Project Generated Resources

Knockout plasmids - the high-throughput REMI pipeline generates plasmid reagents appropriate for targeted knockouts of loci. These reagents may be ordered through links in the DictyEnsembl tool.

Comparative Genomics - we have performed an extensive comparison of the proteomes of the first two amoebozoa genomes to be sequenced: D. discoideum and Entamoeba histolytica. Results were published recently in PLoS Computational Biology.

Modes of Gene Expression - we have identified 17 major modes of gene expression during wild type multicellular development of Dictyostelium. You can explore the different modes and submodes. The data is also integrated into the DictyEnsembl tool, where you can search for specific genes of interest. (Note: we have encountered minor problems accessing DictyEnsembl with Apple's Safari browser. We recommend using FireFox as an alternative.)

DictyEnsembl is our local genome browser. It is integrated with the Dictyostelium information portal dictyBase. Published gene expression profiles are also interred at dictyBase.

GenePath is an online intelligent assistant for inferring genetic networks.

Download:

GOAT - an R Tool for Analyzing Gene Ontology Term Enrichment.

Orange - an open source framework for datamining

Publications - links to publications by the group, as well as supplementary materials.