
Identities = 65/242 (26%), Positives = 103/242 (41%), Gaps = 43/242 (17%)
Query: 247 KSAEQNN--AKAYFEL-FNYYKQQKKDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKT 303
++A++ N A AY L + Y K+DL K+ ++ + +++ LG Y G
Sbjct: 730 QAADKGNSTATAYLGLCYQYEVGVKQDLDKAISQYQRAVDEGNSLAMVFLGRCYQYG--- 786
Query: 304 IDNHDDHDDGSGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTID 363
G N+ +N Y KA + DS ++T L +C+ G+GV D
Sbjct: 787 ----------EGVNQNINKAIALYQKATD--------KGDSTAMTCLALCYQDGKGVDQD 828
Query: 364 YNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYS 423
+N+A L+ Q+ + N YYLG C G GV +N+ E + +A+ + S
Sbjct: 829 WNKAINLYQQA------VKKNDCTAMYYLGACYENGYGVKQNRSSAIELYRMAANQGN-S 881
Query: 424 PALEAVGRCFLNGEGISQNFMQAKLYFTTAKSQG------------SNQDRNIQDVNKII 471
A+ +G + NG G+ QN +A F A G N + QD NK I
Sbjct: 882 NAMVNLGFYYRNGIGVKQNRKEAVKLFQRAAKVGDYRAMCNLGVCYENGEGVDQDWNKAI 941
Query: 472 EL 473
L
Sbjct: 942 SL 943
>gi|32263379|gb|AAP78424.1| conserved hypothetical protein
[Helicobacter hepaticus ATCC 51449]
ref|NP_861358.1| hypothetical protein HH1827 [Helicobacter hepaticus ATCC 51449]
Length = 488
Score = 63.5 bits (153), Expect = 1e-08
Identities = 62/245 (25%), Positives = 105/245 (42%), Gaps = 31/245 (12%)
Query: 237 NFEKSLKYLTKSAEQNNAKAYFELFNYY---KQQKKDLIKSKYYLLKSAEFIYEDSIILL 293
+F K+ K + N + + L +Y K+ K+D K++ + +S L
Sbjct: 247 DFAKARTLYNKGCDLENGRGCYNLGLHYFLGKEIKQDYTKAREFFTQSCNLYDSLGCYEL 306
Query: 294 GDYYYNGFKTI-DNHDDHD--------DGSGENEELNLIC-------QDYFKAFNLFKIG 337
G YY G + D+ ++ D S + EL L+ DY KA +F
Sbjct: 307 GTMYYRGEGVLQDDRIAYEFLSKAYEIDESLDYNELGLLLTWSENIKHDYAKAKAIFSKS 366
Query: 338 ASLNVDSNSL--TKLGICFYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLC 395
S + N + LGI + +GRGV DY +A L+ Q+ N + Y LGL
Sbjct: 367 CS---EGNGIGCVNLGILYAFGRGVMTDYTKAVELYTQAC------NMNNRVGCYNLGLL 417
Query: 396 LFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTAKS 455
GKGV ++ K E + K+ ++ + A +G + G+G+ Q+ +A+ F A
Sbjct: 418 YSEGKGVRQDYIKARELYTKACNMGE-AGACNNLGVFYTYGKGVRQDKAKARELFGKACD 476
Query: 456 QGSNQ 460
G+ +
Sbjct: 477 MGNQK 481
>gi|5305321|gb|AAD41587.1| enhanced entry protein EnhC [Legionella
pneumophila]
Length = 1201
Score = 62.0 bits (149), Expect = 4e-08
Identities = 63/259 (24%), Positives = 116/259 (44%), Gaps = 36/259 (13%)
Query: 205 KEFLKKQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAYFELFNYY 264
KE K ++KG+ AQ L + + + T SAEQ N +A + L +Y
Sbjct: 816 KEIYKGLADKGDQYAQLKLAYMLQKGLGAAP-DLAGAQHWYTASAEQGNPEAQYLLGQFY 874
Query: 265 K---QQKKDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHDDGSGENEELN 321
+ + D +K++ K+A+ + + + L G Y +T+D++
Sbjct: 875 QLGETGEPDYNLAKHWYQKAAKHLSKADVAL-GFIY----ETVDDN-------------- 915
Query: 322 LICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICDHHQ 381
Y +A ++ A+ D L + + YG+GV ++Y++A LF ++S +
Sbjct: 916 -----YAQALKAYE-NAAAKGDMLGAYNLALMYEYGKGVPVNYSKALSLFKEAS-----E 964
Query: 382 EHNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQ 441
+ PE G+ FYG G +N+ + ++ K+ASL + AL A+G G G+
Sbjct: 965 KGAPEAMSQLAGM-YFYGLGQPRNEQQALVWYKKAASLGN-GNALYALGLLSETGVGVKL 1022
Query: 442 NFMQAKLYFTTAKSQGSNQ 460
+F A Y+ A +G+ +
Sbjct: 1023 DFPDALRYYQDASDKGNEK 1041
>gi|15611386|ref|NP_223037.1| hypothetical protein jhp0318
[Helicobacter pylori J99]
gb|AAD05894.1| putative [Helicobacter pylori J99]
pir||F71945 hypothetical protein jhp0318 - Helicobacter pylori (strain J99)
Length = 251
Score = 62.0 bits (149), Expect = 4e-08
Identities = 53/185 (28%), Positives = 80/185 (42%), Gaps = 28/185 (15%)
Query: 269 KDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHDDGSGENEELNLICQDYF 328
KD I++K Y K+ Y LGD Y DDG G + L Q Y
Sbjct: 9 KDFIQAKKYFEKACNLNYGGGCGALGDLY-------------DDGKGVEKNLIKAAQPYT 55
Query: 329 KAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEIT 388
KA L + +L +YYGRGV + +A + Y S CD N +
Sbjct: 56 KACEL--------KEGLGCERLWSLYYYGRGVEKNLIKAAQ--YASKACDL----NNGVG 101
Query: 389 FYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKL 448
LG YG+GV K+ K +Y K+ LN+ S + +G + +G+G+ +N +A
Sbjct: 102 CKNLGFLYEYGEGVEKDLIKAAQYASKACDLNNGS-GCDVLGFLYGSGKGVEKNLTKAAY 160
Query: 449 YFTTA 453
+++ A
Sbjct: 161 FYSKA 165
Score = 39.7 bits (91), Expect = 0.23
Identities = 49/188 (26%), Positives = 75/188 (39%), Gaps = 35/188 (18%)
Query: 237 NFEKSLKYLTKSAEQNNA---KAYFELFNYYKQQKKDLIKSKYYLLKSAEFIYEDSIILL 293
N K+ +Y +K+ + NN K L+ Y + +KDLIK+ Y K+ + +L
Sbjct: 82 NLIKAAQYASKACDLNNGVGCKNLGFLYEYGEGVEKDLIKAAQYASKACDLNNGSGCDVL 141
Query: 294 GDYYYNGFKTIDNHDDHDDGSGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGIC 353
G Y GSG+ E NL YF + LN G+
Sbjct: 142 GFLY---------------GSGKGVEKNLTKAAYF-----YSKACDLNEGLGCFNLGGL- 180
Query: 354 FYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFY--GKGVLKNQCKGFE 411
Y G+GV D + L+ S C+ + +F L + Y G+GV K+ K +
Sbjct: 181 -YNGQGVEKDLTKVAYLY--SKACELKE------SFGCGALAVLYINGQGVEKDLTKADQ 231
Query: 412 YFMKSASL 419
Y K+ L
Sbjct: 232 YISKACKL 239
>gi|46446345|ref|YP_007710.1| hypothetical protein pc0711
[Parachlamydia sp. UWE25]
emb|CAF23435.1| conserved hypothetical protein [Parachlamydia sp. UWE25]
Length = 412
Score = 60.5 bits (145), Expect = 1e-07
Identities = 57/219 (26%), Positives = 96/219 (43%), Gaps = 25/219 (11%)
Query: 239 EKSLKYLTKSAEQNNAKAYFELFNYYKQQKKDLIKSKYYLLKSAEFIYEDSIILLGDYYY 298
+++ KY +A+Q + A + L Y + + +SK K +F D Y
Sbjct: 131 QETFKYFKLAADQGHVMAEYSLGAMY-DEGCGVTQSKQEAFKYFKFA-ADQGDATAQYKL 188
Query: 299 NGFKTIDNHDDHDDGSGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGR 358
+D+GSG + + +AF FK+ A + + KLGI + YGR
Sbjct: 189 GAM--------YDEGSG-------VTRSEQEAFKYFKLAADQG-HATAQYKLGIIYGYGR 232
Query: 359 GVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSAS 418
VT EA++ + ++ H Y LGL YG GV +++ + F+YF +A
Sbjct: 233 CVTNSEQEAFKYYKLAADQGHVMAQ------YSLGLTYAYGWGVKQSKQEAFKYFKLAAD 286
Query: 419 LNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTAKSQG 457
H + A +G + NG G+ ++ +A Y+ A QG
Sbjct: 287 QGH-AKAQYQLGDTYKNGRGVKRSKQEAIKYYKLAADQG 324
Score = 43.1 bits (100), Expect = 0.021
Identities = 62/277 (22%), Positives = 114/277 (40%), Gaps = 36/277 (12%)
Query: 199 QYNKENKEFLKKQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAYF 258
Q +E ++ K +++G++ AQ L +++ KY +A+Q +A A +
Sbjct: 164 QSKQEAFKYFKFAADQGDATAQYKLGAMYDEGSGVTRSE-QEAFKYFKLAADQGHATAQY 222
Query: 259 ELFNYYKQQK----KDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHDDGS 314
+L Y + + KYY L +A+ + + LG Y G+
Sbjct: 223 KLGIIYGYGRCVTNSEQEAFKYYKL-AADQGHVMAQYSLGLTYAYGWG------------ 269
Query: 315 GENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQS 374
+ Q +AF FK+ A + + +LG + GRGV EA + +Y+
Sbjct: 270 --------VKQSKQEAFKYFKLAADQG-HAKAQYQLGDTYKNGRGVKRSKQEAIK-YYKL 319
Query: 375 SICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFL 434
+ + + YYLG+ + ++++ + F+YF +A H + A VG +
Sbjct: 320 AADQGYADAQ-----YYLGIIYDKKRDAIQSKQEAFKYFKLAADQGH-ADAQYFVGMMYQ 373
Query: 435 NGEGISQNFMQAKLYFTTAKSQGSNQDRNIQDVNKII 471
G G+S + A Y+ A QG + +N II
Sbjct: 374 KGRGVSPSEEGAIKYYKLAAKQGDTMAAS--KINSII 408
Score = 41.2 bits (95), Expect = 0.079
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 7/115 (6%)
Query: 343 DSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFYGKGV 402
D+ + KLG+ + G GVT E ++ F ++ H + Y LG G GV
Sbjct: 109 DTKAQYKLGLMYDEGCGVTQSKQETFKYFKLAADQGH------VMAEYSLGAMYDEGCGV 162
Query: 403 LKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTAKSQG 457
+++ + F+YF K A+ + A +G + G G++++ +A YF A QG
Sbjct: 163 TQSKQEAFKYF-KFAADQGDATAQYKLGAMYDEGSGVTRSEQEAFKYFKLAADQG 216
>gi|54298628|ref|YP_124997.1| enhanced entry protein EnhC [Legionella
pneumophila str. Paris]
emb|CAH13845.1| enhanced entry protein EnhC [Legionella pneumophila str. Paris]
Length = 1200
Score = 60.5 bits (145), Expect = 1e-07
Identities = 62/259 (23%), Positives = 116/259 (43%), Gaps = 36/259 (13%)
Query: 205 KEFLKKQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAYFELFNYY 264
KE + ++KG+ AQ L + + + T SAEQ N +A + L +Y
Sbjct: 815 KEIYQGLADKGDQYAQLKLAYMLQKGLGAAP-DLAGAQHWYTASAEQGNPEAQYLLGQFY 873
Query: 265 K---QQKKDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHDDGSGENEELN 321
+ + D +K++ K+A+ + + + L G Y +T+D++
Sbjct: 874 QLGETGEPDYNLAKHWYQKAAKHLSKADVAL-GFIY----ETVDDN-------------- 914
Query: 322 LICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICDHHQ 381
Y +A ++ A+ D L + + YG+GV ++Y++A LF ++S +
Sbjct: 915 -----YAQALKAYE-NAAAKGDMLGAYNLALMYEYGKGVPVNYSKALSLFKEAS-----E 963
Query: 382 EHNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQ 441
+ PE G+ FYG G +N+ + ++ K+ASL + AL A+G G G+
Sbjct: 964 KGAPEAMSQLAGM-YFYGLGQPRNEQQALVWYKKAASLGN-GNALYALGLLSETGVGVKL 1021
Query: 442 NFMQAKLYFTTAKSQGSNQ 460
+F A Y+ A +G+ +
Sbjct: 1022 DFPDALRYYQDASDKGNEK 1040
>gi|19069568|emb|CAD25953.1| similarity to SKT5 PROTEIN
[Encephalitozoon cuniculi GB-M1]
ref|NP_586349.1| similarity to SKT5 PROTEIN [Encephalitozoon cuniculi]
Length = 590
Score = 57.0 bits (136), Expect = 1e-06
Identities = 58/196 (29%), Positives = 87/196 (43%), Gaps = 35/196 (17%)
Query: 271 LIKSKYYLLKSAEFIYED---SIILLGDYYYNGFKTIDNHDDHDDGSGENEELNLICQDY 327
L+ KYY +E YE SI +LG + GF G NEE+
Sbjct: 154 LLAVKYY----SEGAYEGNTCSIGILGYCFLKGF-----------GVERNEEI------- 191
Query: 328 FKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEI 387
A LFK AS DS +L +G C+ GRGV + +A+ ++ S+ ++ N
Sbjct: 192 --AVELFKY-ASEKKDSTALYNIGFCYEEGRGVERNLIKAFEMYRLSAKMENSYAQNA-- 246
Query: 388 TFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAK 447
LG C GKGV ++ K FE + KSA L Y + C+ G G +N +A
Sbjct: 247 ----LGNCYEEGKGVDRDLQKAFELYKKSA-LQGYPSGQCNLAFCYQKGIGTERNLEKAF 301
Query: 448 LYFTTAKSQGSNQDRN 463
++ A QG ++ ++
Sbjct: 302 EWYKRAAIQGLSRAKH 317
Score = 44.7 bits (104), Expect = 0.007
Identities = 52/199 (26%), Positives = 82/199 (41%), Gaps = 30/199 (15%)
Query: 273 KSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHDDGSGENEELNLICQDYFKAFN 332
KS + ++AE + LG YY G+ T N KA
Sbjct: 407 KSFALMKRAAEMNNSSAQNTLGYYYEEGYGTPKN--------------------LRKAVK 446
Query: 333 LFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYL 392
++ A N +S +L L + G V D RL +S + + N L
Sbjct: 447 WYETSAKRN-NSWALFNLSTLYLNGNHVPADKELGIRLLIRSRDLGNPRAMNT------L 499
Query: 393 GLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTT 452
G C G V K+ FE++ + A +N YS A ++GRC+ +G G + +A YF
Sbjct: 500 GYCFEKGIVVGKDPRLAFEHYTQ-ALMNGYSKAGYSLGRCYESGIGTEVDLDKALYYFYK 558
Query: 453 AKSQGSNQDRNIQDVNKII 471
A S G ++ ++Q + KI+
Sbjct: 559 ASSAG--EEASLQRLKKIL 575
Score = 42.4 bits (98), Expect = 0.035
Identities = 62/242 (25%), Positives = 94/242 (38%), Gaps = 28/242 (11%)
Query: 237 NFEKSLKYLTKSAEQNNAKAYFELFNYYKQQK---KDLIKSKYYLLKSAEFIYEDSIILL 293
N K+ + SA+ N+ A L N Y++ K +DL K+ KSA Y L
Sbjct: 224 NLIKAFEMYRLSAKMENSYAQNALGNCYEEGKGVDRDLQKAFELYKKSALQGYPSGQCNL 283
Query: 294 GDYYYNGFKTIDNHDDHDDG---------SGENEELNLICQDYF-------KAFNLFKIG 337
Y G T N + + S + Q+ A N +K
Sbjct: 284 AFCYQKGIGTERNLEKAFEWYKRAAIQGLSRAKHNIGYCYQNGLGTSPCMRSAVNWYKES 343
Query: 338 ASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLF 397
A+ + + S+ LG+C+ +G GV D A R F + + L LC
Sbjct: 344 AAED-NKYSIHALGVCYQHGYGVPKDERLAVRYFSEGVRAGFDE------AIISLALCYR 396
Query: 398 YGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQA-KLYFTTAKSQ 456
G GV + K F ++A +N+ S A +G + G G +N +A K Y T+AK
Sbjct: 397 SGIGVRISPEKSFALMKRAAEMNN-SSAQNTLGYYYEEGYGTPKNLRKAVKWYETSAKRN 455
Query: 457 GS 458
S
Sbjct: 456 NS 457
Score = 41.6 bits (96), Expect = 0.060
Identities = 42/177 (23%), Positives = 74/177 (41%), Gaps = 39/177 (22%)
Query: 315 GENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQS 374
G E NLI KAF ++++ A + +S + LG C+ G+GV D +A+ L+ +S
Sbjct: 218 GRGVERNLI-----KAFEMYRLSAKME-NSYAQNALGNCYEEGKGVDRDLQKAFELYKKS 271
Query: 375 SICDHHQ---------------EHNPEITFYY---------------LGLCLFYGKGVLK 404
++ + E N E F + +G C G G
Sbjct: 272 ALQGYPSGQCNLAFCYQKGIGTERNLEKAFEWYKRAAIQGLSRAKHNIGYCYQNGLGTSP 331
Query: 405 NQCKGFEYFMKSASL-NHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTAKSQGSNQ 460
++ +SA+ N YS + A+G C+ +G G+ ++ A YF+ G ++
Sbjct: 332 CMRSAVNWYKESAAEDNKYS--IHALGVCYQHGYGVPKDERLAVRYFSEGVRAGFDE 386
>gi|23509684|ref|NP_702351.1| SEL-1 protein, putative [Plasmodium
falciparum 3D7]
gb|AAN37075.1| SEL-1 protein, putative [Plasmodium falciparum 3D7]
Length = 851
Score = 55.8 bits (133), Expect = 3e-06
Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 7/134 (5%)
Query: 325 QDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICDHHQEHN 384
+DY KA N + I AS +S +++ LG + G GV I+Y++A F + + + HN
Sbjct: 370 KDYKKAHN-YLIKASKYNNSEAISLLGYIYLLGLGVPINYDKAMEYFIKGNKLNDSLSHN 428
Query: 385 PEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFM 444
LG F+G G + Y+ + AS N+ S A + +L+G G+ Q+F
Sbjct: 429 G------LGYMHFFGLGSFRKNTNLAFYYFELASKNNLSSAQFNLACMYLSGVGVLQSFQ 482
Query: 445 QAKLYFTTAKSQGS 458
A +F + + G+
Sbjct: 483 HAFFWFYKSLNNGN 496
Score = 38.1 bits (87), Expect = 0.67
Identities = 54/205 (26%), Positives = 81/205 (39%), Gaps = 32/205 (15%)
Query: 268 KKDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHDDGSGENEELNLICQDY 327
+KD K+ YL+K++++ ++I LLG Y G N+D
Sbjct: 369 EKDYKKAHNYLIKASKYNNSEAISLLGYIYLLGLGVPINYD------------------- 409
Query: 328 FKAFNLFKIGASLNVDSNSLTKLGICFYYGRG-VTIDYNEAYRLFYQSSICDHHQEHNPE 386
KA F G LN DS S LG ++G G + N A+ F +S ++N
Sbjct: 410 -KAMEYFIKGNKLN-DSLSHNGLGYMHFFGLGSFRKNTNLAFYYFELAS------KNNLS 461
Query: 387 ITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQA 446
+ L G GVL++ F +F KS + N A +G NG S+N
Sbjct: 462 SAQFNLACMYLSGVGVLQSFQHAFFWFYKSLN-NGNLLAAYVIGFMHYNGIIASRN---C 517
Query: 447 KLYFTTAKSQGSNQDRNIQDVNKII 471
KL + + + NKII
Sbjct: 518 KLAVSLLSKVAESNSFVLNTTNKII 542
>gi|46446348|ref|YP_007713.1| hypothetical protein pc0714
[Parachlamydia sp. UWE25]
emb|CAF23438.1| conserved hypothetical protein [Parachlamydia sp. UWE25]
Length = 445
Score = 55.8 bits (133), Expect = 3e-06
Identities = 68/295 (23%), Positives = 123/295 (41%), Gaps = 62/295 (21%)
Query: 199 QYNKENKEFLKKQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAYF 258
Q + E ++ K +++G++ AQ L + ++++KY +AEQ +A A +
Sbjct: 128 QSDAEAIKYFKLAAKQGHADAQYNLGVRYANGRGVTQSD-QEAIKYYKLAAEQGHADAQY 186
Query: 259 ELFNYYK------QQKKDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHDD 312
L Y Q +++ IK YY L +AE + D+ LG Y NG
Sbjct: 187 ALGFMYANRWGIAQSEQEAIK--YYKL-AAEQGHADAQYALGFIYANGLG---------- 233
Query: 313 GSGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFY 372
+ Q +AF FK+ A +N+ LG+ + GRGVT EA++ +
Sbjct: 234 ----------VTQSDAEAFKYFKLAAEQG-HANAQYNLGVRYSNGRGVTQSDQEAFKYYK 282
Query: 373 QSSICDHHQ-EHNPEITF-----------------------------YYLGLCLFYGKGV 402
++ H ++N + + Y LG+ G+GV
Sbjct: 283 LAADQGHADAQYNLGVRYVNGQGVMRSEQEAAKYYKLAADQGYVDAQYNLGVRYSNGRGV 342
Query: 403 LKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTAKSQG 457
+++ + +Y+ +A H + A +G + NG G++Q+ +A Y+ A QG
Sbjct: 343 MQSDQEAIKYYKLAADQGH-AKAQYNLGVRYSNGRGVTQSEQEATKYYKLAADQG 396
Score = 51.6 bits (122), Expect = 6e-05
Identities = 65/264 (24%), Positives = 112/264 (41%), Gaps = 36/264 (13%)
Query: 199 QYNKENKEFLKKQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAYF 258
Q +E ++ K +E+G++ AQ L + E + KY +AEQ +A A +
Sbjct: 200 QSEQEAIKYYKLAAEQGHADAQYALGFIYANGLGVTQSDAE-AFKYFKLAAEQGHANAQY 258
Query: 259 ELFNYYKQQK----KDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHDDGS 314
L Y + D KYY L +A+ + D+ LG Y NG G
Sbjct: 259 NLGVRYSNGRGVTQSDQEAFKYYKL-AADQGHADAQYNLGVRYVNG-----------QGV 306
Query: 315 GENEELNLICQDYFKAFNLFKIGASLN-VDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQ 373
+E+ +A +K+ A VD+ LG+ + GRGV EA + +
Sbjct: 307 MRSEQ---------EAAKYYKLAADQGYVDAQY--NLGVRYSNGRGVMQSDQEAIKYYKL 355
Query: 374 SSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCF 433
++ H + Y LG+ G+GV +++ + +Y+ +A + A +G +
Sbjct: 356 AADQGHAKAQ------YNLGVRYSNGRGVTQSEQEATKYYKLAADQGD-AKAQYNLGARY 408
Query: 434 LNGEGISQNFMQAKLYFTTAKSQG 457
NG G++Q+ +A Y+ A QG
Sbjct: 409 ANGRGVTQSEQEAAKYYKLAADQG 432
Score = 45.1 bits (105), Expect = 0.005
Identities = 36/135 (26%), Positives = 64/135 (46%), Gaps = 8/135 (5%)
Query: 323 ICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICDHHQE 382
+ Q +A FK+ A +++ LG+ + GRGVT EA + +Y+ + H +
Sbjct: 126 VTQSDAEAIKYFKLAAKQG-HADAQYNLGVRYANGRGVTQSDQEAIK-YYKLAAEQGHAD 183
Query: 383 HNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQN 442
Y LG G+ +++ + +Y+ +A H + A A+G + NG G++Q+
Sbjct: 184 AQ-----YALGFMYANRWGIAQSEQEAIKYYKLAAEQGH-ADAQYALGFIYANGLGVTQS 237
Query: 443 FMQAKLYFTTAKSQG 457
+A YF A QG
Sbjct: 238 DAEAFKYFKLAAEQG 252
>gi|56544439|gb|AAV90593.1| conserved hypothetical protein
[Zymomonas mobilis subsp. mobilis ZM4]
ref|YP_163704.1| hypothetical protein ZMO1969 [Zymomonas mobilis subsp. mobilis ZM4]
Length = 336
Score = 55.8 bits (133), Expect = 3e-06
Identities = 54/224 (24%), Positives = 99/224 (44%), Gaps = 33/224 (14%)
Query: 240 KSLKYLTKSAEQNNAKAYFEL---FNYYKQQKKDLIKSKYYLLKSAEFIYEDSIILLGDY 296
KS+ ++A Q NA+A L F+ D K+ Y+ ++A+ + ++LG+
Sbjct: 130 KSVDLYQQAANQGNAQAQLNLGLMFSRGDAVSLDKTKALYWYQQAADKGNPQAELILGNM 189
Query: 297 YYNGFKTIDNHDDHDDGSGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYY 356
YYNG + D KAF ++ A+ + L LG+ + +
Sbjct: 190 YYNG--------------------ETVPLDKTKAFEWYQKAANQGNAAAEL-NLGLMYAH 228
Query: 357 GRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKS 416
G GV +D N++ + +++ E Y LG + G GV ++ K ++ ++
Sbjct: 229 GDGVPLDKNKSLSWYQKAA------EQGDAQAEYSLGNMYYNGDGVAVDKAKALSWYQQA 282
Query: 417 ASLNH-YSPALEAVGRCFLNGEGISQNFMQAKLYFTTAKSQGSN 459
A NH + A A+G F NGEG++ + A + A + G++
Sbjct: 283 A--NHGLAQAELALGIMFYNGEGVTVDKNNAAYWLKQAANHGND 324
Score = 52.0 bits (123), Expect = 4e-05
Identities = 49/228 (21%), Positives = 105/228 (45%), Gaps = 31/228 (13%)
Query: 236 VNFEKSLKYLTKSAEQNNAKAYFELFNYYKQQKK---DLIKSKYYLLKSAEFIYEDSIIL 292
++ K+L + ++A + A A + L +Y + + D K+ Y+ ++ D+ +
Sbjct: 54 IDKSKALTLIQQAANKGFAPAEYALGTFYYKGEAVAADKSKALYWYQQAVTHGDADAALA 113
Query: 293 LGDYYYNGFKTIDNHDDHDDGSGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGI 352
LG+ YYNG + I D K+ +L++ A+ ++ + LG+
Sbjct: 114 LGNMYYNG--------------------DSIAPDKSKSVDLYQQAANQG-NAQAQLNLGL 152
Query: 353 CFYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEY 412
F G V++D +A + Q++ + NP+ LG + G+ V ++ K FE+
Sbjct: 153 MFSRGDAVSLDKTKALYWYQQAA-----DKGNPQAEL-ILGNMYYNGETVPLDKTKAFEW 206
Query: 413 FMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTAKSQGSNQ 460
+ K+A+ + + L +G + +G+G+ + ++ ++ A QG Q
Sbjct: 207 YQKAANQGNAAAELN-LGLMYAHGDGVPLDKNKSLSWYQKAAEQGDAQ 253
Score = 41.2 bits (95), Expect = 0.079
Identities = 45/162 (27%), Positives = 68/162 (41%), Gaps = 25/162 (15%)
Query: 209 KKQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAYFELFNYYKQQK 268
++ ++KGN A+ +L ++ K+ ++ K+A Q NA A L Y
Sbjct: 172 QQAADKGNPQAELILGNMYYNGETVP-LDKTKAFEWYQKAANQGNAAAELNLGLMYAHGD 230
Query: 269 K---DLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHDDGSGENEELNLICQ 325
D KS + K+AE + LG+ YYNG DG +
Sbjct: 231 GVPLDKNKSLSWYQKAAEQGDAQAEYSLGNMYYNG-----------DG---------VAV 270
Query: 326 DYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEA 367
D KA + ++ A+ + L LGI FY G GVT+D N A
Sbjct: 271 DKAKALSWYQQAANHGLAQAELA-LGIMFYNGEGVTVDKNNA 311
>gi|56542607|gb|AAV88761.1| conserved hypothetical protein
[Zymomonas mobilis subsp. mobilis ZM4]
ref|YP_161872.1| hypothetical protein ZMO0137 [Zymomonas mobilis subsp. mobilis ZM4]
Length = 418
Score = 55.8 bits (133), Expect = 3e-06
Identities = 63/253 (24%), Positives = 108/253 (41%), Gaps = 32/253 (12%)
Query: 208 LKKQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAYFELFNYYKQQ 267
L++++E G++ AQ L ++EK+ + K+A+Q A+A ++L + Y Q
Sbjct: 38 LQEKAETGDADAQYALGGAYYQGKGVQR-DYEKAAFWYQKAADQGKAEAQYDLGSAYYQG 96
Query: 268 K---KDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHDDGSGENEELNLIC 324
K + K+ + K+A + +LG YY G I
Sbjct: 97 KGVPQGYEKAALWWQKAAGQGNTAAQYVLGSAYYQG--------------------KGIP 136
Query: 325 QDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICDHHQEHN 384
+DY KA ++ A D+ + LG +Y G GV DY +A +YQ + H
Sbjct: 137 RDYEKAALWWQKAAGQG-DAAAQYDLGNAYYQGAGVPRDYAKALS-WYQKAADQGHAAAQ 194
Query: 385 PEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFM 444
Y LG + G GV + K ++ K+A Y+ A +G + G G+ Q++
Sbjct: 195 -----YDLGSAYYQGAGVPQGYEKAVFWWQKAADQG-YAAAQFNLGNAYYQGAGVPQDYA 248
Query: 445 QAKLYFTTAKSQG 457
+A ++ A QG
Sbjct: 249 KAVFWYQKAADQG 261
Score = 49.3 bits (116), Expect = 3e-04
Identities = 65/271 (23%), Positives = 116/271 (41%), Gaps = 34/271 (12%)
Query: 209 KKQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAYFELFNYYKQQK 268
+K + +GN+ AQ +L ++EK+ + K+A Q +A A ++L N Y Q
Sbjct: 111 QKAAGQGNTAAQYVLGSAYYQGKGIPR-DYEKAALWWQKAAGQGDAAAQYDLGNAYYQGA 169
Query: 269 ---KDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDH--------DDGSGEN 317
+D K+ + K+A+ + + LG YY G ++ D G
Sbjct: 170 GVPRDYAKALSWYQKAADQGHAAAQYDLGSAYYQGAGVPQGYEKAVFWWQKAADQGYAA- 228
Query: 318 EELNL---------ICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAY 368
+ NL + QDY KA ++ A +++ LG ++ GV DY +A
Sbjct: 229 AQFNLGNAYYQGAGVPQDYAKAVFWYQKAADQGY-ADAQFNLGDAYHDEEGVPQDYAKAV 287
Query: 369 RLFYQSSIC--DHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPAL 426
+YQ + D ++N LG+ G GV +++ K ++ K+A + A
Sbjct: 288 -FWYQKAADQGDAAAQNN-------LGVAYARGAGVPQDRAKAVFWYQKAADQGDAN-AQ 338
Query: 427 EAVGRCFLNGEGISQNFMQAKLYFTTAKSQG 457
A+G + G G+ Q+ +A ++ A QG
Sbjct: 339 YALGNAYYQGAGVPQSHEKAVFWWQKAADQG 369
Score = 47.0 bits (110), Expect = 0.001
Identities = 56/231 (24%), Positives = 100/231 (43%), Gaps = 33/231 (14%)
Query: 209 KKQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAYFELFNYYKQQK 268
+K +++G++ AQ L +EK++ + K+A+Q A A F L N Y Q
Sbjct: 183 QKAADQGHAAAQYDLGSAYYQGAGVPQ-GYEKAVFWWQKAADQGYAAAQFNLGNAYYQGA 241
Query: 269 ---KDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHD----------DHDDGSG 315
+D K+ ++ K+A+ Y D+ LGD Y++ ++ D D +
Sbjct: 242 GVPQDYAKAVFWYQKAADQGYADAQFNLGDAYHDEEGVPQDYAKAVFWYQKAADQGDAAA 301
Query: 316 ENEELNL---------ICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNE 366
+N NL + QD KA ++ A D+N+ LG +Y G GV + +
Sbjct: 302 QN---NLGVAYARGAGVPQDRAKAVFWYQKAADQG-DANAQYALGNAYYQGAGVPQSHEK 357
Query: 367 AYRLFYQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSA 417
A +F+ D Y LG+ G+G+ +++ +G + K+A
Sbjct: 358 A--VFWWQKAADQ----GFVAAEYNLGVAYLKGQGIAQDKGRGQFWLQKAA 402
>gi|56413318|ref|YP_150393.1| putative secreted protein [Salmonella
enterica subsp. enterica serovar Paratypi A str. ATCC
9150]
gb|AAV77081.1| putative secreted protein [Salmonella enterica subsp. enterica
serovar Paratypi A str. ATCC 9150]
Length = 509
Score = 55.1 bits (131), Expect = 5e-06
Identities = 67/308 (21%), Positives = 121/308 (38%), Gaps = 61/308 (19%)
Query: 208 LKKQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAYFEL---FNYY 264
L++++E+G+ AQ L +++ ++K+L K+ +Q + +YF L +NY
Sbjct: 42 LEQKAEQGDESAQFALGSWYAEGRYVKP-DYKLAIKWLEKAGKQGSDFSYFILGYHYNYG 100
Query: 265 KQQKKDLIKSKYYLLKSAEFIYEDSIILLGDYYYNG------------------FKTIDN 306
+ K+ + K+AE + +LGD Y G T D
Sbjct: 101 ENFPLSRQKALEWYRKAAELGDSSTQEILGDAYMYGDGFPQNTQLALEWYRKAASPTNDA 160
Query: 307 HDDHDDGSGENEELNL---------ICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYG 357
GS + + L + QDY + L + A N+ + LG+ ++YG
Sbjct: 161 GVVRGQGSASSAQFKLGVMYAHGQGVPQDYQQTAILMRKAAE-NMYYPAQLYLGVAYFYG 219
Query: 358 RGVTIDYNEAYRLFYQSSICDHHQEHNPEITF---------------------------- 389
GV DY +A + + H P
Sbjct: 220 EGVPQDYRQAVYWLNEGIPGSYTPGHIPLSALYDKAHPADRVHSQTWYRKTAQRVMAKVQ 279
Query: 390 YYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLY 449
Y G+ + G +LK+ E++ ++A+ + A +A+G F+ GEG+SQ++ QA +
Sbjct: 280 YNFGVWYYNGYHLLKDHNLALEWYRRAAA-QGLAEAQDAIGVMFMQGEGVSQDYQQALAW 338
Query: 450 FTTAKSQG 457
+ A QG
Sbjct: 339 YRKAARQG 346
Score = 49.3 bits (116), Expect = 3e-04
Identities = 46/208 (22%), Positives = 93/208 (44%), Gaps = 25/208 (12%)
Query: 263 YYKQQKKDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHD--------DHDDGS 314
Y K D + S+ + K+A+ + G +YYNG+ + +H+ G
Sbjct: 252 YDKAHPADRVHSQTWYRKTAQRVMAKVQYNFGVWYYNGYHLLKDHNLALEWYRRAAAQGL 311
Query: 315 GENEEL--------NLICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNE 366
E ++ + QDY +A ++ A + + + T LGI +GR V +
Sbjct: 312 AEAQDAIGVMFMQGEGVSQDYQQALAWYRKAARQGLPA-AQTHLGIMSAFGRDVAQSDRQ 370
Query: 367 AYRLFYQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPAL 426
A + +++ D + Y LG+ G+GV +N ++++K+A ++PA
Sbjct: 371 AIAWYRKAAKQDFAKAQ------YQLGVAYSTGRGVPENSRNALKWYLKAAE-QGFTPAQ 423
Query: 427 EAVGRCFLNG-EGISQNFMQAKLYFTTA 453
A+G + +G +G+ ++ QA +++ A
Sbjct: 424 SALGEIYAHGRQGVPKDNKQAYIWYYMA 451
>gi|52841586|ref|YP_095385.1| TPR repeat protein [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
gb|AAU27438.1| TPR repeat protein [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
Length = 376
Score = 55.1 bits (131), Expect = 5e-06
Identities = 50/204 (24%), Positives = 95/204 (46%), Gaps = 32/204 (15%)
Query: 259 ELFNYYKQQKKDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHDDGSGENE 318
EL + + D + +L+++A+ E+++ LLG Y G+ N+++
Sbjct: 20 ELVGFAAFENGDYTTAYPHLMQAAKEGNEEAMYLLGRMYQYGYGVTTNYEE--------- 70
Query: 319 ELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYY--GRGVTIDYNEAYRLFYQSSI 376
A N ++ A N N+L +L + F Y G+GV+ D+ EA++ + +++
Sbjct: 71 -----------ARNWYQKAADKN---NALAQLSLGFMYDTGKGVSQDFTEAFKWYMKAA- 115
Query: 377 CDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNG 436
++ NP I +GL G GV + K F +F K+A YS A +G ++ G
Sbjct: 116 ----EQGNP-IAQRNIGLMYATGDGVAASDDKAFNWFKKAAE-QGYSKAQVNLGYQYMMG 169
Query: 437 EGISQNFMQAKLYFTTAKSQGSNQ 460
+G ++ +A ++ A QG +
Sbjct: 170 KGTPKDVKKAFEWYQKAAEQGDEK 193
Score = 45.4 bits (106), Expect = 0.004
Identities = 63/277 (22%), Positives = 109/277 (38%), Gaps = 41/277 (14%)
Query: 208 LKKQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAYFELFNYYKQQ 267
L + +++GN A LL N+E++ + K+A++NNA A L Y
Sbjct: 39 LMQAAKEGNEEAMYLLGRMYQYGYGVTT-NYEEARNWYQKAADKNNALAQLSLGFMYDTG 97
Query: 268 K---KDLIKSKYYLLKSAE-------------FIYEDSIILLGDYYYNGFKTIDNHDDHD 311
K +D ++ + +K+AE + D + D +N FK
Sbjct: 98 KGVSQDFTEAFKWYMKAAEQGNPIAQRNIGLMYATGDGVAASDDKAFNWFKKAAEQ---- 153
Query: 312 DGSGENEELNLICQ---------DYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTI 362
++NL Q D KAF ++ A D LG+ Y G+ I
Sbjct: 154 --GYSKAQVNLGYQYMMGKGTPKDVKKAFEWYQKAAEQG-DEKGEYSLGL-LYTGQEGGI 209
Query: 363 DYNEAYRLFYQSSICDH-HQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNH 421
++ ++ S +H H + +YYL G GV + K Y+ +SA+
Sbjct: 210 GADDKAAFYWFSQAANHGHVNAQTYLAYYYLK-----GYGVDADPVKA-AYWYQSAAEKG 263
Query: 422 YSPALEAVGRCFLNGEGISQNFMQAKLYFTTAKSQGS 458
A +G+ L G G+ +++ QA +F + QG+
Sbjct: 264 QPEAQAQLGQLLLTGTGVDKDYQQAAYWFGKSAHQGN 300
>gi|29348810|ref|NP_812313.1| hypothetical protein BT3401
[Bacteroides thetaiotaomicron VPI-5482]
gb|AAO78507.1| conserved hypothetical protein [Bacteroides thetaiotaomicron
VPI-5482]
Length = 381
Score = 55.1 bits (131), Expect = 5e-06
Identities = 44/153 (28%), Positives = 76/153 (48%), Gaps = 11/153 (7%)
Query: 314 SGENEELNLICQDYFK---AFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRL 370
SG+ +L +I D K A F AS+ ++ + LG+ +++G+GV IDY+ A R
Sbjct: 229 SGQINDLGIIFLDEGKFEDAQECFLKAASMG-EAAAAYNLGMMYHFGKGVEIDYDVA-RE 286
Query: 371 FYQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVG 430
+Y+ ++ + + + LG + G GV K+ K F YF ++A S A V
Sbjct: 287 YYEEAV-----KSDYPLALNNLGSIYYNGHGVRKDIAKSFPYFCRAAERGVES-AQFTVA 340
Query: 431 RCFLNGEGISQNFMQAKLYFTTAKSQGSNQDRN 463
G+G++ + +AK +F A +QG +N
Sbjct: 341 TMLFYGQGVAVDKAKAKKWFQKAAAQGCKDSQN 373
>gi|16419167|gb|AAL19605.1| putative TPR repeat protein [Salmonella
typhimurium LT2]
ref|NP_459646.1| tetratricopeptide repeat protein [Salmonella typhimurium LT2]
Length = 331
Score = 55.1 bits (131), Expect = 5e-06
Identities = 58/257 (22%), Positives = 105/257 (40%), Gaps = 27/257 (10%)
Query: 208 LKKQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAYFELFNYYKQQ 267
L + ++ GNS AQ +L + S +L ++AEQ + +A + L YK
Sbjct: 18 LTELAQSGNSEAQYILGRLYNDERIDGSEEDKLSFYWLQQAAEQGHCEAQYWLGLRYKDT 77
Query: 268 KKDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHDDGSGENEELNLICQDY 327
D+ + L S + + + + F T+ + + G + DY
Sbjct: 78 PTDMKDNTLALFWSEKAAQQG--------HRHAFNTLGWVQEGETG---------MAPDY 120
Query: 328 FKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLF-YQSSICDHHQEHNPE 386
+A ++ GA S++L + + Y G ++ N+ L+ ++ + H
Sbjct: 121 AQAVAWYRKGAE---QSHNLAQYNLGRMYHSGTGVEQNDTQALYWFKQAALQGHCASQER 177
Query: 387 ITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQA 446
+ + Y GKG KN ++ KSA L S + +G C+ G+GI Q++ QA
Sbjct: 178 LAYMYGN-----GKGCRKNLSLAALWYKKSA-LQESSYSQYQMGYCYYIGKGIKQDYQQA 231
Query: 447 KLYFTTAKSQGSNQDRN 463
+F A QG + N
Sbjct: 232 IYWFRKAADQGDDDAYN 248
Score = 53.5 bits (127), Expect = 2e-05
Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 16/157 (10%)
Query: 310 HDDGSGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYR 369
+ +G G + L+L Y K+ +L S S ++G C+Y G+G+ DY +A
Sbjct: 182 YGNGKGCRKNLSLAALWYKKS--------ALQESSYSQYQMGYCYYIGKGIKQDYQQAIY 233
Query: 370 LFYQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAV 429
F +++ + + + +G G GV +N E+F KSA N+ S +
Sbjct: 234 WFRKAA------DQGDDDAYNSIGWMYKCGHGVEQNYSLALEWFHKSAECNN-SSGWYNL 286
Query: 430 GRCFLNGEGISQNFMQAKLYFTTAKSQGS-NQDRNIQ 465
G + +G G +Q+ QA +F A+ G N D I+
Sbjct: 287 GCMYRDGHGTAQDLQQALYWFKKAQPTGKWNVDEEIR 323
>gi|51245889|ref|YP_065773.1| hypothetical protein DP2037
[Desulfotalea psychrophila LSv54]
emb|CAG36766.1| hypothetical protein [Desulfotalea psychrophila LSv54]
Length = 265
Score = 55.1 bits (131), Expect = 5e-06
Identities = 56/209 (26%), Positives = 92/209 (43%), Gaps = 31/209 (14%)
Query: 245 LTKSAEQNNAKAYFEL-FNYYKQQ--KKDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGF 301
+ + A+Q NA A L YY + KDL ++ + KSA+ Y + +GD YYNG
Sbjct: 29 IMEKAQQGNAIAQSRLGLMYYTGEGVSKDLKEAFIWFEKSAQQGYSTAQYNMGDMYYNGK 88
Query: 302 KTIDNHDDHDDGSGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVT 361
T N + AF F+ A L + + +LG+ +Y G G
Sbjct: 89 GTTKNLKE--------------------AFAWFERSA-LQGAALAQMRLGLMYYTGEGTA 127
Query: 362 IDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNH 421
D EA+ F +S++ ++ + LG+ + GKG KN + + KSA L
Sbjct: 128 KDLKEAFIWFERSAL------QGQALSQFQLGVMHYTGKGTPKNLKQSLVWLEKSA-LQE 180
Query: 422 YSPALEAVGRCFLNGEGISQNFMQAKLYF 450
S A +G + G+G +++ +A +F
Sbjct: 181 NSNAQYNLGYMYYKGQGTAKDLKKAFSWF 209
Score = 42.7 bits (99), Expect = 0.027
Identities = 53/219 (24%), Positives = 93/219 (42%), Gaps = 31/219 (14%)
Query: 202 KENKEFLKKQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAYFEL- 260
KE + +K +++G S AQ + N +++ + +SA Q A A L
Sbjct: 59 KEAFIWFEKSAQQGYSTAQYNMGDMYYNGKGTTK-NLKEAFAWFERSALQGAALAQMRLG 117
Query: 261 FNYYKQQ--KKDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHDDGSGENE 318
YY + KDL ++ + +SA S LG +Y G G+ +N
Sbjct: 118 LMYYTGEGTAKDLKEAFIWFERSALQGQALSQFQLGVMHYTG-----------KGTPKNL 166
Query: 319 ELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICD 378
+ +L+ + ++L +SN+ LG +Y G+G D +A+ F +S++
Sbjct: 167 KQSLVWLEK----------SALQENSNAQYNLGYMYYKGQGTAKDLKKAFSWFEKSALL- 215
Query: 379 HHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSA 417
+ Y LGL + G+G +K+ K F + KSA
Sbjct: 216 -----GDAVAQYRLGLMYYKGQGTVKDLNKTFFWLDKSA 249
>gi|47168491|pdb|1OUV|A Chain A, Helicobacter Cysteine Rich Protein
C (Hcpc)
Length = 273
Score = 55.1 bits (131), Expect = 5e-06
Identities = 56/220 (25%), Positives = 93/220 (41%), Gaps = 31/220 (14%)
Query: 237 NFEKSLKYLTKSAEQNNAKAYFEL-FNYYKQQ--KKDLIKSKYYLLKSAEFIYEDSIILL 293
+F ++ KY K+ + F L YY+ Q +K+L K+ + K+ + Y + LL
Sbjct: 21 DFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLL 80
Query: 294 GDYYYNGFKTIDNHDDHDDGSGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGIC 353
G+ YY+ G G ++ N Q Y KA +L + LG
Sbjct: 81 GNLYYS-------------GQGVSQNTNKALQYYSKACDL--------KYAEGCASLGGI 119
Query: 354 FYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYF 413
++ G+ VT D+ +A F + CD + I LG G+G K+ K +
Sbjct: 120 YHDGKVVTRDFKKAVEYF--TKACDLNDGDGCTI----LGSLYDAGRGTPKDLKKALASY 173
Query: 414 MKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTA 453
K+ L SP G + +GEG ++NF +A ++ A
Sbjct: 174 DKACDLKD-SPGCFNAGNMYHHGEGATKNFKEALARYSKA 212
Score = 45.4 bits (106), Expect = 0.004
Identities = 32/111 (28%), Positives = 54/111 (47%), Gaps = 11/111 (9%)
Query: 343 DSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFYGKGV 402
D L LG Y + D+ +A + F ++ CD + + LG+ + G+GV
Sbjct: 5 DPKELVGLGAKSYKEK----DFTQAKKYFEKA--CDLKENSG----CFNLGVLYYQGQGV 54
Query: 403 LKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTA 453
KN K ++ K+ LN YS +G + +G+G+SQN +A Y++ A
Sbjct: 55 EKNLKKAASFYAKACDLN-YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKA 104
Score = 40.4 bits (93), Expect = 0.13
Identities = 47/180 (26%), Positives = 68/180 (37%), Gaps = 28/180 (15%)
Query: 267 QKKDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHDDGSGENEELNLICQD 326
++KD ++K Y K+ + LG YY G G + L
Sbjct: 18 KEKDFTQAKKYFEKACDLKENSGCFNLGVLYY-------------QGQGVEKNLKKAASF 64
Query: 327 YFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPE 386
Y KA +L SN LG +Y G+GV+ + N+A L Y S CD
Sbjct: 65 YAKACDLNY--------SNGCHLLGNLYYSGQGVSQNTNKA--LQYYSKACDLKYAEG-- 112
Query: 387 ITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQA 446
LG GK V ++ K EYF K+ LN +G + G G ++ +A
Sbjct: 113 --CASLGGIYHDGKVVTRDFKKAVEYFTKACDLND-GDGCTILGSLYDAGRGTPKDLKKA 169
>gi|2314247|gb|AAD08141.1| conserved hypothetical secreted protein
[Helicobacter pylori 26695]
pir||B64657 conserved hypothetical secreted protein HP1098 - Helicobacter
pylori (strain 26695)
sp|O25728|HCPC_HELPY Putative beta-lactamase hcpC precursor (Cysteine-rich protein C)
ref|NP_207889.1| conserved hypothetical secreted protein [Helicobacter pylori 26695]
Length = 290
Score = 55.1 bits (131), Expect = 5e-06
Identities = 56/220 (25%), Positives = 93/220 (41%), Gaps = 31/220 (14%)
Query: 237 NFEKSLKYLTKSAEQNNAKAYFEL-FNYYKQQ--KKDLIKSKYYLLKSAEFIYEDSIILL 293
+F ++ KY K+ + F L YY+ Q +K+L K+ + K+ + Y + LL
Sbjct: 44 DFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLL 103
Query: 294 GDYYYNGFKTIDNHDDHDDGSGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGIC 353
G+ YY+ G G ++ N Q Y KA +L + LG
Sbjct: 104 GNLYYS-------------GQGVSQNTNKALQYYSKACDL--------KYAEGCASLGGI 142
Query: 354 FYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYF 413
++ G+ VT D+ +A F + CD + I LG G+G K+ K +
Sbjct: 143 YHDGKVVTRDFKKAVEYF--TKACDLNDGDGCTI----LGSLYDAGRGTPKDLKKALASY 196
Query: 414 MKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTA 453
K+ L SP G + +GEG ++NF +A ++ A
Sbjct: 197 DKACDLKD-SPGCFNAGNMYHHGEGATKNFKEALARYSKA 235
Score = 45.8 bits (107), Expect = 0.003
Identities = 33/117 (28%), Positives = 55/117 (46%), Gaps = 11/117 (9%)
Query: 337 GASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCL 396
G D L LG Y + D+ +A + F ++ CD + + LG+
Sbjct: 22 GLMAEQDPKELVGLGAKSYKEK----DFTQAKKYFEKA--CDLKENSG----CFNLGVLY 71
Query: 397 FYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTA 453
+ G+GV KN K ++ K+ LN YS +G + +G+G+SQN +A Y++ A
Sbjct: 72 YQGQGVEKNLKKAASFYAKACDLN-YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKA 127
Score = 40.4 bits (93), Expect = 0.13
Identities = 47/180 (26%), Positives = 68/180 (37%), Gaps = 28/180 (15%)
Query: 267 QKKDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHDDGSGENEELNLICQD 326
++KD ++K Y K+ + LG YY G G + L
Sbjct: 41 KEKDFTQAKKYFEKACDLKENSGCFNLGVLYY-------------QGQGVEKNLKKAASF 87
Query: 327 YFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPE 386
Y KA +L SN LG +Y G+GV+ + N+A L Y S CD
Sbjct: 88 YAKACDLNY--------SNGCHLLGNLYYSGQGVSQNTNKA--LQYYSKACDLKYAEG-- 135
Query: 387 ITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQA 446
LG GK V ++ K EYF K+ LN +G + G G ++ +A
Sbjct: 136 --CASLGGIYHDGKVVTRDFKKAVEYFTKACDLND-GDGCTILGSLYDAGRGTPKDLKKA 192
>gi|29654443|ref|NP_820135.1| enhanced entry protein EnhC [Coxiella
burnetii RSA 493]
gb|AAO90649.1| enhanced entry protein EnhC [Coxiella burnetii RSA 493]
Length = 1044
Score = 54.7 bits (130), Expect = 7e-06
Identities = 78/306 (25%), Positives = 116/306 (37%), Gaps = 57/306 (18%)
Query: 201 NKENKEFLKKQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAYFEL 260
++++ E L+K S++ N+IAQ +L + ++ L KSA Q N A + L
Sbjct: 576 SRKSAEILEKLSKQNNAIAQFMLGNYYLKNKRKENI----AISLLEKSANQGNGYAKYNL 631
Query: 261 FNYYKQQKKDLIKSKYY-LLKSAEFIYEDSIILLGDYYY----------NGFKTIDNHDD 309
KQ K + LL A Y+ +L DYY +
Sbjct: 632 AILAKQNKYTKPGENFLSLLIRAANHYDKIKEILADYYLLDTPVPGSEKKAVAIYQELAN 691
Query: 310 HDDGSGE------NEELNLICQDYFKAFNLFKIGASLNVDSNSLTK--LGICFYYGRGVT 361
D + E NE L +DY KA ++ A N + + LG +Y GRGV
Sbjct: 692 KQDPAAELKLGFMNEHGLLFPKDYHKAEEWYQKSAE---QGNPIAQYLLGNMYYLGRGVD 748
Query: 362 IDYNEAYRLFYQSSICDH----------------------------HQEHNPEITFYYLG 393
D N+A +S+ ++ + HNP+ Y LG
Sbjct: 749 RDVNKAIDWLKKSAAQNYVPAKVGLGFIYEMSKHNYPEAKKWYTLASKFHNPQ-ALYNLG 807
Query: 394 LCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQA-KLYFTT 452
L YGKGV + K F + K A+ N A V +L G GI + A K+Y
Sbjct: 808 LMYEYGKGVKSDPQKAFRLY-KDAAQNGLDLAAVQVAGMYLKGTGIGFDPNTALKMYSQA 866
Query: 453 AKSQGS 458
A+ S
Sbjct: 867 AQKNNS 872
Score = 52.8 bits (125), Expect = 3e-05
Identities = 62/261 (23%), Positives = 111/261 (41%), Gaps = 30/261 (11%)
Query: 198 KQYNKENKEFLKKQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAY 257
K Y+K +E+ +K +E+GN IAQ LL + K++ +L KSA QN A
Sbjct: 713 KDYHKA-EEWYQKSAEQGNPIAQYLLGNMYYLGRGVDR-DVNKAIDWLKKSAAQNYVPAK 770
Query: 258 FELFNYYKQQKKDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHDDGSGEN 317
L Y+ K + ++K + +++F ++ LG Y + G G
Sbjct: 771 VGLGFIYEMSKHNYPEAKKWYTLASKFHNPQALYNLGLMY-------------EYGKG-- 815
Query: 318 EELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSIC 377
+ D KAF L+K A +D ++ G+ + G G+ D N A +++ Q++
Sbjct: 816 -----VKSDPQKAFRLYKDAAQNGLDLAAVQVAGM-YLKGTGIGFDPNTALKMYSQAA-- 867
Query: 378 DHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGE 437
+ N Y LGL G + K Y+ K+A L A+ R + G
Sbjct: 868 ----QKNNSFATYQLGLMSESGVAQKIDLNKARLYYEKAAKEGSVEAQL-ALARFYEFGI 922
Query: 438 GISQNFMQAKLYFTTAKSQGS 458
+ + ++ ++ A ++G+
Sbjct: 923 SVPADISKSINFYQAAAAEGN 943
Score = 47.4 bits (111), Expect = 0.001
Identities = 55/211 (26%), Positives = 82/211 (38%), Gaps = 28/211 (13%)
Query: 208 LKKQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAYFELFNYYKQQ 267
LK+ +EK N A L +FEK Y+T++AE A L NYY QQ
Sbjct: 40 LKQLAEKNNGEATFYLATMYMNGFGVRR-DFEKGFDYMTRAAELKYLPAQLYLGNYYFQQ 98
Query: 268 KKDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHDDGSGENEELNLICQDY 327
+KDL K+ + K+A+ + + G Y NG+ N D I + Y
Sbjct: 99 QKDLEKAVPWFKKAADAGDAGAQLFTGISYLNGYGVKKNID--------------IARKY 144
Query: 328 FKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEI 387
F I A+ N +L F R + R + + ++N
Sbjct: 145 F-------IRAAQNEIPMGQYELAKIFLASR------HAGDRRMGRIWLTKAADKYNYPD 191
Query: 388 TFYYLGLCLFYGKGVLKNQCKGFEYFMKSAS 418
Y LG L+ G K+ KG E+ K+A+
Sbjct: 192 AQYLLGTMLYTGNEAEKDPVKGVEWLEKAAA 222
Score = 41.2 bits (95), Expect = 0.079
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 388 TFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAK 447
+ + LG G GV K+ F+ +MK+A N Y A A+G +L G+G+ Q++ +A
Sbjct: 365 SLFRLGQMYENGLGVQKDPETAFQLYMKAAEQN-YLKAQYAIGTYYLQGKGVPQDYEKAI 423
Query: 448 LYFTTAKSQGSNQ 460
+F A +GS Q
Sbjct: 424 SWFIRAALKGSLQ 436
>gi|48834353|ref|ZP_00291368.1| COG0790: FOG: TPR repeat, SEL1
subfamily [Magnetococcus sp. MC-1]
Length = 747
Score = 54.7 bits (130), Expect = 7e-06
Identities = 65/259 (25%), Positives = 113/259 (43%), Gaps = 32/259 (12%)
Query: 202 KENKEFLKKQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAYFEL- 260
KE ++ +K +E+G + AQ L + ++++K+ K+AEQ +A+A L
Sbjct: 387 KEAVKWYRKAAEQGQAEAQNDLGVMYDKGEGVTK-DAKEAVKWYRKAAEQGHARAQNNLG 445
Query: 261 --FNYYKQQKKDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHDDGSGENE 318
+N + KD ++ + K+AE ++ LG Y D G G +
Sbjct: 446 VMYNNGEGVTKDAKEAVKWYRKAAEQGQAEAQHNLGFMY-------------DKGEGVTK 492
Query: 319 ELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICD 378
+ + Y KA + A N LG+ + G GVT D EA + F +S+
Sbjct: 493 DAKEAVKWYRKAAEQGQAKAQHN--------LGVMYNNGEGVTKDAKEAVKWFRKSA--- 541
Query: 379 HHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEG 438
E + LG+ G+GV K+ + ++F KSA + A +G + NGEG
Sbjct: 542 ---EQGEAKAQHNLGVMYNNGEGVTKDAKEAVKWFRKSAEQGE-AEAQNNLGFMYDNGEG 597
Query: 439 ISQNFMQAKLYFTTAKSQG 457
++++ +A + A QG
Sbjct: 598 VTKDAKEAVKWLRKAAEQG 616
Score = 53.9 bits (128), Expect = 1e-05
Identities = 64/265 (24%), Positives = 117/265 (44%), Gaps = 32/265 (12%)
Query: 202 KENKEFLKKQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAYFELF 261
KE ++ +K +E+G++ AQ L + ++++K+ K+AEQ A+A +L
Sbjct: 351 KEAVKWYRKAAEQGHARAQNNLGVMYNNGEGVTK-DAKEAVKWYRKAAEQGQAEAQNDLG 409
Query: 262 NYYKQQK---KDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHDDGSGENE 318
Y + + KD ++ + K+AE + + LG Y NG G +
Sbjct: 410 VMYDKGEGVTKDAKEAVKWYRKAAEQGHARAQNNLGVMYNNG-------------EGVTK 456
Query: 319 ELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICD 378
+ + Y KA + A N LG + G GVT D EA + + +++
Sbjct: 457 DAKEAVKWYRKAAEQGQAEAQHN--------LGFMYDKGEGVTKDAKEAVKWYRKAA--- 505
Query: 379 HHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEG 438
E + LG+ G+GV K+ + ++F KSA + A +G + NGEG
Sbjct: 506 ---EQGQAKAQHNLGVMYNNGEGVTKDAKEAVKWFRKSAEQGE-AKAQHNLGVMYNNGEG 561
Query: 439 ISQNFMQAKLYFTTAKSQGSNQDRN 463
++++ +A +F + QG + +N
Sbjct: 562 VTKDAKEAVKWFRKSAEQGEAEAQN 586
Score = 53.1 bits (126), Expect = 2e-05
Identities = 58/223 (26%), Positives = 99/223 (44%), Gaps = 33/223 (14%)
Query: 245 LTKSAEQNNAKAYFELFNYYKQQK---KDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGF 301
L +A+ N F L Y + + KD ++ + KSAE Y + LG Y
Sbjct: 213 LGDAAKLANPSVQFNLGVMYDKGQGVTKDAKEAVKWFRKSAEQGYAQAQHNLGVMY---- 268
Query: 302 KTIDNHDDHDDGSGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVT 361
D G G + +D +A F+ A + + LG+ + G+GVT
Sbjct: 269 ---------DKGEG-------VTKDAKEAVKWFRKSAEQG-HAQAQHNLGVMYDKGQGVT 311
Query: 362 IDYNEAYRLFYQSSICDHHQ-EHNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLN 420
D EA + F +S+ H Q +HN LG+ G+GV K+ + +++ K+A
Sbjct: 312 KDAKEAVKWFRKSAEQGHAQAQHN-------LGVMYNNGEGVTKDAKEAVKWYRKAAEQG 364
Query: 421 HYSPALEAVGRCFLNGEGISQNFMQAKLYFTTAKSQGSNQDRN 463
H + A +G + NGEG++++ +A ++ A QG + +N
Sbjct: 365 H-ARAQNNLGVMYNNGEGVTKDAKEAVKWYRKAAEQGQAEAQN 406
Score = 40.0 bits (92), Expect = 0.18
Identities = 52/219 (23%), Positives = 94/219 (42%), Gaps = 31/219 (14%)
Query: 202 KENKEFLKKQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAYFELF 261
KE ++ +K +E+G + AQ L + ++++K+ KSAEQ A+A L
Sbjct: 531 KEAVKWFRKSAEQGEAKAQHNLGVMYNNGEGVTK-DAKEAVKWFRKSAEQGEAEAQNNLG 589
Query: 262 NYYKQQK---KDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHDDGSGENE 318
Y + KD ++ +L K+AE + ++ LG Y D G G +
Sbjct: 590 FMYDNGEGVTKDAKEAVKWLRKAAEQGHANAQAFLGQSY-------------DVGYGVTK 636
Query: 319 ELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICD 378
+ + Y K+ + A N LG+ + G+GVT D EA + + +++
Sbjct: 637 DAKEAVKWYRKSAEQGQAEAQNN--------LGVMYDKGQGVTKDAKEAVKWYRKAA--- 685
Query: 379 HHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSA 417
E + LG G+GV K+ + +++ K+A
Sbjct: 686 ---EQGDARAQFNLGDKYDKGEGVTKDAKEAVKWYRKAA 721
>gi|6010740|gb|AAF01236.1| immunoreactive protein [Coxiella
burnetii]
Length = 469
Score = 54.7 bits (130), Expect = 7e-06
Identities = 78/306 (25%), Positives = 116/306 (37%), Gaps = 57/306 (18%)
Query: 201 NKENKEFLKKQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAYFEL 260
++++ E L+K S++ N+IAQ +L + ++ L KSA Q N A + L
Sbjct: 110 SRKSAEILEKLSKQNNAIAQFMLGNYYLKNKRKENI----AISLLEKSANQGNGYAKYNL 165
Query: 261 FNYYKQQKKDLIKSKYY-LLKSAEFIYEDSIILLGDYYY----------NGFKTIDNHDD 309
KQ K + LL A Y+ +L DYY +
Sbjct: 166 AILAKQNKYTKPGENFLSLLIRAANHYDKIKEILADYYLLDTPVPGSEKKAVAIYQELAN 225
Query: 310 HDDGSGE------NEELNLICQDYFKAFNLFKIGASLNVDSNSLTK--LGICFYYGRGVT 361
D + E NE L +DY KA ++ A N + + LG +Y GRGV
Sbjct: 226 KQDPAAELKLGFMNEHGLLFPKDYHKAEEWYQKSAE---QGNPIAQYLLGNMYYLGRGVD 282
Query: 362 IDYNEAYRLFYQSSICDH----------------------------HQEHNPEITFYYLG 393
D N+A +S+ ++ + HNP+ Y LG
Sbjct: 283 RDVNKAIDWLKKSAAQNYVPAKVGLGFIYEMSKHNYPEAKKWYTLASKFHNPQ-ALYNLG 341
Query: 394 LCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQA-KLYFTT 452
L YGKGV + K F + K A+ N A V +L G GI + A K+Y
Sbjct: 342 LMYEYGKGVKSDPQKAFRLY-KDAAQNGLDLAAVQVAGMYLKGTGIGFDPNTALKMYSQA 400
Query: 453 AKSQGS 458
A+ S
Sbjct: 401 AQKNNS 406
Score = 49.7 bits (117), Expect = 2e-04
Identities = 56/220 (25%), Positives = 94/220 (42%), Gaps = 29/220 (13%)
Query: 198 KQYNKENKEFLKKQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAY 257
K Y+K +E+ +K +E+GN IAQ LL + K++ +L KSA QN A
Sbjct: 247 KDYHKA-EEWYQKSAEQGNPIAQYLLGNMYYLGRGVDR-DVNKAIDWLKKSAAQNYVPAK 304
Query: 258 FELFNYYKQQKKDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHDDGSGEN 317
L Y+ K + ++K + +++F ++ LG Y + G G
Sbjct: 305 VGLGFIYEMSKHNYPEAKKWYTLASKFHNPQALYNLGLMY-------------EYGKG-- 349
Query: 318 EELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSIC 377
+ D KAF L+K A +D ++ G+ + G G+ D N A +++ Q++
Sbjct: 350 -----VKSDPQKAFRLYKDAAQNGLDLAAVQVAGM-YLKGTGIGFDPNTALKMYSQAA-- 401
Query: 378 DHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSA 417
+ N Y LGL G + K Y+ K+A
Sbjct: 402 ----QKNNSFATYQLGLMSESGVAQKIDLNKARLYYEKAA 437
Score = 40.8 bits (94), Expect = 0.10
Identities = 48/225 (21%), Positives = 97/225 (42%), Gaps = 34/225 (15%)
Query: 237 NFEKSLKYLTKSAEQNNAKAYFELFNYY---KQQKKDLIKSKYYLLKSAEFIYEDSIILL 293
++ K+ ++ KSAEQ N A + L N Y + +D+ K+ +L KSA Y + + L
Sbjct: 248 DYHKAEEWYQKSAEQGNPIAQYLLGNMYYLGRGVDRDVNKAIDWLKKSAAQNYVPAKVGL 307
Query: 294 GDYYYNGFKTIDNHDDHDDGSGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGIC 353
G Y + +Y +A + + + + + +L LG+
Sbjct: 308 GFIY-----------------------EMSKHNYPEAKKWYTLASKFH-NPQALYNLGLM 343
Query: 354 FYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYF 413
+ YG+GV D +A+RL+ ++ ++ ++ + G G+ + + +
Sbjct: 344 YEYGKGVKSDPQKAFRLYKDAA------QNGLDLAAVQVAGMYLKGTGIGFDPNTALKMY 397
Query: 414 MKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTAKSQGS 458
++A N+ S A +G +G + +A+LY+ A +GS
Sbjct: 398 SQAAQKNN-SFATYQLGLMSESGVAQKIDLNKARLYYEKAAKEGS 441
>gi|56542514|gb|AAV88668.1| conserved hypothetical protein
[Zymomonas mobilis subsp. mobilis ZM4]
ref|YP_161779.1| hypothetical protein ZMO0044 [Zymomonas mobilis subsp. mobilis ZM4]
Length = 585
Score = 54.7 bits (130), Expect = 7e-06
Identities = 54/214 (25%), Positives = 99/214 (46%), Gaps = 32/214 (14%)
Query: 239 EKSLKYLTKSAEQNNAKAYFELFNYYKQ----QKKDLIKSKYYLLKSAEFIYEDSIILLG 294
+K+ + K+A Q + +A +L Y Q QK D ++YY A+ +++ ++G
Sbjct: 355 KKAFYWCEKAANQGSEEAEEQLAEMYHQGEGTQKDDDKAAEYYQKAWAKHHFDNPATVMG 414
Query: 295 DYYYNGFKTIDNHDDHDDGSGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGICF 354
D Y+ G K I ++Y KA ++ A+ N DS + +G +
Sbjct: 415 DLYFEGQK--------------------IDRNYPKALAWYQKAAAQN-DSRAENAIGNIY 453
Query: 355 YYGRGVTIDYNEAYRLFYQSSICD--HHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEY 412
Y G V D+ +A ++Y+ + D H Q ++ E+ LG G+ V ++ + F +
Sbjct: 454 YSGLAVPQDFKQAL-VWYRKATADFYHTQAYDAEMK---LGDMYSKGQVVPQDLKQAFSW 509
Query: 413 FMKSASLNHYSPALEAVGRCFLNGEGISQNFMQA 446
+ +SA +HY PA + + G G+ +N QA
Sbjct: 510 YERSAR-HHYKPAEIKLSTLYEKGIGVEKNKEQA 542
Score = 53.1 bits (126), Expect = 2e-05
Identities = 60/272 (22%), Positives = 106/272 (38%), Gaps = 35/272 (12%)
Query: 199 QYNKENKE---FLKKQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAK 255
QY +NK+ K +EKGN A LL V+ + S + K+A +
Sbjct: 204 QYAADNKKAFSLCKDAAEKGNLKAAALLGKIYYSGDSGK-VDQKASFYWTEKAARLGDPF 262
Query: 256 AYFELFNYYKQQ----KKDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHD 311
A + + +Y Q + D + Y++ KSA + + LG +Y
Sbjct: 263 AEYNMARFYNPQNGSKRVDPDTAFYWMEKSANQGFHPAESALGRFYR------------- 309
Query: 312 DGSGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLF 371
DG G ++L Y +A I ++ L + +Y+G D +A F
Sbjct: 310 DGQGTGKDLQKAVFWYNRAAEGGNIQGQID--------LAMAYYHGDATEKDSKKA---F 358
Query: 372 YQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGR 431
Y C+ E L G+G K+ K EY+ K+ + +H+ +G
Sbjct: 359 YW---CEKAANQGSEEAEEQLAEMYHQGEGTQKDDDKAAEYYQKAWAKHHFDNPATVMGD 415
Query: 432 CFLNGEGISQNFMQAKLYFTTAKSQGSNQDRN 463
+ G+ I +N+ +A ++ A +Q ++ N
Sbjct: 416 LYFEGQKIDRNYPKALAWYQKAAAQNDSRAEN 447
Score = 42.0 bits (97), Expect = 0.046
Identities = 50/265 (18%), Positives = 108/265 (39%), Gaps = 37/265 (13%)
Query: 207 FLKKQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAYFELFNYYKQ 266
+++K +E+G A+ LL + EK+ + K+A A +L Y Q
Sbjct: 97 WIEKSAEQGYPAAEALLGNIYHFGRKGIPEDLEKAFYWTEKAANHGVTSAQRDLALIYYQ 156
Query: 267 Q--------KKDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHDDGSGENE 318
Q + K+ Y++ K+A+ ++ + + Y +G + + + +N+
Sbjct: 157 QALAHKISPSEGQQKALYWMEKAADRGDLEAKFQMANVYLSGIPNLPQY------AADNK 210
Query: 319 ELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSS-IC 377
+ +C+D + NL + LG +Y G +D ++ +++ +
Sbjct: 211 KAFSLCKDAAEKGNL-----------KAAALLGKIYYSGDSGKVDQKASFYWTEKAARLG 259
Query: 378 DHHQEHNPEITFYYLGLCLFYG--KGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLN 435
D E+N + FY G + Y+M+ ++ + PA A+GR + +
Sbjct: 260 DPFAEYN---------MARFYNPQNGSKRVDPDTAFYWMEKSANQGFHPAESALGRFYRD 310
Query: 436 GEGISQNFMQAKLYFTTAKSQGSNQ 460
G+G ++ +A ++ A G+ Q
Sbjct: 311 GQGTGKDLQKAVFWYNRAAEGGNIQ 335
>gi|54295067|ref|YP_127482.1| hypothetical protein lpl2147
[Legionella pneumophila str. Lens]
emb|CAH16387.1| hypothetical protein [Legionella pneumophila str. Lens]
Length = 373
Score = 54.3 bits (129), Expect = 9e-06
Identities = 75/307 (24%), Positives = 120/307 (38%), Gaps = 63/307 (20%)
Query: 200 YNKENKE-FLKKQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAYF 258
YN E E L + +GN AQ LL ++K+ ++ K+A+QNNA +
Sbjct: 68 YNPEKTEQLLLASANQGNVDAQVLLAGFYWYLNTPE--GYKKAFEWYQKAADQNNADGQY 125
Query: 259 ELFNYYKQ-----QKKDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHDDG 313
L Y Q D Y K+AE ++ + +G YN +D G
Sbjct: 126 GLGYMYDTGTGVPQNSDTAMVWYK--KAAEQGNSNAALAIG---YN----------YDTG 170
Query: 314 SGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQ 373
+G ++ Y KA +L A N LG+ + G GV D+ +A F +
Sbjct: 171 TGVKKDKTQALNWYAKAADLGNASAQYN--------LGLMYEQGDGVPKDFQKAAEYFEK 222
Query: 374 SSICDHHQEHNP----------------EITFYY--------------LGLCLFYGKGVL 403
++ DH + + F+Y L FYG GV
Sbjct: 223 AANQDHAKSQLELGYLYDSGKLGKSDLQKAAFWYQKSADLGNANAQFNLADMYFYGDGVG 282
Query: 404 KNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTAKSQG-SNQDR 462
K+ + Y+M+ A+ Y A +G + +G G++ + ++A +FT AKS G
Sbjct: 283 KSLEQSV-YWMQKAAEQGYGKAQNQLGIYYRDGIGVAADPVKAYAWFTAAKSNGFEKAAS 341
Query: 463 NIQDVNK 469
N D+ K
Sbjct: 342 NASDLEK 348
Score = 45.8 bits (107), Expect = 0.003
Identities = 62/249 (24%), Positives = 108/249 (42%), Gaps = 27/249 (10%)
Query: 238 FEKSLKYLTKSAEQNNAKAYFELFN-YYKQQ--KKDLIKSKYYLLKSAEFIYEDSIILLG 294
+EK+ L+ A++ +AKA + L YY Q + K++ LL SA D+ +LL
Sbjct: 34 YEKAFILLSPEADKGDAKAQYLLGKMYYNAQGVTYNPEKTEQLLLASANQGNVDAQVLLA 93
Query: 295 DYYY-----NGFKTI---------DNHDDHDDGSGENEELNL-ICQDYFKAFNLFKIGAS 339
+Y+ G+K N+ D G G + + Q+ A +K A
Sbjct: 94 GFYWYLNTPEGYKKAFEWYQKAADQNNADGQYGLGYMYDTGTGVPQNSDTAMVWYKKAAE 153
Query: 340 LNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFYG 399
+SN+ +G + G GV D +A + +++ + Y LGL G
Sbjct: 154 QG-NSNAALAIGYNYDTGTGVKKDKTQALNWYAKAADLGNASAQ------YNLGLMYEQG 206
Query: 400 KGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTAKSQG-S 458
GV K+ K EYF K+A+ +H LE +G + +G+ + +A ++ + G +
Sbjct: 207 DGVPKDFQKAAEYFEKAANQDHAKSQLE-LGYLYDSGKLGKSDLQKAAFWYQKSADLGNA 265
Query: 459 NQDRNIQDV 467
N N+ D+
Sbjct: 266 NAQFNLADM 274
>gi|16420289|gb|AAL20675.1| putative TPR repeat protein [Salmonella
typhimurium LT2]
ref|NP_460716.1| tetratricopeptide repeat protein [Salmonella typhimurium LT2]
Length = 509
Score = 54.3 bits (129), Expect = 9e-06
Identities = 67/308 (21%), Positives = 121/308 (38%), Gaps = 61/308 (19%)
Query: 208 LKKQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAYFEL---FNYY 264
L++++E+G+ AQ L +++ ++K+L K+ +Q + +YF L +NY
Sbjct: 42 LEQKAEQGDESAQFSLGSWYAEGRYVKP-DYKLAIKWLEKAGKQGSDFSYFILGYHYNYG 100
Query: 265 KQQKKDLIKSKYYLLKSAEFIYEDSIILLGDYYYNG------------------FKTIDN 306
+ K+ + K+AE + +LGD Y G T D
Sbjct: 101 ENFPLSRQKALEWYRKAAELGDSSTQEILGDAYMYGDGFPQNTQLALEWYRKAASPTNDA 160
Query: 307 HDDHDDGSGENEELNL---------ICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYG 357
GS + + L + QDY + L + A N+ + LG+ ++YG
Sbjct: 161 GVVRGQGSASSAQFKLGVMYAHGQGVPQDYQQTAILMRKAAE-NMYYPAQLYLGVAYFYG 219
Query: 358 RGVTIDYNEAYRLFYQSSICDHHQEHNPEITF---------------------------- 389
GV DY +A + + H P
Sbjct: 220 EGVPQDYRQAVYWLNEGIPGSYTPGHIPLNALYDKAHPADRVHSQTWYRKTAQRVMAKVQ 279
Query: 390 YYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLY 449
Y G+ + G +LK+ E++ ++A+ + A +A+G F+ GEG+SQ++ QA +
Sbjct: 280 YNFGVWYYNGYHLLKDHNLALEWYRRAAA-QGLAEAQDAIGVMFMQGEGVSQDYQQALAW 338
Query: 450 FTTAKSQG 457
+ A QG
Sbjct: 339 YRKAARQG 346
Score = 52.0 bits (123), Expect = 4e-05
Identities = 47/208 (22%), Positives = 94/208 (44%), Gaps = 25/208 (12%)
Query: 263 YYKQQKKDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHD--------DHDDGS 314
Y K D + S+ + K+A+ + G +YYNG+ + +H+ G
Sbjct: 252 YDKAHPADRVHSQTWYRKTAQRVMAKVQYNFGVWYYNGYHLLKDHNLALEWYRRAAAQGL 311
Query: 315 GENEEL--------NLICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNE 366
E ++ + QDY +A ++ A + + + T LGI +GRGV +
Sbjct: 312 AEAQDAIGVMFMQGEGVSQDYQQALAWYRKAARQGLPA-AQTHLGIMSAFGRGVAQSDRQ 370
Query: 367 AYRLFYQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPAL 426
A + +++ D + Y LG+ G+GV +N ++++K+A ++PA
Sbjct: 371 AIAWYRKAAKQDFAKAQ------YQLGVAYSTGRGVPENSRNALKWYLKAAE-QGFTPAQ 423
Query: 427 EAVGRCFLNG-EGISQNFMQAKLYFTTA 453
A+G + +G +G+ ++ QA +++ A
Sbjct: 424 SALGEIYAHGRQGVPKDNKQAYIWYYMA 451
>gi|15612110|ref|NP_223762.1| hypothetical protein jhp1045
[Helicobacter pylori J99]
gb|AAD06623.1| putative [Helicobacter pylori J99]
pir||G71856 hypothetical protein jhp1045 - Helicobacter pylori (strain J99)
Length = 256
Score = 54.3 bits (129), Expect = 9e-06
Identities = 46/165 (27%), Positives = 76/165 (45%), Gaps = 26/165 (15%)
Query: 294 GDYYYNGFKTIDNHDDHDDGSGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGIC 353
G+Y Y G + +N ++Y +A + +K A N +S + LGI
Sbjct: 31 GNYIYKGEEAYNN------------------KEYERAASFYK-SAIKNGESLAYILLGIM 71
Query: 354 FYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYF 413
+ GRGV DY +A F ++ D + +N LG+ GKGV K++ K EYF
Sbjct: 72 YENGRGVPKDYKKAVEYFQKAVDNDIPRGYN------NLGVMYKEGKGVPKDEKKAVEYF 125
Query: 414 MKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTAKSQGS 458
+ A+ Y+ A +G ++ G G+ N+ +A F A +G+
Sbjct: 126 -RIATEKGYTNAYINLGIMYMEGRGVPSNYAKATECFRKAMHKGN 169
Score = 43.5 bits (101), Expect = 0.016
Identities = 54/227 (23%), Positives = 93/227 (40%), Gaps = 23/227 (10%)
Query: 237 NFEKSLKYLTKSAEQNNAKAYFELFNYYKQQKKDLIKSKYYLLKSAEFIYEDSIILLGDY 296
+ E+ Y+ K E N K Y ++YK K+ Y LL +YE+ + D
Sbjct: 26 HLEQKGNYIYKGEEAYNNKEYERAASFYKSAIKNGESLAYILL---GIMYENGRGVPKD- 81
Query: 297 YYNGFKTIDNHDDHDDGSGEN------EELNLICQDYFKAFNLFKIGASLNVDSNSLTKL 350
Y + D+D G N +E + +D KA F+I +N+ L
Sbjct: 82 YKKAVEYFQKAVDNDIPRGYNNLGVMYKEGKGVPKDEKKAVEYFRIATEKGY-TNAYINL 140
Query: 351 GICFYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFYG----KGVLKNQ 406
GI + GRGV +Y +A F ++ H + Y L ++Y G+ ++
Sbjct: 141 GIMYMEGRGVPSNYAKATECFRKAM-------HKGNVEAYILLGDIYYSGNDQLGIEPDK 193
Query: 407 CKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTA 453
K Y+ +A ++ S A E + + G G+ ++ +A+ Y A
Sbjct: 194 DKAVVYYKMAADVSS-SRAYEGLSESYRYGLGVEKDKKKAEEYMQKA 239
>gi|1786864|gb|AAC73745.1| orf, hypothetical protein; conserved
hypothetical protein [Escherichia coli K12]
dbj|BAA35291.1| Sel-1 protein [Escherichia coli K12]
pir||B64799 hypothetical protein b0644 - Escherichia coli (strain K-12)
gb|AAB40845.1| hypothetical protein [Escherichia coli]
ref|NP_415177.3| hypothetical protein b0644 [Escherichia coli K12]
Length = 327
Score = 54.3 bits (129), Expect = 9e-06
Identities = 59/252 (23%), Positives = 109/252 (42%), Gaps = 33/252 (13%)
Query: 210 KQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAYFELFNYYKQQK- 268
+++EKG+ AQ ++ + EK+ +L +AEQ + +A + L Y + K
Sbjct: 20 ERAEKGDCEAQYIVGFYYNRDSAIDSPDDEKAFYWLKLAAEQGHCEAQYSLGQKYTEDKS 79
Query: 269 --KDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHDDGSGENEELNLICQD 326
KD ++ ++L K+A + + LG T+D + +
Sbjct: 80 RHKDNEQAIFWLKKAALQGHTFASNALG-------WTLDRGE---------------APN 117
Query: 327 YFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPE 386
Y +A ++I A + S + LG + G GV DY A+ + Q+++ H N
Sbjct: 118 YKEAVVWYQIAAESGM-SYAQNNLGWMYRNGNGVAKDYALAFFWYKQAALQGHSDAQNNL 176
Query: 387 ITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQA 446
Y GKGV +N+ +++KSA + + + + GEG+ Q++ QA
Sbjct: 177 ADLYE------DGKGVAQNKTLAAFWYLKSAQQGNRHAQFQ-IAWDYNAGEGVDQDYKQA 229
Query: 447 KLYFTTAKSQGS 458
++ A +QGS
Sbjct: 230 MYWYLKAAAQGS 241
Score = 37.7 bits (86), Expect = 0.87
Identities = 24/93 (25%), Positives = 42/93 (44%), Gaps = 14/93 (15%)
Query: 309 DHDDGSGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAY 368
D++ G G +++ Y KA +GA +N+ G + +G+GV DY A+
Sbjct: 215 DYNAGEGVDQDYKQAMYWYLKAAAQGSVGAYVNI--------GYMYKHGQGVEKDYQAAF 266
Query: 369 RLFYQSSICDHHQEHNPEITFYYLGLCLFYGKG 401
F +++ C N +Y L + YG+G
Sbjct: 267 EWFTKAAEC------NDATAWYNLAIMYHYGEG 293
>gi|18271675|sp|P77234|YBEQ_ECOLI Hypothetical protein ybeQ
Length = 325
Score = 54.3 bits (129), Expect = 9e-06
Identities = 59/252 (23%), Positives = 109/252 (42%), Gaps = 33/252 (13%)
Query: 210 KQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAYFELFNYYKQQK- 268
+++EKG+ AQ ++ + EK+ +L +AEQ + +A + L Y + K
Sbjct: 18 ERAEKGDCEAQYIVGFYYNRDSAIDSPDDEKAFYWLKLAAEQGHCEAQYSLGQKYTEDKS 77
Query: 269 --KDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHDDGSGENEELNLICQD 326
KD ++ ++L K+A + + LG T+D + +
Sbjct: 78 RHKDNEQAIFWLKKAALQGHTFASNALG-------WTLDRGE---------------APN 115
Query: 327 YFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPE 386
Y +A ++I A + S + LG + G GV DY A+ + Q+++ H N
Sbjct: 116 YKEAVVWYQIAAESGM-SYAQNNLGWMYRNGNGVAKDYALAFFWYKQAALQGHSDAQNNL 174
Query: 387 ITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQA 446
Y GKGV +N+ +++KSA + + + + GEG+ Q++ QA
Sbjct: 175 ADLYE------DGKGVAQNKTLAAFWYLKSAQQGNRHAQFQ-IAWDYNAGEGVDQDYKQA 227
Query: 447 KLYFTTAKSQGS 458
++ A +QGS
Sbjct: 228 MYWYLKAAAQGS 239
Score = 37.7 bits (86), Expect = 0.87
Identities = 24/93 (25%), Positives = 42/93 (44%), Gaps = 14/93 (15%)
Query: 309 DHDDGSGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAY 368
D++ G G +++ Y KA +GA +N+ G + +G+GV DY A+
Sbjct: 213 DYNAGEGVDQDYKQAMYWYLKAAAQGSVGAYVNI--------GYMYKHGQGVEKDYQAAF 264
Query: 369 RLFYQSSICDHHQEHNPEITFYYLGLCLFYGKG 401
F +++ C N +Y L + YG+G
Sbjct: 265 EWFTKAAEC------NDATAWYNLAIMYHYGEG 291
>gi|54297265|ref|YP_123634.1| hypothetical protein lpp1310
[Legionella pneumophila str. Paris]
emb|CAH12461.1| hypothetical protein [Legionella pneumophila str. Paris]
Length = 376
Score = 53.9 bits (128), Expect = 1e-05
Identities = 50/204 (24%), Positives = 95/204 (46%), Gaps = 32/204 (15%)
Query: 259 ELFNYYKQQKKDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHDDGSGENE 318
EL + + D + +L+++A+ E+++ LLG Y G+ N+++
Sbjct: 20 ELVGFAAFENGDYTTAYPHLMQAAKEGNEEAMYLLGRMYQYGYGVTTNYEE--------- 70
Query: 319 ELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYY--GRGVTIDYNEAYRLFYQSSI 376
A N ++ A N N+L +L + F Y G+GV+ D+ EA++ + +++
Sbjct: 71 -----------ARNWYQKAADKN---NALAQLSLGFMYDTGKGVSQDFAEAFKWYMKAA- 115
Query: 377 CDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNG 436
++ NP I +GL G GV + K F +F K+A YS A +G ++ G
Sbjct: 116 ----EQGNP-IAQRNIGLMYATGDGVAASDDKAFTWFKKAAE-QGYSKAQVNLGYQYMMG 169
Query: 437 EGISQNFMQAKLYFTTAKSQGSNQ 460
+G ++ +A ++ A QG +
Sbjct: 170 KGTPKDVKKAFEWYQKAAEQGDEK 193
Score = 45.4 bits (106), Expect = 0.004
Identities = 60/261 (22%), Positives = 104/261 (38%), Gaps = 33/261 (12%)
Query: 202 KENKEFLKKQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAYFELF 261
+E + + +K ++K N++AQ L +F ++ K+ K+AEQ N A +
Sbjct: 69 EEARNWYQKAADKNNALAQLSLGFMYDTGKGVSQ-DFAEAFKWYMKAAEQGNPIAQRNIG 127
Query: 262 NYYKQQKKDLI---KSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHDDGSGENE 318
Y K+ + K+AE Y + + LG Y G T
Sbjct: 128 LMYATGDGVAASDDKAFTWFKKAAEQGYSKAQVNLGYQYMMGKGTP-------------- 173
Query: 319 ELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICD 378
+D KAF ++ A D LG+ Y G+ I ++ ++ S +
Sbjct: 174 ------KDVKKAFEWYQKAAEQG-DEKGEYSLGL-LYTGQEGGISADDKAAFYWFSQAAN 225
Query: 379 H-HQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGE 437
H H + +YYL G GV + K Y+ +SA+ A +G+ L G
Sbjct: 226 HGHVNAQTYLAYYYLK-----GYGVDADPVKA-AYWYQSAAEKGQPEAQAQLGQLLLTGT 279
Query: 438 GISQNFMQAKLYFTTAKSQGS 458
G+ +++ QA +F + QG+
Sbjct: 280 GVDKDYQQAAYWFGKSAHQGN 300
Score = 45.1 bits (105), Expect = 0.005
Identities = 59/255 (23%), Positives = 109/255 (42%), Gaps = 35/255 (13%)
Query: 208 LKKQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAYFELFNYY--- 264
L + +++GN A LL N+E++ + K+A++NNA A L Y
Sbjct: 39 LMQAAKEGNEEAMYLLGRMYQYGYGVTT-NYEEARNWYQKAADKNNALAQLSLGFMYDTG 97
Query: 265 KQQKKDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHDDGSGENEELNLIC 324
K +D ++ + +K+AE + +G Y G DG +++
Sbjct: 98 KGVSQDFAEAFKWYMKAAEQGNPIAQRNIGLMYATG-----------DGVAASDD----- 141
Query: 325 QDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICDHHQEHN 384
KAF FK A S + LG + G+G D +A+ + +++ E
Sbjct: 142 ----KAFTWFKKAAEQGY-SKAQVNLGYQYMMGKGTPKDVKKAFEWYQKAA------EQG 190
Query: 385 PEITFYYLGLCLFYGK--GVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQN 442
E Y LGL L+ G+ G+ + F +F ++A+ H + A + +L G G+ +
Sbjct: 191 DEKGEYSLGL-LYTGQEGGISADDKAAFYWFSQAANHGHVN-AQTYLAYYYLKGYGVDAD 248
Query: 443 FMQAKLYFTTAKSQG 457
++A ++ +A +G
Sbjct: 249 PVKAAYWYQSAAEKG 263
>gi|15612089|ref|NP_223741.1| hypothetical protein jhp1024
[Helicobacter pylori J99]
gb|AAD06595.1| putative [Helicobacter pylori J99]
pir||C71859 hypothetical protein jhp1024 - Helicobacter pylori (strain J99)
sp|Q9ZKB5|HCPC_HELPJ Putative beta-lactamase hcpC precursor (Cysteine-rich protein C)
Length = 290
Score = 53.9 bits (128), Expect = 1e-05
Identities = 55/220 (25%), Positives = 91/220 (41%), Gaps = 31/220 (14%)
Query: 237 NFEKSLKYLTKSAEQNNAKAYFELFNYYKQQ---KKDLIKSKYYLLKSAEFIYEDSIILL 293
+F ++ KY K+ + F L Y Q +K+L K+ + K+ + Y + LL
Sbjct: 44 DFTQAKKYFEKACDLKENSGCFNLGVLYYQGHGVEKNLKKAASFYSKACDLNYSNGCHLL 103
Query: 294 GDYYYNGFKTIDNHDDHDDGSGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGIC 353
G+ YY+ G G ++ N Q Y KA +L + LG
Sbjct: 104 GNLYYS-------------GQGVSQNTNKALQYYSKACDL--------KYAEGCASLGGI 142
Query: 354 FYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYF 413
++ G+ VT D+ +A F + CD + I LG G+G K+ K +
Sbjct: 143 YHDGKVVTRDFKKAVEYF--TKACDLNDGDGCTI----LGSLYDAGRGTPKDLKKALASY 196
Query: 414 MKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTA 453
K+ L SP G + +GEG ++NF +A ++ A
Sbjct: 197 DKACDLKD-SPGCFNAGNMYHHGEGAAKNFKEALARYSKA 235
Score = 44.7 bits (104), Expect = 0.007
Identities = 33/117 (28%), Positives = 54/117 (45%), Gaps = 11/117 (9%)
Query: 337 GASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCL 396
G D L LG Y + D+ +A + F ++ CD + + LG+
Sbjct: 22 GLMAEQDPKELVGLGAKSYKEQ----DFTQAKKYFEKA--CDLKENSG----CFNLGVLY 71
Query: 397 FYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTA 453
+ G GV KN K ++ K+ LN YS +G + +G+G+SQN +A Y++ A
Sbjct: 72 YQGHGVEKNLKKAASFYSKACDLN-YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKA 127
>gi|50085803|ref|YP_047313.1| conserved hypothetical protein;
putative signal peptide [Acinetobacter sp. ADP1]
emb|CAG69491.1| conserved hypothetical protein; putative signal peptide
[Acinetobacter sp. ADP1]
Length = 240
Score = 53.5 bits (127), Expect = 2e-05
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 8/116 (6%)
Query: 350 LGICFYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKG 409
LG+ + G GV+ + + A+ F +++ H Q Y +G G GV KN +
Sbjct: 92 LGLMYMTGTGVSQNQSTAFEWFSKAAKFGHAQAQ------YTVGRMYSEGVGVEKNMPQA 145
Query: 410 FEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQA-KLYFTTAKSQGSNQDRNI 464
FE+ K+A L Y PA ++G + +G G++QN QA K Y A+ Q SN N+
Sbjct: 146 FEWIQKAA-LQGYPPAEFSLGLMYNDGRGVAQNKQQAIKWYTQAAEHQQSNAQYNL 200
Score = 48.1 bits (113), Expect = 6e-04
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 350 LGICFYYG-RGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCK 408
LG+ + G +GVT D +A + ++ D + + Y LGL G GV +NQ
Sbjct: 55 LGMMYLSGEQGVTKDTTQALKWL---TLADQNGSVGAK---YSLGLMYMTGTGVSQNQST 108
Query: 409 GFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTAKSQG 457
FE+F K+A H + A VGR + G G+ +N QA + A QG
Sbjct: 109 AFEWFSKAAKFGH-AQAQYTVGRMYSEGVGVEKNMPQAFEWIQKAALQG 156
Score = 38.9 bits (89), Expect = 0.39
Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 11/147 (7%)
Query: 323 ICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICDHHQE 382
+ Q+ AF F A T +G + G GV + +A+ ++++ Q
Sbjct: 102 VSQNQSTAFEWFSKAAKFGHAQAQYT-VGRMYSEGVGVEKNMPQAFEWIQKAAL----QG 156
Query: 383 HNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQN 442
+ P + LGL G+GV +N+ + +++ ++A + S A +G +LNGEG S+N
Sbjct: 157 YPP--AEFSLGLMYNDGRGVAQNKQQAIKWYTQAAE-HQQSNAQYNLGIMYLNGEGTSKN 213
Query: 443 FMQAKLYFTTAKSQGSNQDRNIQDVNK 469
AK + A + G D++ +DV K
Sbjct: 214 PPLAKKWLQRAANAG---DQDAKDVLK 237
>gi|54294242|ref|YP_126657.1| hypothetical protein lpl1307
[Legionella pneumophila str. Lens]
emb|CAH15547.1| hypothetical protein [Legionella pneumophila str. Lens]
Length = 376
Score = 53.5 bits (127), Expect = 2e-05
Identities = 50/209 (23%), Positives = 95/209 (44%), Gaps = 28/209 (13%)
Query: 252 NNAKAYFELFNYYKQQKKDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHD 311
N A EL + + D + +L+++A+ E+++ LLG Y G+ N+++
Sbjct: 13 NTAVLADELVGFAAFENGDYTTAYPHLMQAAKDGNEEAMYLLGRMYQYGYGVTTNYEE-- 70
Query: 312 DGSGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLF 371
A N ++ A N D+ + LG + G+GV+ D+ EA++ +
Sbjct: 71 ------------------ARNWYQKAADKN-DALAQLSLGFMYDTGKGVSQDFAEAFKWY 111
Query: 372 YQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGR 431
+++ ++ NP I +GL G GV + K F +F K+A YS A +G
Sbjct: 112 MKAA-----EQGNP-IAQRNIGLMYATGDGVTASDDKAFTWFKKAAE-QGYSKAQVNLGY 164
Query: 432 CFLNGEGISQNFMQAKLYFTTAKSQGSNQ 460
++ G+G ++ +A ++ A QG +
Sbjct: 165 QYMMGKGTPKDVKKAFEWYQKAAEQGDEK 193
Score = 43.5 bits (101), Expect = 0.016
Identities = 59/261 (22%), Positives = 104/261 (39%), Gaps = 33/261 (12%)
Query: 202 KENKEFLKKQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAYFELF 261
+E + + +K ++K +++AQ L +F ++ K+ K+AEQ N A +
Sbjct: 69 EEARNWYQKAADKNDALAQLSLGFMYDTGKGVSQ-DFAEAFKWYMKAAEQGNPIAQRNIG 127
Query: 262 NYYKQQKKDLI---KSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHDDGSGENE 318
Y K+ + K+AE Y + + LG Y G T
Sbjct: 128 LMYATGDGVTASDDKAFTWFKKAAEQGYSKAQVNLGYQYMMGKGTP-------------- 173
Query: 319 ELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICD 378
+D KAF ++ A D LG+ Y G+ I ++ ++ S +
Sbjct: 174 ------KDVKKAFEWYQKAAEQG-DEKGEYSLGL-LYTGQEGGISADDKAAFYWFSQAAN 225
Query: 379 H-HQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGE 437
H H + +YYL G GV + K Y+ +SA+ A +G+ L G
Sbjct: 226 HGHVNAQTYLAYYYLK-----GYGVDADPVKA-AYWYQSAAEKGQPEAQAQLGQLLLTGT 279
Query: 438 GISQNFMQAKLYFTTAKSQGS 458
G+ +++ QA +F + QG+
Sbjct: 280 GVDKDYQQAAYWFGKSAHQGN 300
Score = 41.6 bits (96), Expect = 0.060
Identities = 58/255 (22%), Positives = 108/255 (41%), Gaps = 35/255 (13%)
Query: 208 LKKQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAYFELFNYY--- 264
L + ++ GN A LL N+E++ + K+A++N+A A L Y
Sbjct: 39 LMQAAKDGNEEAMYLLGRMYQYGYGVTT-NYEEARNWYQKAADKNDALAQLSLGFMYDTG 97
Query: 265 KQQKKDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHDDGSGENEELNLIC 324
K +D ++ + +K+AE + +G Y G DG +++
Sbjct: 98 KGVSQDFAEAFKWYMKAAEQGNPIAQRNIGLMYATG-----------DGVTASDD----- 141
Query: 325 QDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICDHHQEHN 384
KAF FK A S + LG + G+G D +A+ + +++ E
Sbjct: 142 ----KAFTWFKKAAEQGY-SKAQVNLGYQYMMGKGTPKDVKKAFEWYQKAA------EQG 190
Query: 385 PEITFYYLGLCLFYGK--GVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQN 442
E Y LGL L+ G+ G+ + F +F ++A+ H + A + +L G G+ +
Sbjct: 191 DEKGEYSLGL-LYTGQEGGISADDKAAFYWFSQAANHGHVN-AQTYLAYYYLKGYGVDAD 248
Query: 443 FMQAKLYFTTAKSQG 457
++A ++ +A +G
Sbjct: 249 PVKAAYWYQSAAEKG 263
>gi|54298117|ref|YP_124486.1| hypothetical protein lpp2174
[Legionella pneumophila str. Paris]
emb|CAH13326.1| hypothetical protein [Legionella pneumophila str. Paris]
Length = 373
Score = 53.1 bits (126), Expect = 2e-05
Identities = 73/308 (23%), Positives = 119/308 (37%), Gaps = 65/308 (21%)
Query: 200 YNKENKE-FLKKQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAYF 258
YN E E L + +GN AQ LL ++K+ ++ K+A+QNNA +
Sbjct: 68 YNPEKTEQLLLASANQGNVDAQVLLAGFYWYLNTPE--GYKKAFEWYQKAADQNNADGQY 125
Query: 259 ELFNYYKQ-----QKKDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHDDG 313
L Y Q D Y K+AE ++ + +G YN +D G
Sbjct: 126 GLGYMYDTGTGVPQNSDTAMVWYK--KAAEQGNSNAALAIG---YN----------YDTG 170
Query: 314 SGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQ 373
+G ++ Y KA +L A N LG+ + G GV DY +A +++
Sbjct: 171 TGVKKDKTQALNWYAKAADLGNASAQYN--------LGLMYEQGDGVPKDYQKAAE-YFE 221
Query: 374 SSICDHHQEHNPEITFYY-------------------------------LGLCLFYGKGV 402
+ H + E+ + Y L FYG GV
Sbjct: 222 KAANQGHAKSQLELGYLYDSGKLGKSDLQKAAFWYQKSADLGNANAQFNLADMYFYGDGV 281
Query: 403 LKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTAKSQG-SNQD 461
K+ + Y+M+ A+ Y A +G + +G G++ + ++A +FT AK+ G
Sbjct: 282 GKSLEQSV-YWMQKAAEQGYGKAQNQLGIYYRDGIGVAADPVKAYAWFTAAKNNGFEKAT 340
Query: 462 RNIQDVNK 469
N D+ K
Sbjct: 341 SNASDLEK 348
Score = 46.2 bits (108), Expect = 0.002
Identities = 62/249 (24%), Positives = 107/249 (42%), Gaps = 27/249 (10%)
Query: 238 FEKSLKYLTKSAEQNNAKAYFELFN-YYKQQ--KKDLIKSKYYLLKSAEFIYEDSIILLG 294
+EK+ L+ A++ +AKA + L YY Q + K++ LL SA D+ +LL
Sbjct: 34 YEKAFILLSPEADKGDAKAQYLLGKMYYNAQGVTYNPEKTEQLLLASANQGNVDAQVLLA 93
Query: 295 DYYY-----NGFKTI---------DNHDDHDDGSGENEELNL-ICQDYFKAFNLFKIGAS 339
+Y+ G+K N+ D G G + + Q+ A +K A
Sbjct: 94 GFYWYLNTPEGYKKAFEWYQKAADQNNADGQYGLGYMYDTGTGVPQNSDTAMVWYKKAAE 153
Query: 340 LNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFYG 399
+SN+ +G + G GV D +A + +++ + Y LGL G
Sbjct: 154 QG-NSNAALAIGYNYDTGTGVKKDKTQALNWYAKAADLGNASAQ------YNLGLMYEQG 206
Query: 400 KGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTAKSQG-S 458
GV K+ K EYF K+A+ H LE +G + +G+ + +A ++ + G +
Sbjct: 207 DGVPKDYQKAAEYFEKAANQGHAKSQLE-LGYLYDSGKLGKSDLQKAAFWYQKSADLGNA 265
Query: 459 NQDRNIQDV 467
N N+ D+
Sbjct: 266 NAQFNLADM 274
>gi|23467940|ref|ZP_00123516.1| COG0790: FOG: TPR repeat, SEL1
subfamily [Haemophilus somnus 129PT]
Length = 181
Score = 53.1 bits (126), Expect = 2e-05
Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 7/135 (5%)
Query: 325 QDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICDHHQEHN 384
Q+Y AF LFK A D+N+ LG+ + YG G+T + +A + +++ + N
Sbjct: 39 QNYSDAFPLFKQLAEQG-DANAQHNLGLMYEYGDGITQNDQQAVYWYTKAAEQGYANAQN 97
Query: 385 PEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFM 444
Y G GKG+ +N + ++ K+A Y+ A +G + NG+G+ +N
Sbjct: 98 NLGLMYTDG-----GKGITQNYKQAVYWYTKAAEQG-YANAQYNLGVMYANGQGVQRNVS 151
Query: 445 QAKLYFTTAKSQGSN 459
+AK Y+ A G N
Sbjct: 152 KAKQYYRLACDNGLN 166
>gi|56542603|gb|AAV88757.1| conserved hypothetical protein
[Zymomonas mobilis subsp. mobilis ZM4]
ref|YP_161868.1| hypothetical protein ZMO0133 [Zymomonas mobilis subsp. mobilis ZM4]
Length = 246
Score = 53.1 bits (126), Expect = 2e-05
Identities = 58/217 (26%), Positives = 99/217 (44%), Gaps = 33/217 (15%)
Query: 245 LTKSAEQNNAKAYFELFNYYKQQKKDLIKSK----YYLLKSAEFIYEDSIILLGDYYYNG 300
L K+AE+ +AKA + L N Y + +D+ KS + KSA Y + LG Y +G
Sbjct: 10 LQKAAERGDAKAQYALGNAY-SKGQDVSKSDEQAVSWYQKSASQGYAPAQAALGYAYSSG 68
Query: 301 FKTIDNHDDHDDGSGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGV 360
HDD +A + F+ A+ + + + L I +Y GRGV
Sbjct: 69 LGV--THDDQ------------------QAVSFFQKAANQGL-AEAQYSLAIAYYTGRGV 107
Query: 361 TIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMKSASLN 420
T +Y +A F +S+ +Q P +YLG+ G G+ ++ + +F K+A
Sbjct: 108 TQNYEQASFWFQRSA----NQGFVP--AQFYLGVMYRNGAGIPEDDDRALFWFHKAAD-K 160
Query: 421 HYSPALEAVGRCFLNGEGISQNFMQAKLYFTTAKSQG 457
Y+ A +G + G+ + ++ QA ++ A +QG
Sbjct: 161 GYADAQYNLGLIYHEGKVVKKDEKQATFWYQQAANQG 197
>gi|52842435|ref|YP_096234.1| TPR repeat protein, protein-protein
interaction [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gb|AAU28287.1| TPR repeat protein, protein-protein interaction [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
Length = 375
Score = 52.8 bits (125), Expect = 3e-05
Identities = 73/308 (23%), Positives = 119/308 (37%), Gaps = 65/308 (21%)
Query: 200 YNKENKE-FLKKQSEKGNSIAQCLLXXXXXXXXXXXXVNFEKSLKYLTKSAEQNNAKAYF 258
YN E E L + +GN AQ LL ++K+ ++ K+A+QNNA +
Sbjct: 70 YNPEKTEQLLLASANQGNVDAQVLLAGFYWYLNTPE--GYKKAFEWYQKAADQNNADGQY 127
Query: 259 ELFNYYKQ-----QKKDLIKSKYYLLKSAEFIYEDSIILLGDYYYNGFKTIDNHDDHDDG 313
L Y Q D Y K+AE ++ + +G YN +D G
Sbjct: 128 GLGYMYDTGTGVPQNSDTAMVWYK--KAAEQGNSNAALAIG---YN----------YDTG 172
Query: 314 SGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQ 373
+G ++ Y KA +L A N LG+ + G GV DY +A +++
Sbjct: 173 TGVKKDKTQALNWYAKAADLGNASAQYN--------LGLMYEQGDGVPKDYQKAAE-YFE 223
Query: 374 SSICDHHQEHNPEITFYY-------------------------------LGLCLFYGKGV 402
+ H + E+ + Y L FYG GV
Sbjct: 224 KAANQGHAKSQLELGYLYDSGKLGKSDLQKAAFWYQKSADLGNANAQFNLADMYFYGDGV 283
Query: 403 LKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTAKSQG-SNQD 461
K+ + Y+M+ A+ Y A +G + +G G++ + ++A +FT AK+ G
Sbjct: 284 GKSLEQSV-YWMQKAAEQGYGKAQNQLGIYYRDGIGVAADPVKAYAWFTAAKNNGFEKAA 342
Query: 462 RNIQDVNK 469
N D+ K
Sbjct: 343 SNASDLEK 350
Score = 46.2 bits (108), Expect = 0.002
Identities = 62/249 (24%), Positives = 107/249 (42%), Gaps = 27/249 (10%)
Query: 238 FEKSLKYLTKSAEQNNAKAYFELFN-YYKQQ--KKDLIKSKYYLLKSAEFIYEDSIILLG 294
+EK+ L+ A++ +AKA + L YY Q + K++ LL SA D+ +LL
Sbjct: 36 YEKAFILLSPEADKGDAKAQYLLGKMYYNAQGVTYNPEKTEQLLLASANQGNVDAQVLLA 95
Query: 295 DYYY-----NGFKTI---------DNHDDHDDGSGENEELNL-ICQDYFKAFNLFKIGAS 339
+Y+ G+K N+ D G G + + Q+ A +K A
Sbjct: 96 GFYWYLNTPEGYKKAFEWYQKAADQNNADGQYGLGYMYDTGTGVPQNSDTAMVWYKKAAE 155
Query: 340 LNVDSNSLTKLGICFYYGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFYG 399
+SN+ +G + G GV D +A + +++ + Y LGL G
Sbjct: 156 QG-NSNAALAIGYNYDTGTGVKKDKTQALNWYAKAADLGNASAQ------YNLGLMYEQG 208
Query: 400 KGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLYFTTAKSQG-S 458
GV K+ K EYF K+A+ H LE +G + +G+ + +A ++ + G +
Sbjct: 209 DGVPKDYQKAAEYFEKAANQGHAKSQLE-LGYLYDSGKLGKSDLQKAAFWYQKSADLGNA 267
Query: 459 NQDRNIQDV 467
N N+ D+
Sbjct: 268 NAQFNLADM 276
>gi|52841406|ref|YP_095205.1| TPR repeat protein [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
gb|AAU27258.1| TPR repeat protein [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
Length = 495
Score = 52.8 bits (125), Expect = 3e-05
Identities = 63/270 (23%), Positives = 111/270 (40%), Gaps = 66/270 (24%)
Query: 239 EKSLKYLTKSAEQNNAKAYFELFNYYKQ---QKKDLIKSKYYLLKSAEFIYEDSIILLGD 295
+K++ + K+A Q KA L Y+Q +KD+ K+ Y+ K+AE + + LG
Sbjct: 250 KKAIYWYEKAAAQGGEKAQNNLGYIYEQGIGTEKDMKKAIYWYEKAAENGFTLAQNNLGV 309
Query: 296 YYYNGFKTIDNHDDHDDGSGENEELNLICQDYFKAFNLFKIGASLNVDSNSLTKLGICFY 355
Y N DG QDY KA+ FK A + + LG+ +
Sbjct: 310 LYSN------------DGE---------LQDYKKAYLWFKKAADQGF-AEAQNNLGLMYM 347
Query: 356 YGRGVTIDYNEAYRLFYQSSICDHHQEHNPEITFYYLGLCLFYGKGVLKNQCKGFEYFMK 415
G G++++Y+EA L+Y+ + E + + L + G G+ K+ +++ K
Sbjct: 348 KGNGLSVNYHEAV-LWYKRAA-----EQGLPLAQHNLAIMYMKGLGIKKDNKLAIKWYQK 401
Query: 416 SA---------------------------SLNHYSPALEA--------VGRCFLNGEGIS 440
+A ++ Y A E +G +L+G G++
Sbjct: 402 AAEKGLDLAQNNLAVMYIRGEGVKRDFKKAMYWYQKAAEQGLDLAQINLGIMYLDGMGVN 461
Query: 441 QNFMQAKLYFTTAKSQGSNQDRNIQDVNKI 470
++F +AK + AK GS I + NK+
Sbjct: 462 KDFAKAKYWIGKAKDSGSQDALTIWNKNKL 491
Score = 38.9 bits (89), Expect = 0.39
Identities = 24/68 (35%), Positives = 34/68 (49%), Gaps = 1/68 (1%)
Query: 390 YYLGLCLFYGKGVLKNQCKGFEYFMKSASLNHYSPALEAVGRCFLNGEGISQNFMQAKLY 449
+ LGL G GV K+ K ++ K+A + A +G +L GEG+ QN QA +
Sbjct: 53 FELGLKYEKGDGVNKDLKKAIYWYQKAADQGQ-AEAQNNLGVLYLKGEGVPQNSQQAMYW 111
Query: 450 FTTAKSQG 457
F A QG
Sbjct: 112 FKKASEQG 119
>gi|29142103|ref|NP_805445.1| put