Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DDB0168966
(239 letters)
Database: /home/dicty1/resource/WorkingDBs//nr-clean
2,329,665 sequences; 788,375,511 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|56708050|ref|YP_169946.1| hypothetical membrane protein [Fran... 71 2e-11
gi|54113669|gb|AAV29468.1| NT02FT0551 [synthetic construct] 71 2e-11
>gi|56708050|ref|YP_169946.1| hypothetical membrane protein
[Francisella tularensis subsp. tularensis Schu 4]
emb|CAG45589.1| hypothetical membrane protein [Francisella tularensis subsp.
tularensis Schu 4]
Length = 239
Score = 71.2 bits (173), Expect = 2e-11
Identities = 64/232 (27%), Positives = 105/232 (44%), Gaps = 36/232 (15%)
Query: 5 LIAFFVICLVAIVSSV-ELDIHINLDPTTNEVAIDYN------NLLHKYAPNDQVFLGSK 57
L AF I L + S + ++++ D T ++ +++ N+L KY + K
Sbjct: 12 LFAFLFITLDSFAESFKQYNVYLIPDTTADKYVKEFDDSLAKTNVLEKYKTTPFI----K 67
Query: 58 SIP-HITLYLTDFVQEQIPLVQNGISQIFPLLNQAGKNCLVQMTTIDISAQ---YGMWLV 113
+ P H+TLYLT F + I + + L N A + T SA + M +
Sbjct: 68 NHPVHLTLYLTSFQSKYIKDINS------QLANLAKNTEPFYIETNGFSAGKSGFVMLDI 121
Query: 114 QNNQCLQYLSDLVVNNTFQYITPNQTIPDWVYSLPEPLRDEKIAMIKKYGSPNVFDQFQP 173
+N+Q LQ LS++V+ + +Y + P W+ P K+ +KYGSPN F +F P
Sbjct: 122 KNSQSLQQLSNVVIKDLAKYRDKDYPAPSWIKFYPS-----KLVSFEKYGSPNAFAEFNP 176
Query: 174 HVTL------AWDEIDNLTIAFNQV----DVQPTSFYSPSIGIGNTGPYGTV 215
H+++ E DN FN++ ++P SF +IG G G V
Sbjct: 177 HISILAANLQTDQERDNFDKDFNEIIKNTKLEPISFKIKAIGFGEVDENGQV 228
>gi|54113669|gb|AAV29468.1| NT02FT0551 [synthetic construct]
Length = 239
Score = 71.2 bits (173), Expect = 2e-11
Identities = 64/232 (27%), Positives = 105/232 (44%), Gaps = 36/232 (15%)
Query: 5 LIAFFVICLVAIVSSV-ELDIHINLDPTTNEVAIDYN------NLLHKYAPNDQVFLGSK 57
L AF I L + S + ++++ D T ++ +++ N+L KY + K
Sbjct: 12 LFAFLFITLDSFAESFKQYNVYLIPDTTADKYVKEFDDSLAKTNVLEKYKTTPFI----K 67
Query: 58 SIP-HITLYLTDFVQEQIPLVQNGISQIFPLLNQAGKNCLVQMTTIDISAQ---YGMWLV 113
+ P H+TLYLT F + I + + L N A + T SA + M +
Sbjct: 68 NHPVHLTLYLTSFQSKYIKDINS------QLANLAKNTEPFYIETNGFSAGKSGFVMLDI 121
Query: 114 QNNQCLQYLSDLVVNNTFQYITPNQTIPDWVYSLPEPLRDEKIAMIKKYGSPNVFDQFQP 173
+N+Q LQ LS++V+ + +Y + P W+ P K+ +KYGSPN F +F P
Sbjct: 122 KNSQSLQQLSNVVIKDLAKYRDKDYPAPSWIKFYPS-----KLVSFEKYGSPNAFAEFNP 176
Query: 174 HVTL------AWDEIDNLTIAFNQV----DVQPTSFYSPSIGIGNTGPYGTV 215
H+++ E DN FN++ ++P SF +IG G G V
Sbjct: 177 HISILAANLQTDQERDNFDKDFNEIIKNTKLEPISFKIKAIGFGEVDENGQV 228
Database: /home/dicty1/resource/WorkingDBs//nr-clean
Posted date: Mar 10, 2005 12:10 PM
Number of letters in database: 788,375,511
Number of sequences in database: 2,329,665
Lambda K H
0.321 0.139 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 386,130,994
Number of Sequences: 2329665
Number of extensions: 16737370
Number of successful extensions: 33549
Number of sequences better than 1.0: 2
Number of HSP's better than 1.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 33545
Number of HSP's gapped (non-prelim): 2
length of query: 239
length of database: 788,375,511
effective HSP length: 124
effective length of query: 115
effective length of database: 499,497,051
effective search space: 57442160865
effective search space used: 57442160865
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 81 (35.8 bits)
Warning: no access to tty (Bad file descriptor).
Thus no job control in this shell.
BLASTP 2.2.1 [Jul-12-2001]