Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DDB0169210
(659 letters)
Database: /home/dicty1/resource/WorkingDBs//nr-clean
2,329,665 sequences; 788,375,511 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|48095891|ref|XP_394546.1| similar to Cysteine and glycine-ric... 54 1e-05
gi|3080533|emb|CAA18661.1| SPBC13G1.08c [Schizosaccharomyces pom... 41 0.13
gi|20129591|ref|NP_609889.1| CG10414-PA [Drosophila melanogaster... 40 0.22
gi|50756105|ref|XP_415019.1| PREDICTED: similar to CSRP2 binding... 40 0.29
gi|54644914|gb|EAL33654.1| GA10303-PA [Drosophila pseudoobscura] 39 0.49
>gi|48095891|ref|XP_394546.1| similar to Cysteine and glycine-rich
protein 2 binding protein [Apis mellifera]
Length = 478
Score = 54.3 bits (129), Expect = 1e-05
Identities = 32/102 (31%), Positives = 50/102 (48%), Gaps = 16/102 (15%)
Query: 306 WAQILHVALFALTESSKITQNRSPNQLDDNLTHGKRYFHLRDDIYEFINVHWDLICKR-- 363
W ++ + L+ L E S R YFH + DI F++ +WD + K+
Sbjct: 91 WLNVIILTLYNLREKSSGISKRG-------------YFHWKSDISTFVDRNWDFLFKKTV 137
Query: 364 ERIQNWKHTIGMTLSHYQNL-FQNGYPIFQNTGYWCLKDDAP 404
+R +NW TI TLSHY + F++G +G+W L D+ P
Sbjct: 138 KRKKNWIGTISGTLSHYSGIFFKSGTTELGESGWWRLIDNDP 179
>gi|3080533|emb|CAA18661.1| SPBC13G1.08c [Schizosaccharomyces pombe]
pir||T39409 hypothetical protein SPBC13G1.08c - fission yeast
(Schizosaccharomyces pombe)
ref|NP_596557.1| ash2-trithorax family protein [Schizosaccharomyces pombe]
Length = 652
Score = 40.8 bits (94), Expect = 0.13
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 12/100 (12%)
Query: 287 CIVCENGPPPSFEKGQVPIWAQILHVALFALTESSKITQNRSPNQLDDNLTHGKR----- 341
C C FE+G V W I A+ L + N P+ D+ K
Sbjct: 88 CKHCTEDGFERFERG-VSAWKAITATAMANLVVKRYVETN--PDVPVDSFNAEKMRNFQA 144
Query: 342 ---YFHLRDDIYEFINVHWDLIC-KRERIQNWKHTIGMTL 377
+F ++D+ FI HW L+C RE++Q W+ T+G L
Sbjct: 145 NTYFFKKKEDLIPFIEEHWQLLCPDREKVQTWQATLGSCL 184
>gi|20129591|ref|NP_609889.1| CG10414-PA [Drosophila melanogaster]
gb|AAF53681.1| CG10414-PA [Drosophila melanogaster]
gb|AAM49890.1| LD17982p [Drosophila melanogaster]
Length = 774
Score = 40.0 bits (92), Expect = 0.22
Identities = 23/72 (31%), Positives = 34/72 (46%), Gaps = 5/72 (6%)
Query: 338 HGKRYFHLRDDIYEFINVHWDLIC--KRERIQNWKHTIGMTLSHYQ-NLFQNGYPIFQNT 394
HG +FH R I F++ +W+ I R + W ++ LSH FQ+G +FQ
Sbjct: 112 HG--FFHWRTHIISFVDKNWNYIFGPNVRRRKQWTGSVSGALSHNSPEYFQSGLDVFQEN 169
Query: 395 GYWCLKDDAPNP 406
G+W L P
Sbjct: 170 GWWKLAKPFQTP 181
>gi|50756105|ref|XP_415019.1| PREDICTED: similar to CSRP2 binding
protein isoform a; CRP2 binding protein; cysteine rich
protein 2 binding protein; CRP2 binding partner [Gallus
gallus]
Length = 781
Score = 39.7 bits (91), Expect = 0.29
Identities = 31/120 (25%), Positives = 51/120 (41%), Gaps = 18/120 (15%)
Query: 287 CIVCENGPPPSFEKGQVPIWAQILHVALFALTESSKITQNRSPNQLDDNLTHGKRYFHLR 346
C C FE+ ++ W Q++ +A++ L+ T + YF +
Sbjct: 105 CSDCSEDGKEQFERLRLT-WQQVVMLAMYNLSLEG---------------TGRQGYFRWK 148
Query: 347 DDIYEFINVHWD-LICKRERIQNWKHTIGMTLSHYQNL-FQNGYPIFQNTGYWCLKDDAP 404
+DI FI HW L+ R++ W T+ LS L F++G F G+W L + P
Sbjct: 149 EDICAFIEKHWTFLLGNRKKTSTWWSTVAGCLSVGSPLYFRSGAQEFGEPGWWKLVHNKP 208
>gi|54644914|gb|EAL33654.1| GA10303-PA [Drosophila pseudoobscura]
Length = 784
Score = 38.9 bits (89), Expect = 0.49
Identities = 32/125 (25%), Positives = 49/125 (38%), Gaps = 23/125 (18%)
Query: 306 WAQILHVALFALTESSKITQNRSPNQLDDNLTHGKRYFHLRDDIYEFINVHWDLIC--KR 363
W +L + L+ L+ K + HG +FH R I F+ +W+ I
Sbjct: 77 WLMVLTLTLYNLSHKQKGLGH-----------HG--FFHWRTHIISFVERNWNYIFGPNA 123
Query: 364 ERIQNWKHTIGMTLSHYQ-NLFQNGYPIFQNTGYWCLKDDAPNPYTSDFMDNSRKRKYST 422
R + W ++ TLSH F + F TG+W L P S KR+Y
Sbjct: 124 RRRKKWTGSVSGTLSHNSPKYFISAMEQFNETGWWKLAKSNQTP-------RSTKREYEK 176
Query: 423 KLSKK 427
L ++
Sbjct: 177 TLEQR 181
Database: /home/dicty1/resource/WorkingDBs//nr-clean
Posted date: Mar 10, 2005 12:10 PM
Number of letters in database: 788,375,511
Number of sequences in database: 2,329,665
Lambda K H
0.318 0.135 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 437,976,808
Number of Sequences: 2329665
Number of extensions: 13905250
Number of successful extensions: 26799
Number of sequences better than 1.0: 5
Number of HSP's better than 1.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 26796
Number of HSP's gapped (non-prelim): 5
length of query: 659
length of database: 788,375,511
effective HSP length: 134
effective length of query: 525
effective length of database: 476,200,401
effective search space: 250005210525
effective search space used: 250005210525
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 87 (38.1 bits)
BLASTP 2.2.1 [Jul-12-2001]