Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DDB0168763
         (540 letters)

Database: /home/dicty1/resource/WorkingDBs//nr-clean
           2,329,665 sequences; 788,375,511 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|23619145|ref|NP_705107.1| hypothetical protein [Plasmodium fa...    46  0.002
gi|21228303|ref|NP_634225.1| hypothetical protein MM2201 [Methan...    40  0.17
gi|3452511|emb|CAA09218.1| Var1u ribosomal protein [Saccharomyce...    39  0.50

>gi|23619145|ref|NP_705107.1| hypothetical protein [Plasmodium
           falciparum 3D7]
 emb|CAD52343.1| hypothetical protein [Plasmodium falciparum 3D7]
          Length = 1486

 Score = 46.2 bits (108), Expect = 0.002
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 3/88 (3%)

Query: 4   NEIQINKNLILLSIKSLEVSFKLNDGEINSNINNIPTSFDVKEKILSILKNNIEDQLPLP 63
           N I++NK  I     ++E + K N+  IN+  NN+  +    E+ ++   NN+ED +   
Sbjct: 676 NNIKLNKENINTKTNNVEENIKTNEENINTKTNNVEENIKTNEENINTKTNNVEDNIKTN 735

Query: 64  PANITLLKPKTNNKQSEDYIYKFKIDIK 91
             NI     KTNN +      K  I+IK
Sbjct: 736 EENI---NTKTNNVEENIKTNKENINIK 760


>gi|21228303|ref|NP_634225.1| hypothetical protein MM2201
          [Methanosarcina mazei Go1]
 gb|AAM31897.1| hypothetical protein [Methanosarcina mazei Goe1]
          Length = 319

 Score = 40.0 bits (92), Expect = 0.17
 Identities = 30/89 (33%), Positives = 50/89 (55%), Gaps = 8/89 (8%)

Query: 2  NYNEIQINKNLILLSIKSLEVSFKLNDGEIN-SNINNIPTSFDVKEKILSILKNNIEDQL 60
          N N +  N N IL    S+ V FKL +GE+  ++INN     +V  +IL++ KN I +++
Sbjct: 9  NMNTLIENLNHILRGTISIVVYFKLKNGEVRLADINN-----NVLPRILTLYKNKISEEI 63

Query: 61 PLPPANITLLKPKTNNKQSEDYIYKFKID 89
           +   N+ LLK  +   + ++ IYK+  D
Sbjct: 64 -INKENLELLK-LSEMDERKNVIYKYDFD 90


>gi|3452511|emb|CAA09218.1| Var1u ribosomal protein [Saccharomyces
           cerevisiae]
 emb|CAA24077.1| var1 reading frame [Saccharomyces cerevisiae]
          Length = 396

 Score = 38.5 bits (88), Expect = 0.50
 Identities = 18/60 (30%), Positives = 35/60 (58%)

Query: 1   MNYNEIQINKNLILLSIKSLEVSFKLNDGEINSNINNIPTSFDVKEKILSILKNNIEDQL 60
           MN N+I ++K +   S+  L + F   + +IN+N NN     ++  K+++I+ NN+ + L
Sbjct: 130 MNINKIIMSKTINQHSLNKLNIKFYYYNNDINNNNNNNNYYMNMMNKLMNIMNNNMNNNL 189


  Database: /home/dicty1/resource/WorkingDBs//nr-clean
    Posted date:  Mar 10, 2005 12:10 PM
  Number of letters in database: 788,375,511
  Number of sequences in database:  2,329,665
  
Lambda     K      H
   0.316    0.137    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,678,466
Number of Sequences: 2329665
Number of extensions: 16574515
Number of successful extensions: 53595
Number of sequences better than  1.0: 3
Number of HSP's better than  1.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 53587
Number of HSP's gapped (non-prelim): 8
length of query: 540
length of database: 788,375,511
effective HSP length: 132
effective length of query: 408
effective length of database: 480,859,731
effective search space: 196190770248
effective search space used: 196190770248
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 86 (37.7 bits)
BLASTP 2.2.1 [Jul-12-2001]